FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1959.ptfa, 461 aa vs ./tmplib.26680 library 1768556 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.4117+/-0.00392; mu= 15.7524+/- 0.263 mean_var=71.8620+/-16.782, 0's: 0 Z-trim: 6 B-trim: 161 in 1/35 Lambda= 0.1513 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mFLJ00204 ( 618 res) msp00191 ( 618) 149 42 0.00016 mKIAA1296 ( 1304 res) mfj01232 (1304) 152 43 0.00016 mKIAA0777 ( 1134 res) mbg09833 (1134) 145 41 0.00043 mFLJ00261 ( 183 res) mid06072 ( 183) 133 38 0.00078 mKIAA1494 ( 914 res) mpm09319 ( 914) 140 40 0.00079 >>mFLJ00204 ( 618 res) msp00191 (618 aa) initn: 163 init1: 98 opt: 149 Z-score: 173.7 bits: 41.8 E(): 0.00016 Smith-Waterman score: 149; 44.444% identity (48.000% ungapped) in 54 aa overlap (74-127:206-255) 50 60 70 80 90 100 mKIAA1 QNIDVKLGCDWVATIFSRDIRFANHETLQVIYPYSPQNDDELELVPGDFIFMSPMEQTST .: :.::..::::: :.. . .:. . mFLJ00 VPTALPRAAAVAGEQGMSPKVQLPLNVYLALYAYKPQKNDELELRKGEMYRV--LEKCQ- 180 190 200 210 220 230 110 120 130 140 150 160 mKIAA1 SEGWIYGTSLTTGCSGLLPENYITKADECSTWIFHGSYSILNTVSSSSLAFGDGALERRQ .::. :.:: :: ::..: ::.: mFLJ00 -DGWFKGASLKTGVSGVFPGNYVTPVSRVPGGGAGLPWNNVLGGSPLAKGMATIMHPGGG 240 250 260 270 280 290 >>mKIAA1296 ( 1304 res) mfj01232 (1304 aa) initn: 130 init1: 78 opt: 152 Z-score: 173.4 bits: 42.9 E(): 0.00016 Smith-Waterman score: 152; 45.614% identity (49.057% ungapped) in 57 aa overlap (70-126:1247-1299) 40 50 60 70 80 90 mKIAA1 EKLAQNIDVKLGCDWVATIFSRDIRFANHETLQVIYPYSPQNDDELELVPGDFIFMSPME . :..: : ::::::::: ::.. . :: mKIAA1 SRSATVSPQQPQAQQRRVTPDRSQPSLDLCSYQALYSYVPQNDDELELRDGDIV--DVME 1220 1230 1240 1250 1260 1270 100 110 120 130 140 150 mKIAA1 QTSTSEGWIYGTSLTTGCSGLLPENYITKADECSTWIFHGSYSILNTVSSSSLAFGDGAL . . .::. ::: : : .: ::. mKIAA1 KCD--DGWFVGTSRRTRQFGTFPGNYVKPLYL 1280 1290 1300 >>mKIAA0777 ( 1134 res) mbg09833 (1134 aa) initn: 140 init1: 70 opt: 145 Z-score: 165.9 bits: 41.3 E(): 0.00043 Smith-Waterman score: 145; 37.143% identity (39.394% ungapped) in 70 aa overlap (59-128:1068-1133) 30 40 50 60 70 80 mKIAA1 YHFQASHLPTLEKLAQNIDVKLGCDWVATIFSRDIRFANHETLQVIYPYSPQNDDELELV ::.. .. : .:..: :.:.:.::::: mKIAA0 AEDYPDPPLPHSYSSDRIYTLSSNKPQRPGFSHENIQGGGEPFQALYNYTPRNEDELELR 1040 1050 1060 1070 1080 1090 90 100 110 120 130 140 mKIAA1 PGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADECSTWIFHGSYSILNTVS .: . . ::. . .::. ::: : : .: ::. . mKIAA0 ESDVV--DVMEKCD--DGWFVGTSRRTKFFGTFPGNYVKRL 1100 1110 1120 1130 150 160 170 180 190 200 mKIAA1 SSSLAFGDGALERRQYEDQGLGETTPLTIICQPMQPLRVNSQPGPQKRCLFVCRHGERMD >>mFLJ00261 ( 183 res) mid06072 (183 aa) initn: 136 init1: 66 opt: 133 Z-score: 161.2 bits: 37.8 E(): 0.00078 Smith-Waterman score: 133; 25.197% identity (28.070% ungapped) in 127 aa overlap (2-122:29-148) 10 20 30 mKIAA1 AADFAAEAASKTEVHVE-PHKKQLHVTLAYHFQ : :.. . : :.... :::. ... : .. : mFLJ00 GWVKFQNSRLRLKRLLSCRGSRFLVFDHAPFSSIRGEKCEMKLHGPHKNLFRLFLLHNAQ 10 20 30 40 50 60 40 50 60 70 80 mKIAA1 ASHLPTLEKLAQNIDVKLGCDWV-ATIFSRD----IRFANHETLQVIYPYSPQNDDELEL .... : . . . :: :. : . :. .. . .: . :.:...::: : mFLJ00 GTQVEFLFRTETQSE-KL--RWISALAMPREELDLLECYDSPQVQCLRAYKPRENDELAL 70 80 90 100 110 90 100 110 120 130 140 mKIAA1 VPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADECSTWIFHGSYSILNTV .: .... .:.: .::. :. :. : .: .: mFLJ00 EKADVVMVT--QQSS--DGWLEGVRLSDGEQGWFPVQQVEFISNPEVRAQNLKEAHRVKT 120 130 140 150 160 170 150 160 170 180 190 200 mKIAA1 SSSSLAFGDGALERRQYEDQGLGETTPLTIICQPMQPLRVNSQPGPQKRCLFVCRHGERM mFLJ00 AKLQLVEQQV 180 >>mKIAA1494 ( 914 res) mpm09319 (914 aa) initn: 198 init1: 87 opt: 140 Z-score: 161.1 bits: 40.1 E(): 0.00079 Smith-Waterman score: 140; 41.509% identity (44.898% ungapped) in 53 aa overlap (74-126:482-530) 50 60 70 80 90 100 mKIAA1 QNIDVKLGCDWVATIFSRDIRFANHETLQVIYPYSPQNDDELELVPGDFIFMSPMEQTST ::::.:...::::: :..... : mKIAA1 AAGMGPRPVMGSSEQIAHLRPQTRPSVYVAIYPYTPRKEDELELRKGEMFLVFERCQ--- 460 470 480 490 500 110 120 130 140 150 160 mKIAA1 SEGWIYGTSLTTGCSGLLPENYITKADECSTWIFHGSYSILNTVSSSSLAFGDGALERRQ .:: :::. :. :..: ::.. mKIAA1 -DGWYKGTSMHTSKIGVFPGNYVAPVTRAVTNASQAKVSMSTAGQASRGVTMVSPSTAGG 510 520 530 540 550 560 461 residues in 1 query sequences 1768556 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:56:34 2006 done: Mon Mar 27 10:56:35 2006 Scan time: 0.650 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]