hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file: /cdna4/rodent/full/goal/mbg/mbg13511/w3open/interpro/cnk_1/seq.in
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Query: mFLJ00002 ( 1486 res) mbg13511
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ABC_tran ABC transporter 296.9 2.4e-85 2
ABC_membrane ABC transporter transmembrane region 163.0 5e-45 2
SMC_N RecF/RecN/SMC N terminal domain -124.7 0.11 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ABC_membrane 1/2 285 551 .. 1 286 [] 104.3 2.4e-27
ABC_tran 1/2 626 800 .. 1 206 [] 117.7 2.1e-31
SMC_N 1/1 617 805 .. 1 243 [] -124.7 0.11
ABC_membrane 2/2 934 1202 .. 1 286 [] 65.2 1.4e-15
ABC_tran 2/2 1267 1449 .. 1 206 [] 186.2 5.1e-52
Alignments of top-scoring domains:
ABC_membrane: domain 1 of 2, from 285 to 551: score 104.3, E = 2.4e-27
*->lligilllilagatalvtfplllgrfldsgfplsdgnddhearssli
+l+++ll+++++ +++ plll++++ + l g + s++
mFLJ00002 285 YLALGLLKMVGTMLGFS-GPLLLSLLVGF---LEEGQEP---LSHGL 324
slailsllavfvlqglllqgsfyllagerlgqrlrkrlfrallrqilglf
+ ++ l + +v+ + l +++ y +++ ++r+++ + l+r+ l+l
mFLJ00002 325 LYVLG-LAGGTVISAVLQNQYGYE--VRKVTLQARVAVLSTLYRKALKLG 371
dsffdtnsvGeltsRltnDvskirdglgdklgllfqslatvvgglivmfy
s + ++Ge +++l +D +++ ++ g++ + ++l++ +++++++ +
mFLJ00002 372 PS---RPPTGEVLNLLGTDSERLLNFAGSFHEAWGLPLQLAITLYLLYQQ 418
yswkLtLvllailpllillsavlakklrklnrkeqkayakagsvaeEsls
++ ++ +l+ + +ll+++++v+a +++ n+++ + + + +v++E ls
mFLJ00002 419 VGMAFLAGLV-LALLLVPVNKVIATRIMASNQEMLRHKDARVKVMTELLS 467
girTVkafgrEeyelerydkaledaekagikkaiiagllfgitqlisyls
gir++k f++E++ +r + + +e+ +++++++ + ++++ ++
mFLJ00002 468 GIRVIKFFRWEQALGDRVKACRT-KELGRLRVIKYLDAACVYLWAALPV- 515
yalalwfGgylvasvisgglsvgtlfaflslgnqltgpl<-*
++ + f++y ++++l+ ++f++l l+ +l+ pl
mFLJ00002 516 VICITIFITYV---LMGHQLTATKVFTALALVRMLILPL 551
ABC_tran: domain 1 of 2, from 626 to 800: score 117.7, E = 2.1e-31
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
*->GevvalvGpNGaGKSTLLklisGllqiPdrteGeilidpGedltdls
G +v++vG G+GKS+LL +i+G+l+ G + ++ +l+ +
mFLJ00002 626 GMLVGIVGKVGCGKSSLLAAITGELH-R--LCGWVAVS---ELSKG- 665
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
lealrklgrigvvpQdpqlflnptlTvrenlafglrlkgplekeerdefa
g Q+p++ T+r+n+ fg + +
mFLJ00002 666 ---------FGLATQEPWIQ---CATIRDNILFGKTF------------D 691
RF xxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxx
darveeaLervGladlldrlpqglDt.lgdgggtLSGGqkQRvalARaLl
+ +e+Le l+d l+ lp g+ t++g+ g tLSGGq+ R+alARa++
mFLJ00002 692 AQLYREVLEACALNDDLSILPAGDQTeVGEKGVTLSGGQRARIALARAVY 741
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
tkpklLlLDEPTagLDpasraqllellrelrqrggtvllitHdlefvdrl
++ l+lLD P a+ D++ +ll +t ll tH+ e ++r
mFLJ00002 742 QEKALYLLDDPLAAVDADVANHLLHRCILGVLSHTTRLLCTHRTEYLER- 790
RF xxxxxxxxxx
adrilvlenG<-*
ad +l +e+G
mFLJ00002 791 ADVVLLMEAG 800
SMC_N: domain 1 of 1, from 617 to 805: score -124.7, E = 0.11
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
*->ylkrielegFKSYagktiigpFspgFtaIvGPNGSGKSNiiDAIlFV
++ ++ ++ + + IvG G+GKS+++ AI
mFLJ00002 617 FISHLQVK-----K---------GMLVGIVGKVGCGKSSLLAAI--- 646
