FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1248.ptfa, 308 aa vs ./tmplib.26680 library 1768709 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.0766+/-0.00428; mu= 11.1690+/- 0.287 mean_var=85.9089+/-20.037, 0's: 0 Z-trim: 1 B-trim: 0 in 0/36 Lambda= 0.1384 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1180 ( 490 res) mbg13054 ( 490) 1239 257 1.5e-69 >>mKIAA1180 ( 490 res) mbg13054 (490 aa) initn: 1251 init1: 825 opt: 1239 Z-score: 1340.8 bits: 256.9 E(): 1.5e-69 Smith-Waterman score: 1334; 62.154% identity (66.447% ungapped) in 325 aa overlap (1-308:170-490) 10 20 30 mKIAA1 AIFTYHDVGLNYKSCFQPLFRFGDMQEIIQ ::.::::::::.: ::. .: : ::::: . mKIAA1 VDTDWKEHDIETPYGLLHVVIRGSPKGNRPAILTYHDVGLNHKLCFNTFFNFEDMQEITK 140 150 160 170 180 190 40 50 60 70 80 90 mKIAA1 NFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFSTIIGVGVGAGAYILS .:: ::::::.. :: :: :::.::..::: :.: ..:...:. .::.:::::::.:. mKIAA1 HFVVCHVDAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQHFGFKYVIGIGVGAGAYVLA 200 210 220 230 240 250 100 110 120 130 140 150 mKIAA1 RYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIPDMILGHLFSQEELSGNSEL ..:: :: ::::::.:::::.:::.:::: ::.::::..:: .:.:::::::: .:.:: mKIAA1 KFALIFPDLVEGLVLMNIDPNGKGWIDWAATKLSGLTSTLPDTVLSHLFSQEELVNNTEL 260 270 280 290 300 310 160 170 180 190 200 mKIAA1 IQKYRGIIQHAPNLENIELYWNSYNNRRDLNFERGGET----TLKCPVMLVVGDQAPHED .:.:: :... : :..:.:: ::.::::...: : . ::.:::::::::.:: :. mKIAA1 VQSYRQQISNVVNQANLQLFWNMYNSRRDLDINRPGTVPNAKTLRCPVMLVVGDNAPAEE 320 330 340 350 360 370 210 220 230 240 250 mKIAA1 AVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMGYMA----------- .::::::::::: :.::::::::: ::.:::::::::::::::::::.: mKIAA1 GVVECNSKLDPTTTTFLKMADSGGLPQVTQPGKLTEAFKYFLQGMGYIAHLKDRRLSGGA 380 390 400 410 420 430 260 270 280 290 300 mKIAA1 --SSCMTRLSRSRTASLTSAASIDGSRSRSRTLSQSSESGTLPSGPPGHTMEVSC :. ::::.::::::::::.:.:::: . . :.:::. : .::::::: mKIAA1 VPSASMTRLARSRTASLTSASSVDGSRPQPCAHSDSSEG----MGQVNHTMEVSC 440 450 460 470 480 490 308 residues in 1 query sequences 1768709 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:39:15 2006 done: Mon Mar 27 10:39:16 2006 Scan time: 0.510 Display time: 0.010 Function used was FASTA [version 3.4t11 Apr 17, 2002]