hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbj/mbj00080/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00006  ( 766 res)   mbj00080

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RUN      RUN domain                                     208.7      9e-59   1
TBC      TBC domain                                     203.4    3.6e-57   1
SH3_1    SH3 domain                                      63.1    6.1e-15   1
SH3_2    Variant SH3 domain                              49.2    8.8e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TBC        1/1     127   343 ..     1   219 []   203.4  3.6e-57
SH3_1      1/1     499   553 ..     1    58 []    63.1  6.1e-15
SH3_2      1/1     500   553 ..     1    69 []    49.2  8.8e-11
RUN        1/1     579   734 ..     1   174 []   208.7    9e-59

Alignments of top-scoring domains:
TBC: domain 1 of 1, from 127 to 343: score 203.4, E = 3.6e-57
                   *->vkeGvpsstrakVWavcsgAyqlrYAsageYerll..rrgdekesqa
                      v  G p  +r++ W  +sgA q +  s   Y ++++++ +de  ++ 
   mFLJ00006   127    VLAGIPHGMRPQLWMRLSGALQKKKNSELSYREIIknSSNDETIAA- 172  

                   vdkIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvgYcQGM
                     +IekD+ Rt++ +  F       g ++LrrvL A  w  P++gYcQG 
   mFLJ00006   173 -KQIEKDLLRTMPSNACFANV-NSIGVPRLRRVLRALAWLYPEIGYCQGT 220  

                   NVvaApfLllykSEeqAFyfLdrLlenvvPlKYylpdldGvrlDqkvLds
                     vaA +Ll+   Ee+AF++++ ++e  +P  Y++ +l Gv  Dq+vL  
   mFLJ00006   221 GMVAACLLLFL-EEEDAFWMMCAIIEDLLPASYFSTTLLGVQTDQRVLRH 269  

                   fveellprLYeYLlskgvdlkvvsLpwfLsLyattlPleeAlrIfDiLFa
                    +   lprL   L  ++++l+ + L+wfL+ +a        lrI+D++F 
   mFLJ00006   270 LIVQYLPRLDKLLQEHDIELSLITLHWFLTAFASVVHIRLLLRIWDLFFY 319  

                   dGivllfrvaLAvLkilkeqiLda<-*
                   +G+ +lf+  L  L    e++++    
   mFLJ00006   320 EGSLVLFQTTLGMLRLKEEELIQS    343  

SH3_1: domain 1 of 1, from 499 to 553: score 63.1, E = 6.1e-15
                   *->kkvvALYDYearesdELsFkkGDvitvleksddgWWkgrlkgtgGke
                      ++++AL D+e +++dEL F+k+D+it+++++d++ W g+l+   G +
   mFLJ00006   499    RRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELN---GLR 542  

                   GliPsNYVepv<-*
                   G++P+ +Ve     
   mFLJ00006   543 GWFPAKFVEVL    553  

SH3_2: domain 1 of 1, from 500 to 553: score 49.2, E = 8.8e-11
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggskdddgwwl
                      +++a+ d++   d +e      L ++k+d++ +i    s++d++ w 
   mFLJ00006   500    RAKALLDFER-HDDDE------LGFRKNDIITII----SQKDEHCWV 535  

                   geslggGrrrRGlvPssaveel<-*
                   ge+  +G r  G++P+++ve+l   
   mFLJ00006   536 GEL--NGLR--GWFPAKFVEVL    553  

RUN: domain 1 of 1, from 579 to 734: score 208.7, E = 9e-59
                   *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls
                      tLCpal+Al++HGLk p ll+ga hpw+fie+aa +e+e+++ sv+s
   mFLJ00006   579    TLCPALKALFEHGLKKPSLLGGACHPWLFIEEAAGREVERDFDSVYS 625  

                   sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLaeKrSsvi
                   +++l         c+t++ld+++kvl+++e+l++ v++++ +++   +++
   mFLJ00006   626 RLVL---------CKTYRLDEDGKVLTPEELLYRAVQSVNVTHD---AAH 663  

                   ktavgrgRKyAWiRlaLneksLssylklLlsdeellrkyYkpnAlLrdpS
                   +++++++R  ++i+++Lne++L+++l+ L+s   ++ k+Y+p+++Lr+p 
   mFLJ00006   664 AQMDVKLR--SLICVGLNEQVLHLWLEVLCSSLPTVEKWYQPWSFLRSP- 710  

                   deegCeillslLqgLsaldFsLdlkfe<-*
                     ++  ++++ L+ L+ + FsL+ ++e   
   mFLJ00006   711 --GW-VQIKCELRVLCCFAFSLSQDWE    734  

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