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LGersakkLRaeklsdLIhaGsksgasvnsAeVtitFlvqkivdnedkkh
++ +l +L + V + ++ k
mFLJ00002 647 ----TG------ELHRLC------------GWVAV--------SELSKG- 665
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
iNSpflpideeeevsItRrvyrdGdqYSeYyINGknvtkIkdvseLLesa
+ + e I +rd+ + Gk+ + + e Le
mFLJ00002 666 -----FGLATQE-PWIQCATIRDNI------LFGKTFDA-QLYREVLEAC 702
RF xxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxx
GIske.................nLSGGEKtLaALALlFAQGEyliqkykP
++ ++ + ++ + ++ LSGG+++ +ALA + A +++ k
mFLJ00002 703 ALNDDlsilpagdqtevgekgvTLSGGQRARIALA-R-A-----VYQEKA 745
RF xxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxx
aPFYvlDEiDAALDea......NvsrvAnyiktelsknaQFIVIslReem
+Y+lD+ AA D+ ++ ++ +++ + + + + ++R e
mFLJ00002 746 --LYLLDDPLAAVDADvanhllHRCILGVLSH-TTR-----LLCTHRTEY 787
RF xxxxxxxxxxxxxxxxxxx
fekAdrlvGvymvengvst<-*
+e Ad+++ + + v t
mFLJ00002 788 LERADVVLLMEA-GQLVRT 805
ABC_membrane: domain 2 of 2, from 934 to 1202: score 65.2, E = 1.4e-15
*->lligilllilagatalvtfplllgrfldsgfplsdgnddhearssli
l ++ ll++++ + pll+ + + s+g + a+ +++
mFLJ00002 934 ALFSPRLLLFSPGNLYT--PLLSTPLHKA---ASNG--T--ADVHFY 971
slailsllavfvlqglllqgsfyllagerlgqrlrkrlfrallrqilglf
+ + ++a + + ll+++++ + ++ l+++ll+ +l ++
mFLJ00002 972 LIVYA-TIAGVNSLCTLLRAVLFA----AGALQAAASLHHRLLHRLLMAP 1016
dsffdtnsvGeltsRltnDvskirdglgdklgllfqslatvvgglivmfy
f d +++G+ ++R+++Dv+ ++d+l++ l +l+ + + ++g+l+v
mFLJ00002 1017 VTFYDSTPSGRVLNRFSSDVACVDDSLPFLLNILLANSVGLLGLLAVLGS 1066
yswkLtLvllailpllillsavlakklrklnrkeqkayakagsvaeEsls
++L+L+l +++++++ ++ ++ +r+l+r+ + +++++s++ ++l
mFLJ00002 1067 GLPWLLLLLPPLSFVYYSVQGYYRASFRELRRLGSLTWSPLYSHLADTLA 1116
girTVkafgrEeyelerydkaledaekagikkaiiagllfgitqlisyls
g+ +++a g+ ++e+ + le +++ ++ +++ +l +++ql++ +
mFLJ00002 1117 GLPVLRAAGATYRFEEENQRLLELNQRCQFASYATMQWLDIRLQLMGAA- 1165
yalalwfGgylvasvisgglsvgtlfaflslgnqltgpl<-*
++ + G lv++ + g ++g + + s + lt +
mFLJ00002 1166 -VVSAIAGIALVQH-QQGLANPGAIGSPTSSAVALTLAT 1202
ABC_tran: domain 2 of 2, from 1267 to 1449: score 186.2, E = 5.1e-52
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
*->GevvalvGpNGaGKSTLLklisGllqiPdrteGeilidpGedltdls
Ge++++vG+ G+GKS+L+ ++ +ll+ P +G++l+d + d ++l+
mFLJ00002 1267 GEKLGIVGRTGSGKSSLFLVLFRLLE-P--NAGRVLLD-NVDTSQLE 1309
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
lealrklgrigvvpQdpqlflnptlTvrenlafglrlkgplekeerdefa
l++lr + ++v+pQ+p+lf ++T+renl+ ++
mFLJ00002 1310 LAELRSQ--LAVIPQEPFLF---SGTIRENLDPQGLH------------E 1342
RF xxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxx
darveeaLervGladlldrlpqglDt.lgdgggtLSGGqkQRvalARaLl
d+ +++aLe+ +l +++ glD +lg++g +LS Gq+Q ++lARaLl
mFLJ00002 1343 DRALWQALEQCHLSEVAVAMG-GLDGeLGERGQNLSLGQRQLLCLARALL 1391
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
tkpklLlLDEPTagLDpasraqllellrelrqrggtvllitHdlefvdrl
t++k+L DE+Ta+ D ++ + l++++ + + ++tvl i H+l+ +++
mFLJ00002 1392 TDAKILCIDEATASVDQKTDQLLQQTICKRFA-NKTVLTIAHRLNTILN- 1439
RF xxxxxxxxxx
adrilvlenG<-*
+dr+lvl++G
mFLJ00002 1440 SDRVLVLQAG 1449
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