FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0020.ptfa, 496 aa vs ./tmplib.26680 library 1768521 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.9280+/-0.00433; mu= 13.1762+/- 0.289 mean_var=90.4329+/-21.180, 0's: 0 Z-trim: 2 B-trim: 4 in 1/35 Lambda= 0.1349 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0099 ( 1218 res) mbg05872 (1218) 250 59 1.8e-09 mKIAA0235 ( 969 res) mbh00517 ( 969) 149 40 0.0013 >>mKIAA0099 ( 1218 res) mbg05872 (1218 aa) initn: 111 init1: 67 opt: 250 Z-score: 262.2 bits: 59.3 E(): 1.8e-09 Smith-Waterman score: 250; 20.455% identity (22.420% ungapped) in 308 aa overlap (9-301:873-1168) 10 20 30 mKIAA0 EKRVKLMSDLQ-KLIQGKIKTIAFAHDSTRVIQCFIQY .:: . : :.: .. . ..: :: .. mKIAA0 SSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLER 850 860 870 880 890 900 40 50 60 70 80 90 mKIAA0 GNEEQRKQAFQELQGDLVELSKAKYSRNIVKKFLMYGSKPQVAEIIRSFKGHVRKMLRHS .. .:. .:.:. .: .. ...::. .::. : . . ..::: .. . mKIAA0 ATAAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQM 910 920 930 940 950 960 100 110 120 130 140 150 mKIAA0 EASAIV----EYAYNDKAILEQRNMLTEELYGNTFQLYKSAD-HPTLDKVLE-LQPAKLE . .. :. .:. .. : ...:: :.... :. . . ...: .: .:: .:. mKIAA0 YGCRVIQKALEFIPSDQQVI---NEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQ 970 980 990 1000 1010 160 170 180 190 200 210 mKIAA0 LIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKPRSELIEAIREAVVYLAHTHD .:.: .: .: :. : .:. .. . : ..: ... . :.. . mKIAA0 FIIDAFK------GQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQY 1020 1030 1040 1050 1060 1070 220 230 240 250 260 270 mKIAA0 GARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLAAFDCIDD-TKLVKQIII : : .: : :: :.:.. :: .. : ... ... :. :. .. . ..: mKIAA0 GNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEK---CVTHASRTERAVLI 1080 1090 1100 1110 1120 1130 280 290 300 310 320 mKIAA0 SEII-------SSLPSIVNDKYGRKVLLYLMSPRDPAHTVPELIELLQKGDGNAHSKKDT .:. :.: ....:.:. :. ... .:.. mKIAA0 DEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGK 1140 1150 1160 1170 1180 1190 330 340 350 360 370 380 mKIAA0 AIRRRELLESISPALLSYLQGHTQEVVLDKSACVLVSDMLGSATGDVQPAMDAIASLAAA mKIAA0 HILAKLEKYYMKNGVDLGPICGPPNGII 1200 1210 >>mKIAA0235 ( 969 res) mbh00517 (969 aa) initn: 132 init1: 118 opt: 149 Z-score: 157.2 bits: 39.5 E(): 0.0013 Smith-Waterman score: 241; 21.053% identity (22.939% ungapped) in 304 aa overlap (10-301:629-919) 10 20 30 mKIAA0 EKRVKLMSDLQKLIQGKIKTIAFAHDS--TRVIQCFIQY :. :: :.: . :..:. .: :: .. mKIAA0 RLRYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLI-GHI--VEFSQDQHGSRFIQQKLER 600 610 620 630 640 650 40 50 60 70 80 90 mKIAA0 GNEEQRKQAFQELQGDLVELSKAKYSRNIVKKFLMYGSKPQVAEIIRSFKGHVRKMLRHS .. .:. .:.:. .: .. ...::. .:: : . ..::: . . mKIAA0 ATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQM 660 670 680 690 700 710 100 110 120 130 140 150 mKIAA0 EASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSAD-HPTLDKVLE-LQPAKLELIMD . ... : .. . .: .:. .:: :.... :. . . ...: .: .:: .:..:.: mKIAA0 YGCRVIQKALESISSDQQSEMV-KELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIID 720 730 740 750 760 770 160 170 180 190 200 210 mKIAA0 EMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKPRSELIEAIREAVVYLAHTHDGARV .: .: .. : .:. .. . . ..: ... . :.. . : : mKIAA0 AFK------GQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYV 780 790 800 810 820 220 230 240 250 260 270 mKIAA0 AMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLAAFDCIDD-TKLVKQIIISEII .: : :: :.:.. ::. .. : ... ... :. :. .. . ..:.:. mKIAA0 IQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEK---CVTHASRAERALLIDEVC 830 840 850 860 870 880 280 290 300 310 320 mKIAA0 -------SSLPSIVNDKYGRKVLLYLMSPRDPAHTVPELIELLQKGDGNAHSKKDTAIRR :.: ....:.:. :. ... .::. mKIAA0 CQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILA 890 900 910 920 930 940 330 340 350 360 370 380 mKIAA0 RELLESISPALLSYLQGHTQEVVLDKSACVLVSDMLGSATGDVQPAMDAIASLAAAELHP mKIAA0 KLEKYYLKNSPDLGPIGGPPNGML 950 960 496 residues in 1 query sequences 1768521 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:10:41 2006 done: Mon Mar 27 10:10:42 2006 Scan time: 0.700 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]