FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0266.ptfa, 770 aa
 vs ./tmplib.26680 library

1768247 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.8971+/-0.00622; mu= 2.2283+/- 0.411
 mean_var=245.3775+/-57.742, 0's: 0 Z-trim: 4  B-trim: 0 in 0/36
 Lambda= 0.0819

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0336  ( 1693 res)   mbg01823                  (1693)  205   38  0.0092


>>mKIAA0336  ( 1693 res)   mbg01823                       (1693 aa)
 initn:  49 init1:  49 opt: 205  Z-score: 142.0  bits: 38.2 E(): 0.0092
Smith-Waterman score: 212;  20.699% identity (23.547% ungapped) in 744 aa overlap (13-685:581-1305)

                                 10        20        30        40  
mKIAA0                   ATAMNSIKATKGLLALSQQDDLMDLTSNYPLSASEDEGDSDG
                                     : .:.:.: ...       : .... :  .
mKIAA0 GENEKLLSQQELVPELESTIKNLQADNSMYLASLGQKDTMLQELEAKISSLAKEKDDFIS
              560       570       580       590       600       610

             50        60        70        80        90            
mKIAA0 ERKHQKLLEAIGSLSGKNRWKLPERSEAGLKVSEFNVSSEGSGEKLALSDLLGPL-----
       . : ..  : . .:  :  :.  .:  . :. .  ......:  .  .:.: : :     
mKIAA0 KIKTSH--EEMDDLHQK--WEREQRLSVELREAAGQAAQHNSELRQRVSELTGKLDELVR
                620         630       640       650       660      

          100       110       120       130        140       150   
mKIAA0 ---KPSSSLAAVKKQLSRVKSKKTLELPLHKREVEQIHREVA-FSKTSQTLSKWDSVVQK
          . ..:...  : ... .   . ..    .: ...: : : .:.  ..:.  .. ..:
mKIAA0 EKSQNDQSITVQMKTMTEDQEALSSKIKSLYEENNRLHSEKAQLSRDLEALQAQQDFAHK
        670       680       690       700       710       720      

                160       170          180       190       200     
mKIAA0 NREAE-----QLVFPLEKEPSSFAPMEHV---FREWKARTPLEQEVFNLLHKNKQPVTDP
       .. ::     ::.   . . ...   :.:   : . .    :.:   ..:..:..  .  
mKIAA0 EHVAEFEKKLQLMVEERDDLNKLLENEQVQKSFVKTQLYEYLKQLRASILEENEEEDVVK
        730       740       750       760       770       780      

         210       220            230        240        250        
mKIAA0 LLTPVEKASLKAMSLE-----EAKIRRAELQ-RARALQSYYEARARRMKK-IKSKKYHKI
       :.  : .. .:.   :     :   :  ::. . . ::    .. ....  ..... .::
mKIAA0 LIQAVGESLVKVKEEEHNLVFEYDARVLELENKIKCLQEDSAVQCEELRTLVRDSEQEKI
        790       800       810       820       830       840      

      260              270       280                         290   
mKIAA0 VKKGK------AKKALK-DFEQLRKVDPDAALE------ELEKM------------EKAR
       . . .      ::.::. :. ......  :.::      ..:..            ::. 
mKIAA0 LLRKELDAVTSAKEALQLDLLEMKNTNEKASLENQTLSTQVEELSQTLHSRNEVHDEKVL
        850       860       870       880       890       900      

               300        310       320       330       340        
mKIAA0 MME----RMSLKHQNSG-KWAKSKAIMAKYDLEARQAMQEQLAKNKELTQKLQVVSESEE
       ..:    :. ::...:  . .... :. : .::   ....::.  ::: .:..  :  .:
mKIAA0 VIEHENLRLLLKQRESELQDVRAELILLKDSLEKSPSVKDQLSLVKELEEKIE--SLEKE
        910       920       930       940       950         960    

      350       360       370       380       390       400        
mKIAA0 EGGADEEEALVPDIVNEVQKTADGPNPWMLRSCSRDAKENEIQADSEQLPESAA-HEFPE
           ::. . .  .. ...:  :.      :. ..  .:.  .. ::.   ::. .:: .
mKIAA0 SKDKDEKISKIKLVAVKAKKELDSN-----RKEAQTLREELESVRSEKDRLSASMKEFLQ
          970       980            990      1000      1010         

       410        420       430       440       450            460 
mKIAA0 NEENDKPVA-EEDELLKELEKRRSLRKRSELNQAAEPLGNQETKDSTSQ-EVLS----EL
       . :. : .  : :.  ..:. ..  ..  ....  : : .:  ..:: : : :.    .:
mKIAA0 GAESYKSLLLEYDKQSEQLDVEK--ERAHNFERHIEDLTKQ-LRNSTCQYERLTSDNEDL
    1020      1030      1040        1050       1060      1070      

             470       480       490       500       510       520 
mKIAA0 RALSKKLSKENHLSKKQKKSPAKAVDLVWEEEPAPEEDEPLLLQRPERMRTLEELEELGK
        :  . :. . .: . :     ::  .: .:  : : ..   ..  :.. :..:::::  
mKIAA0 LARIETLQANAKLLEAQILEVQKAKGVVEKELDAEELQKEQKIK--EHVSTVNELEELQL
       1080      1090      1100      1110      1120        1130    

             530       540           550       560       570       
mKIAA0 EDSLPNKERPRPSVEGEQVRRNPQNHS----KGKNKKEQMISLQNLLTTRTPSVTSLALP
       . .  .:.  .   : : :... :. .    .  . .. :  :.. ::... .. .:   
mKIAA0 QFQKEKKQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKELNQKLTNKNSTIEDLEQE
         1140      1150      1160      1170      1180      1190    

       580       590           600        610       620       630  
mKIAA0 TTVEELEDEGARDQ----KQMIKEAFAGDDVIKEFL-KEKREAIQANKPKAVDLTLPGWG
         ... ..:  ...    .. ...    .  ::..: : :.:  .:.. ..  : : .  
mKIAA0 MKIQKEKQETLQEEITSLQSSVQHYEEKNTKIKQLLVKTKKELADAKQAETDHLLLQA--
         1200      1210      1220      1230      1240      1250    

            640       650       660       670        680       690 
mKIAA0 EWGGMNLKPSARKRRRFLIKAPEGPPRKDKNLPNVIIS-EKRNIHAAAHQVRVLPYPFTH
          : .:. : .. . . :.  :   .: :   ..  : :...   .:.: ::.      
mKIAA0 SLKG-ELEASQQQVEVYKIQLAEMTSEKHKIHEHLKTSAEQHQRTLSAYQQRVVALQEES
            1260      1270      1280      1290      1300      1310 

             700       710       720       730       740       750 
mKIAA0 HQQFERTIQNPIGSTWNTQRAFQKLTAPKVVTKPGHIIKPITAEDVDCRSSPRSDVPVMQ
                                                                   
mKIAA0 RAAKAEQAAVTSEFESYKVRVHNVLKQQKNKSVSQVETEGAKQEREHLEMLIDQLKIKLQ
            1320      1330      1340      1350      1360      1370 




770 residues in 1 query   sequences
1768247 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:16:09 2006 done: Mon Mar 27 10:16:10 2006
 Scan time:  0.930 Display time:  0.070

Function used was FASTA [version 3.4t11 Apr 17, 2002]