hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg13511/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00002 ( 1486 res) mbg13511 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ABC_tran ABC transporter 296.9 2.4e-85 2 ABC_membrane ABC transporter transmembrane region 163.0 5e-45 2 SMC_N RecF/RecN/SMC N terminal domain -124.7 0.11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ABC_membrane 1/2 285 551 .. 1 286 [] 104.3 2.4e-27 ABC_tran 1/2 626 800 .. 1 206 [] 117.7 2.1e-31 SMC_N 1/1 617 805 .. 1 243 [] -124.7 0.11 ABC_membrane 2/2 934 1202 .. 1 286 [] 65.2 1.4e-15 ABC_tran 2/2 1267 1449 .. 1 206 [] 186.2 5.1e-52 Alignments of top-scoring domains: ABC_membrane: domain 1 of 2, from 285 to 551: score 104.3, E = 2.4e-27 *->lligilllilagatalvtfplllgrfldsgfplsdgnddhearssli +l+++ll+++++ +++ plll++++ + l g + s++ mFLJ00002 285 YLALGLLKMVGTMLGFS-GPLLLSLLVGF---LEEGQEP---LSHGL 324 slailsllavfvlqglllqgsfyllagerlgqrlrkrlfrallrqilglf + ++ l + +v+ + l +++ y +++ ++r+++ + l+r+ l+l mFLJ00002 325 LYVLG-LAGGTVISAVLQNQYGYE--VRKVTLQARVAVLSTLYRKALKLG 371 dsffdtnsvGeltsRltnDvskirdglgdklgllfqslatvvgglivmfy s + ++Ge +++l +D +++ ++ g++ + ++l++ +++++++ + mFLJ00002 372 PS---RPPTGEVLNLLGTDSERLLNFAGSFHEAWGLPLQLAITLYLLYQQ 418 yswkLtLvllailpllillsavlakklrklnrkeqkayakagsvaeEsls ++ ++ +l+ + +ll+++++v+a +++ n+++ + + + +v++E ls mFLJ00002 419 VGMAFLAGLV-LALLLVPVNKVIATRIMASNQEMLRHKDARVKVMTELLS 467 girTVkafgrEeyelerydkaledaekagikkaiiagllfgitqlisyls gir++k f++E++ +r + + +e+ +++++++ + ++++ ++ mFLJ00002 468 GIRVIKFFRWEQALGDRVKACRT-KELGRLRVIKYLDAACVYLWAALPV- 515 yalalwfGgylvasvisgglsvgtlfaflslgnqltgpl<-* ++ + f++y ++++l+ ++f++l l+ +l+ pl mFLJ00002 516 VICITIFITYV---LMGHQLTATKVFTALALVRMLILPL 551 ABC_tran: domain 1 of 2, from 626 to 800: score 117.7, E = 2.1e-31 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevvalvGpNGaGKSTLLklisGllqiPdrteGeilidpGedltdls G +v++vG G+GKS+LL +i+G+l+ G + ++ +l+ + mFLJ00002 626 GMLVGIVGKVGCGKSSLLAAITGELH-R--LCGWVAVS---ELSKG- 665 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx lealrklgrigvvpQdpqlflnptlTvrenlafglrlkgplekeerdefa g Q+p++ T+r+n+ fg + + mFLJ00002 666 ---------FGLATQEPWIQ---CATIRDNILFGKTF------------D 691 RF xxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxx darveeaLervGladlldrlpqglDt.lgdgggtLSGGqkQRvalARaLl + +e+Le l+d l+ lp g+ t++g+ g tLSGGq+ R+alARa++ mFLJ00002 692 AQLYREVLEACALNDDLSILPAGDQTeVGEKGVTLSGGQRARIALARAVY 741 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx tkpklLlLDEPTagLDpasraqllellrelrqrggtvllitHdlefvdrl ++ l+lLD P a+ D++ +ll +t ll tH+ e ++r mFLJ00002 742 QEKALYLLDDPLAAVDADVANHLLHRCILGVLSHTTRLLCTHRTEYLER- 790 RF xxxxxxxxxx adrilvlenG<-* ad +l +e+G mFLJ00002 791 ADVVLLMEAG 800 SMC_N: domain 1 of 1, from 617 to 805: score -124.7, E = 0.11 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->ylkrielegFKSYagktiigpFspgFtaIvGPNGSGKSNiiDAIlFV ++ ++ ++ + + IvG G+GKS+++ AI mFLJ00002 617 FISHLQVK-----K---------GMLVGIVGKVGCGKSSLLAAI--- 646 