hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg15561/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00012  ( 454 res)   mbg15561

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                        89.9    5.1e-23   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/4     274   311 ..     1    38 []    39.4  7.9e-08
WD40       2/4     318   355 ..     1    38 []    15.6      1.2
WD40       3/4     356   396 ..     1    38 []    12.1      6.5
WD40       4/4     401   437 ..     1    38 []    23.7   0.0043

Alignments of top-scoring domains:
WD40: domain 1 of 4, from 274 to 311: score 39.4, E = 7.9e-08
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      + + vl++H s V++v+f p+ ++lla+g++D+ i++W+   
   mFLJ00012   274    QAQDVLdAHLSEVNAVCFGPN-SSLLATGGADRLIHLWN    311  

WD40: domain 2 of 4, from 318 to 355: score 15.6, E = 1.2
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      e  ++l+g  +++t+v+f+p+ g++++ +  +    +W+   
   mFLJ00012   318    EANQTLeGAGGSITSVDFDPS-GSQVLAATYNQAAQLWK    355  

WD40: domain 3 of 4, from 356 to 396: score 12.1, E = 6.5
                   *->eclavl.gHtspVtcvafspd...sgpllasgSrDgtikiWd<-*
                         +  +g   +++ ++++ d   + ++++sg  D +i+ Wd   
   mFLJ00012   356    VGETQSkGS-RTINVLSYCNDvvcGDHIIISGHNDQKIRFWD    396  

WD40: domain 4 of 4, from 401 to 437: score 23.7, E = 0.0043
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       c++v++   + Vt++  s d + +l+s+SrD+t+k+ d   
   mFLJ00012   401    HCIQVIpVQ-GRVTSLHLSYD-QLHLLSCSRDNTLKVID    437  

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