FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0561.ptfa, 415 aa vs ./tmplib.26680 library 1768602 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 13.6460+/-0.00897; mu= -26.5054+/- 0.592 mean_var=551.7422+/-132.967, 0's: 0 Z-trim: 4 B-trim: 2 in 1/35 Lambda= 0.0546 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0807 ( 1432 res) mbg07407 (1432) 1278 115 3.2e-26 mKIAA0973 ( 1202 res) mbg08419 (1202) 913 86 1.3e-17 >>mKIAA0807 ( 1432 res) mbg07407 (1432 aa) initn: 1090 init1: 846 opt: 1278 Z-score: 563.1 bits: 115.0 E(): 3.2e-26 Smith-Waterman score: 1293; 53.776% identity (58.603% ungapped) in 437 aa overlap (2-405:683-1116) 10 20 30 mKIAA0 GRVPKSASVSALSLIITADDGSGGPLMSPLS .: ::::..::::.: .. . .:: ::.: mKIAA0 KAISDLAVRRARHRLLSGDSIEKRTTRPVNKVIKSASATALSLLIPSEHHACSPLASPMS 660 670 680 690 700 710 40 50 60 70 80 90 mKIAA0 PRSLSSNPSSRDSSPSRDPSPVCGSLRPPIVIHSSGKKYGFSLRAIRVYMGDSDVYTVHH :.: :::::::::::::: :. :::::::.:: .::::::.::::::::::.::::::: mKIAA0 PHSQSSNPSSRDSSPSRDFLPALGSLRPPIIIHRAGKKYGFTLRAIRVYMGDTDVYTVHH 720 730 740 750 760 770 100 110 120 130 140 150 mKIAA0 VVWSVEEGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTALENTS .:: ::.:.::.::::: ::::::.::: : :::: .::::.::::::.:. :: ::::: mKIAA0 MVWHVEDGGPASEAGLRQGDLITHVNGEPVHGLVHTEVVELVLKSGNKVSISTTPLENTS 780 790 800 810 820 830 160 170 180 190 200 mKIAA0 IKVGPARKNVAKGRMARRSKRSRRRETQDRRK--SLFKRISKPSSVLHTSRSFSSGLQHS ::::::::. :..::::::::. .. :. :: :::..:.: .:.::::::.:: :..: mKIAA0 IKVGPARKGSYKAKMARRSKRSKGKDGQESRKRSSLFRKITKQASLLHTSRSLSS-LNRS 840 850 860 870 880 890 210 220 230 240 250 260 mKIAA0 LSSSESLPGSPTHSLSPSPTTPCRS--PAPDA-PTDTASPPNVSPSSSSPASPA-TGHTR :::.:: ::::::: : :: .: .. :::: . : . ::::: :.::: .:::: mKIAA0 LSSGESGPGSPTHSHSLSPRSPPQGYRVAPDAVHSGGNSSQSSSPSSSVPSSPAGSGHTR 900 910 920 930 940 950 270 280 290 300 310 mKIAA0 PSSLHGLAAKLGPPRHKSGRRKSTSSIPPSPLACPPVP----TPPPRSPSPLPGH----I :::::::: :: ...: ::::..::: :::: : : . : :::::: :: . mKIAA0 PSSLHGLAPKL-QRQYRSPRRKSAGSIPLSPLAHTPSPPATAASPQRSPSPLSGHGSQSF 960 970 980 990 1000 1010 320 330 340 350 mKIAA0 PI-------------------PARSPRLRRGQSADKLGLGTSERLDGDGGRRARGAEAEL : : ::: :.: :::.::. . . . : .. . mKIAA0 PTKLHLSPPLGRQLSRPKSAEPPRSPLLKRVQSAEKLAAALAAAEKKLAPSRKHSLDLPH 1020 1030 1040 1050 1060 1070 360 370 380 390 400 410 mKIAA0 VVMRRLHLSERRDSFKKQEAVQEVSFDEEPGPPRGVPKIAVQGAEATPGTPGHARKD ... .:. :. : . ... : . : : .:: . : . : .: mKIAA0 GELKK-ELTPREASPLEVVGTRSVLSGKGPLPGKGVLQPAPSRALGTLRQDRAERRESLQ 