hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg15561/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00012  ( 454 res)   mbg15561

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                    99.4    4.1e-25   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/4     272   311 ..     1    46 []    40.7    2e-07
WD40       2/4     316   355 ..     1    46 []    21.5     0.12
WD40       3/4     363   396 ..     1    46 []    12.4      5.3
WD40       4/4     399   437 ..     1    46 []    26.9   0.0028

Alignments of top-scoring domains:
WD40: domain 1 of 4, from 272 to 311: score 40.7, E = 2e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++   +l++H +  +V++v+f p++      +lla+g+ D+ i+lW
   mFLJ00012   272    PsQAQDVLDAHLS--EVNAVCFGPNS------SLLATGGaDRLIHLW 310  

                   d<-*
                   +   
   mFLJ00012   311 N    311  

WD40: domain 2 of 4, from 316 to 355: score 21.5, E = 0.12
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                        +  +tl+g  g  ++tsv+f+p+g      ++++++  +    lW
   mFLJ00012   316    RlEANQTLEGAGG--SITSVDFDPSG------SQVLAATyNQAAQLW 354  

                   d<-*
                   +   
   mFLJ00012   355 K    355  

WD40: domain 3 of 4, from 363 to 396: score 12.4, E = 5.3
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       ++ + +l+      ++++v ++ d       ++++sg +D +ir+W
   mFLJ00012   363    GsRTINVLS------YCNDV-VCGD-------HIIISGHnDQKIRFW 395  

                   d<-*
                   d   
   mFLJ00012   396 D    396  

WD40: domain 4 of 4, from 399 to 437: score 26.9, E = 0.0028
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       + ++++++  +g  +Vts+  s d        +l+s+s+D+t+++ 
   mFLJ00012   399    GpHCIQVIP-VQG--RVTSLHLSYDQ------LHLLSCSrDNTLKVI 436  

                   d<-*
                   d   
   mFLJ00012   437 D    437  

//