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx LGersakkLRaeklsdLIhaGsksgasvnsAeVtitFlvqkivdnedkkh ++ +l +L + V + ++ k mFLJ00002 647 ----TG------ELHRLC------------GWVAV--------SELSKG- 665 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx iNSpflpideeeevsItRrvyrdGdqYSeYyINGknvtkIkdvseLLesa + + e I +rd+ + Gk+ + + e Le mFLJ00002 666 -----FGLATQE-PWIQCATIRDNI------LFGKTFDA-QLYREVLEAC 702 RF xxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxx GIske.................nLSGGEKtLaALALlFAQGEyliqkykP ++ ++ + ++ + ++ LSGG+++ +ALA + A +++ k mFLJ00002 703 ALNDDlsilpagdqtevgekgvTLSGGQRARIALA-R-A-----VYQEKA 745 RF xxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxx aPFYvlDEiDAALDea......NvsrvAnyiktelsknaQFIVIslReem +Y+lD+ AA D+ ++ ++ +++ + + + + ++R e mFLJ00002 746 --LYLLDDPLAAVDADvanhllHRCILGVLSH-TTR-----LLCTHRTEY 787 RF xxxxxxxxxxxxxxxxxxx fekAdrlvGvymvengvst<-* +e Ad+++ + + v t mFLJ00002 788 LERADVVLLMEA-GQLVRT 805 ABC_membrane: domain 2 of 2, from 934 to 1202: score 65.2, E = 1.4e-15 *->lligilllilagatalvtfplllgrfldsgfplsdgnddhearssli l ++ ll++++ + pll+ + + s+g + a+ +++ mFLJ00002 934 ALFSPRLLLFSPGNLYT--PLLSTPLHKA---ASNG--T--ADVHFY 971 slailsllavfvlqglllqgsfyllagerlgqrlrkrlfrallrqilglf + + ++a + + ll+++++ + ++ l+++ll+ +l ++ mFLJ00002 972 LIVYA-TIAGVNSLCTLLRAVLFA----AGALQAAASLHHRLLHRLLMAP 1016 dsffdtnsvGeltsRltnDvskirdglgdklgllfqslatvvgglivmfy f d +++G+ ++R+++Dv+ ++d+l++ l +l+ + + ++g+l+v mFLJ00002 1017 VTFYDSTPSGRVLNRFSSDVACVDDSLPFLLNILLANSVGLLGLLAVLGS 1066 yswkLtLvllailpllillsavlakklrklnrkeqkayakagsvaeEsls ++L+L+l +++++++ ++ ++ +r+l+r+ + +++++s++ ++l mFLJ00002 1067 GLPWLLLLLPPLSFVYYSVQGYYRASFRELRRLGSLTWSPLYSHLADTLA 1116 girTVkafgrEeyelerydkaledaekagikkaiiagllfgitqlisyls g+ +++a g+ ++e+ + le +++ ++ +++ +l +++ql++ + mFLJ00002 1117 GLPVLRAAGATYRFEEENQRLLELNQRCQFASYATMQWLDIRLQLMGAA- 1165 yalalwfGgylvasvisgglsvgtlfaflslgnqltgpl<-* ++ + G lv++ + g ++g + + s + lt + mFLJ00002 1166 -VVSAIAGIALVQH-QQGLANPGAIGSPTSSAVALTLAT 1202 ABC_tran: domain 2 of 2, from 1267 to 1449: score 186.2, E = 5.1e-52 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevvalvGpNGaGKSTLLklisGllqiPdrteGeilidpGedltdls Ge++++vG+ G+GKS+L+ ++ +ll+ P +G++l+d + d ++l+ mFLJ00002 1267 GEKLGIVGRTGSGKSSLFLVLFRLLE-P--NAGRVLLD-NVDTSQLE 1309 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx lealrklgrigvvpQdpqlflnptlTvrenlafglrlkgplekeerdefa l++lr + ++v+pQ+p+lf ++T+renl+ ++ mFLJ00002 1310 LAELRSQ--LAVIPQEPFLF---SGTIRENLDPQGLH------------E 1342 RF xxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxx darveeaLervGladlldrlpqglDt.lgdgggtLSGGqkQRvalARaLl d+ +++aLe+ +l +++ glD +lg++g +LS Gq+Q ++lARaLl mFLJ00002 1343 DRALWQALEQCHLSEVAVAMG-GLDGeLGERGQNLSLGQRQLLCLARALL 1391 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx tkpklLlLDEPTagLDpasraqllellrelrqrggtvllitHdlefvdrl t++k+L DE+Ta+ D ++ + l++++ + + ++tvl i H+l+ +++ mFLJ00002 1392 TDAKILCIDEATASVDQKTDQLLQQTICKRFA-NKTVLTIAHRLNTILN- 1439 RF xxxxxxxxxx adrilvlenG<-* +dr+lvl++G mFLJ00002 1440 SDRVLVLQAG 1449 //