hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj33016/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00007  ( 687 res)   mfj33016

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SH3      Src homology 3 domains                         105.8    4.9e-27   2
FCH      Fes/CIP4 homology domain                        50.8    1.8e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FCH        1/1      15   104 ..     1   103 []    50.8  1.8e-10
SH3        1/2     468   525 ..     1    58 []    43.8  2.3e-08
SH3        2/2     546   605 ..     1    58 []    63.2  3.4e-14

Alignments of top-scoring domains:
FCH: domain 1 of 1, from 15 to 104: score 50.8, E = 1.8e-10
                   *->mgfwselwsddGfeaLlsrlknglrlledlkkflreRakiEeeYAkk
                      + f ++l        L  r++ ++ lled++++ ++Ra+iE+eY++ 
   mFLJ00007    15    LRFLEQL------SILQTRQQREADLLEDIRSYSKQRAAIEREYGQA 55   

                   Lqklskkyfnkkssvgdlravreteselgslkkswevllsetdalakshl
                   Lqkl+  +++++     ++++ e +s  ++   +w+ ll+ t a ++++l
   mFLJ00007    56 LQKLAGPFLKRE-----GQRSGEADSRTVF--GAWRCLLDATVAGGQTRL 98   

                   qlsedL<-*
                   q s+ +   
   mFLJ00007    99 QASDRY    104  

SH3: domain 1 of 2, from 468 to 525: score 43.8, E = 2.3e-08
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleks.ddgWweGelnrtGke
                      + + +++ y+a  edEL++++G+ ++v+e+ + d+W +++++  G+ 
   mFLJ00007   468    CPAHVVFGYQAGREDELTITEGEWLEVIEEGdADEWVKARNQ-HGEA 513  

                   GlfPsnYVeeie<-*
                   G++P  Y+   +   
   mFLJ00007   514 GFVPERYLNFPD    525  

SH3: domain 2 of 2, from 546 to 605: score 63.2, E = 3.4e-14
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleks....ddgWweGelnrt
                      + ++AlY+y++q+e+ELsF +G  i++l + +++ ddg w+Ge +  
   mFLJ00007   546    FLARALYSYTGQSEEELSFPEGALIRLLPRAqdgvDDGFWRGEFG-- 590  

                   GkeGlfPsnYVeeie<-*
                   G +G fPs  Vee+    
   mFLJ00007   591 GHVGVFPSLLVEELL    605  

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