1080 1090 1100 1110 1120 mKIAA0 KQEAIREVDSSEDDTDEEPENSQATQEPRLSPHPEASHNLLPKGSGEGTEEDTFLHRDLK 1130 1140 1150 1160 1170 1180 >>mKIAA0973 ( 1202 res) mbg08419 (1202 aa) initn: 914 init1: 784 opt: 913 Z-score: 408.8 bits: 86.1 E(): 1.3e-17 Smith-Waterman score: 1013; 45.721% identity (57.507% ungapped) in 444 aa overlap (1-410:589-975) 10 20 mKIAA0 GRVPKSASVSALSLIITADDGSGG-PLMSP :.: ::::..:::..: : : :: :: :: mKIAA0 RATNDLVLRRARHQQLSGDLAVEKRPSRTGGKVIKSASATALSVMIPAVDPHGGSPLASP 560 570 580 590 600 610 30 40 50 60 70 80 mKIAA0 LSPRSLSSNPSSRDSSPSRDPSPVCGSLRPPIVIHSSGKKYGFSLRAIRVYMGDSDVYTV .::::::::::::::::::: ::. ..:: ::.:. :::::::.::::::::::::::.: mKIAA0 MSPRSLSSNPSSRDSSPSRDYSPAVSGLRSPITIQRSGKKYGFTLRAIRVYMGDSDVYSV 620 630 640 650 660 670 90 100 110 120 130 140 mKIAA0 HHVVWSVEEGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTALEN ::.:: ::::.::::::: :::::::.::: : :.:: .::::.::::::... :: .:: mKIAA0 HHIVWHVEEGGPAQEAGLCAGDLITHVNGEPVHGMVHPEVVELILKSGNKVAVTTTPFEN 680 690 700 710 720 730 150 160 170 180 190 200 mKIAA0 TSIKVGPARKNVAKGRMARRSKRSRRRETQDRRKSLFKRISKPSSVLHTSRSFSSGLQHS :::..::::.. :..::::.:: .. :.: :..: .:: :: mKIAA0 TSIRIGPARRSSYKAKMARRNKRPSAKDGQER-----------SGALSFGRSQSSRT--- 740 750 760 770 780 210 220 230 240 250 260 mKIAA0 LSSSESLPGSPTHSLSPSPTTPCRSPAPDAPTDTASPPNVSPSSSSPASPATGHTRPSSL :. ..: ::. .:: .:::: :. : :::.: mKIAA0 --------GASSQSSSPASSTP----------------------NSPASSASHHIRPSTL 790 800 810 270 280 290 300 310 mKIAA0 HGLAAKLGPPRHKSGRRKSTSSIPPSPLACPPVPTPPPRSPSPLPGHI------------ :::. :: ...:.: ::...:: :::: : :: :: ::::: mKIAA0 HGLSPKLHR-QYRSARCKSAGNIPLSPLAHTPSPTQA--SPPPLPGHTVGSSHTTQSFPA 820 830 840 850 860 870 320 330 340 350 360 mKIAA0 ------PI---------PARSPRLRRGQSADKLGLGTSERLDGDGGRRARGAEAELVVMR :. : ::: :.: :::.::: .: : :. : .. :. mKIAA0 KLHSSPPVVRPRPKSAEPPRSPLLKRVQSAEKLG--ASLGADKKGALRKHSLEVG----- 880 890 900 910 920 370 380 390 400 410 mKIAA0 RLHLSERRDSFKKQEAVQEVSFDEEPGPPRGVP----KIAVQ--GAEATPGTPGHARKD : . :.: :. . :.. .. .. :: : ..::. : . .: . : mKIAA0 --HPDFRKD-FHGELALHSLAESDGETPPIEGPGATRQVAVRRLGRQESPLSLGADPLLP 930 940 950 960 970 980 mKIAA0 DGVQRPMASSKEDSAGGTEACTPPRATTPGSRTLERDSGCTRHQSVQTEDGPGGVARALA 990 1000 1010 1020 1030 1040 415 residues in 1 query sequences 1768602 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:23:10 2006 done: Mon Mar 27 10:23:11 2006 Scan time: 0.660 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]