hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj33016/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00007 ( 687 res) mfj33016 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SH3_1 SH3 domain 67.7 2.4e-16 2 SH3_2 Variant SH3 domain 65.9 8.8e-16 2 FCH Fes/CIP4 homology domain 42.4 1e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- FCH 1/1 15 104 .. 1 107 [] 42.4 1e-08 SH3_2 1/2 469 523 .. 1 69 [] 24.7 0.0021 SH3_1 1/2 468 524 .. 1 58 [] 29.4 8.6e-05 SH3_1 2/2 546 604 .. 1 58 [] 38.4 1.6e-07 SH3_2 2/2 547 604 .. 1 69 [] 41.2 2.3e-08 Alignments of top-scoring domains: FCH: domain 1 of 1, from 15 to 104: score 42.4, E = 1e-08 *->dgFwselnsddgykaLlkrlddglrlledlkkFlreRakiEeeYAkk F+++l +L+ r++ + +lled++++ ++Ra+iE+eY++ mFLJ00007 15 LRFLEQL------SILQTRQQREADLLEDIRSYSKQRAAIEREYGQA 55 LqklskkyfnkkRkSdgsvskdsltekgpdslsslkkawnvllsetdqls Lqkl+ +++++ +++ + + +++ aw+ ll+ t + + mFLJ00007 56 LQKLAGPFLKRE---------GQRSGEADSRTVF--GAWRCLLDATVAGG 94 klHsqlseqL<-* ++++q s+ + mFLJ00007 95 QTRLQASDRY 104 SH3_2: domain 1 of 2, from 469 to 523: score 24.7, E = 0.0021 *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggskdddgwwl ++ +++ y a +++e L++++G+ ++vi + d d+w mFLJ00007 469 PAHVVFGYQA-GREDE------LTITEGEWLEVI---EEGDADEWVK 505 geslggGrrrRGlvPssaveel<-* +++ +G++ G+vP ++ + mFLJ00007 506 ARN-QHGEA--GFVPERYL-NF 523 SH3_1: domain 1 of 2, from 468 to 524: score 29.4, E = 8.6e-05 *->kkvvALYDYearesdELsFkkGDvitvleksdd.gWWkgrlkgtgGk + + + Y+a +dEL++++G+ ++v+e+ d+++W k+r++ G+ mFLJ00007 468 CPAHVVFGYQAGREDELTITEGEWLEVIEEGDAdEWVKARNQH--GE 512 eGliPsNYVepv<-* G++P Y+ mFLJ00007 513 AGFVPERYLNFP 524 SH3_1: domain 2 of 2, from 546 to 604: score 38.4, E = 1.6e-07 *->kkvvALYDYearesdELsFkkGDvitvleksdd....gWWkgrlkgt ++ALY Y++++++ELsF +G i +l + d+ ++g W+g+ mFLJ00007 546 FLARALYSYTGQSEEELSFPEGALIRLLPRAQDgvddGFWRGEFG-- 590 gGkeGliPsNYVepv<-* G++G +Ps Ve+ mFLJ00007 591 -GHVGVFPSLLVEEL 604 SH3_2: domain 2 of 2, from 547 to 604: score 41.2, E = 2.3e-08 *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggskddd.... ++ra+ +y++ ++++e Ls+ +G +++++ + +d+ ++ mFLJ00007 547 LARALYSYTG-QSEEE------LSFPEGALIRLL----PRAQDgvdd 582 gwwlgeslggGrrrRGlvPssaveel<-* g+w+ge gG++ G++Ps +veel mFLJ00007 583 GFWRGEF--GGHV--GVFPSLLVEEL 604 //