FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mFLJ00268.ptfa, 241 aa
 vs ./tmplib.26680 library

1768776 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.4577+/-0.00389; mu= 13.0993+/- 0.260
 mean_var=73.9822+/-16.772, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.1491

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1822  ( 636 res)   mph01602                   ( 636)  237   60 2.8e-10


>>mKIAA1822  ( 636 res)   mph01602                        (636 aa)
 initn: 232 init1: 171 opt: 237  Z-score: 276.9  bits: 60.0 E(): 2.8e-10
Smith-Waterman score: 237;  40.336% identity (42.105% ungapped) in 119 aa overlap (117-231:513-630)

         90       100       110       120       130         140    
mFLJ00 IRTDVFHCVGTEPHLLSCPTSTLGAQACALGNSASALCSGLQDALRLRE--GQSHCDGRV
                                     :  ..:.    . ..:: .  : :   :::
mKIAA1 AAPPAPTPRPTKPARPTRRPGARKGGGRRRGRPSTAVPEPENGSVRLVRPAGLSPGRGRV
            490       500       510       520       530       540  

          150       160       170       180        190       200   
mFLJ00 EVFLDGTWGRVLDSAWDLRDAAVVCRQLGCGEAQLAYDAPAPGH-KTIPVGLSLVHCLGS
       :::. : :: : :.::: . ::::::::: ..:  :      :. ... . :. :.: ::
mKIAA1 EVFIGGRWGTVCDDAWDTKAAAVVCRQLGFAHAVRAAKRAEFGEGRALRILLDDVRCAGS
            550       560       570       580       590       600  

           210       220        230       240 
mFLJ00 ETHLTQCNVSASLLVHAGTL-RDAGVVCSGECEVSTCPP
       : .: .: . :.. .:     .:::: ::          
mKIAA1 ERNLLEC-AHAGVGTHNCKHDEDAGVECSHQDPNL    
             610       620       630          




241 residues in 1 query   sequences
1768776 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:08:49 2006 done: Mon Mar 27 10:08:50 2006
 Scan time:  0.410 Display time:  0.000

Function used was FASTA [version 3.4t11 Apr 17, 2002]