hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbj/mbj00080/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00006  ( 766 res)   mbj00080

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TBC      Domain in Tre-2, BUB2p, and Cdc16p. Probable   221.4    7.7e-62   1
SH3      Src homology 3 domains                          78.1    1.1e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TBC        1/1     127   344 ..     1   310 []   221.4  7.7e-62
SH3        1/1     499   554 ..     1    58 []    78.1  1.1e-18

Alignments of top-scoring domains:
TBC: domain 1 of 1, from 127 to 344: score 221.4, E = 7.7e-62
                   *->vrkGvppslRgeVWklLlnaqpmntsnweraqkakdaesqflvvndd
                      v  G+p+ +R+ +W  L++a++++                      +
   mFLJ00006   127    VLAGIPHGMRPQLWMRLSGALQKK----------------------K 151  

                   rlkdeYsrllnqtapkdkstdleqavssnnkdfeeqPLsiwnffqdndsl
                    ++  Y+++++  ++++  +                              
   mFLJ00006   152 NSELSYREIIKNSSNDETIAA----------------------------- 172  

                   dqIekDlkRTfpelsfFqfrsrdnqkevllddengpgqesLrrvLkaYsl
                   +qIekDl RT+p + +F +              n+ g+ +LrrvL+a ++
   mFLJ00006   173 KQIEKDLLRTMPSNACFAN-------------VNSIGVPRLRRVLRALAW 209  

                   ynpehivgYcQGmnflaapLLlvmpiydEedAFwcfvkLmerylpnflfk
                   + pe  +gYcQG + +aa+LLl++   +EedAFw++++++e+ lp  +f 
   mFLJ00006   210 LYPE--IGYCQGTGMVAACLLLFL---EEEDAFWMMCAIIEDLLPASYF- 253  

                   dtnnfytpdlsglqadqlvldslleeylPeLykHLqeqdkqskkkhvdkl
                         + +l g+q dq+vl++l+ +ylP L k Lqe+            
   mFLJ00006   254 ------STTLLGVQTDQRVLRHLIVQYLPRLDKLLQEH------------ 285  

                   eidpslyalrWfLtlFarelPledvlRiwDvlfaellrlgseflfkiala
                   +i+ sl +l+WfLt Fa+ ++  ++lRiwD++f+e    gs +lf++ l 
   mFLJ00006   286 DIELSLITLHWFLTAFASVVHIRLLLRIWDLFFYE----GSLVLFQTTLG 331  

                   iLklnedkllkld<-*
                   +L+l+e++l++     
   mFLJ00006   332 MLRLKEEELIQSE    344  

SH3: domain 1 of 1, from 499 to 554: score 78.1, E = 1.1e-18
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG
                      ++++Al D+e  ++dEL F+k+Diit++++ d++ w Geln  G +G
   mFLJ00006   499    RRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELN--GLRG 543  

                   lfPsnYVeeie<-*
                   +fP+ +Ve+++   
   mFLJ00006   544 WFPAKFVEVLD    554  

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