FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1248.ptfa, 308 aa
 vs ./tmplib.26680 library

1768709 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.0766+/-0.00428; mu= 11.1690+/- 0.287
 mean_var=85.9089+/-20.037, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1384

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1180  ( 490 res)   mbg13054                   ( 490) 1239  257 1.5e-69


>>mKIAA1180  ( 490 res)   mbg13054                        (490 aa)
 initn: 1251 init1: 825 opt: 1239  Z-score: 1340.8  bits: 256.9 E(): 1.5e-69
Smith-Waterman score: 1334;  62.154% identity (66.447% ungapped) in 325 aa overlap (1-308:170-490)

                                             10        20        30
mKIAA1                               AIFTYHDVGLNYKSCFQPLFRFGDMQEIIQ
                                     ::.::::::::.: ::. .: : ::::: .
mKIAA1 VDTDWKEHDIETPYGLLHVVIRGSPKGNRPAILTYHDVGLNHKLCFNTFFNFEDMQEITK
     140       150       160       170       180       190         

               40        50        60        70        80        90
mKIAA1 NFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFSTIIGVGVGAGAYILS
       .::  ::::::.. ::  :: :::.::..::: :.: ..:...:. .::.:::::::.:.
mKIAA1 HFVVCHVDAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQHFGFKYVIGIGVGAGAYVLA
     200       210       220       230       240       250         

              100       110       120       130       140       150
mKIAA1 RYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIPDMILGHLFSQEELSGNSEL
       ..::  :: ::::::.:::::.:::.:::: ::.::::..:: .:.:::::::: .:.::
mKIAA1 KFALIFPDLVEGLVLMNIDPNGKGWIDWAATKLSGLTSTLPDTVLSHLFSQEELVNNTEL
     260       270       280       290       300       310         

              160       170       180           190       200      
mKIAA1 IQKYRGIIQHAPNLENIELYWNSYNNRRDLNFERGGET----TLKCPVMLVVGDQAPHED
       .:.::  :... :  :..:.:: ::.::::...: : .    ::.:::::::::.:: :.
mKIAA1 VQSYRQQISNVVNQANLQLFWNMYNSRRDLDINRPGTVPNAKTLRCPVMLVVGDNAPAEE
     320       330       340       350       360       370         

        210       220       230       240       250                
mKIAA1 AVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMGYMA-----------
       .::::::::::: :.::::::::: ::.:::::::::::::::::::.:           
mKIAA1 GVVECNSKLDPTTTTFLKMADSGGLPQVTQPGKLTEAFKYFLQGMGYIAHLKDRRLSGGA
     380       390       400       410       420       430         

           260       270       280       290       300        
mKIAA1 --SSCMTRLSRSRTASLTSAASIDGSRSRSRTLSQSSESGTLPSGPPGHTMEVSC
         :. ::::.::::::::::.:.:::: .  . :.:::.     :  .:::::::
mKIAA1 VPSASMTRLARSRTASLTSASSVDGSRPQPCAHSDSSEG----MGQVNHTMEVSC
     440       450       460       470           480       490




308 residues in 1 query   sequences
1768709 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:39:15 2006 done: Mon Mar 27 10:39:16 2006
 Scan time:  0.510 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]