FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1471.ptfa, 801 aa vs ./tmplib.26680 library 1768216 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 15.3888+/-0.0114; mu= -30.4195+/- 0.753 mean_var=849.6232+/-203.818, 0's: 0 Z-trim: 27 B-trim: 0 in 0/36 Lambda= 0.0440 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0458 ( 882 res) mbg00904 ( 882) 488 47 1.5e-05 mKIAA0595 ( 1646 res) mbg04268 (1646) 415 42 0.00056 mKIAA1076 ( 855 res) mbh01320 ( 855) 400 41 0.0007 mKIAA1172 ( 1200 res) mfj66157 (1200) 386 40 0.0016 mKIAA0522 ( 646 res) mbp09103 ( 646) 348 38 0.0057 >>mKIAA0458 ( 882 res) mbg00904 (882 aa) initn: 288 init1: 200 opt: 488 Z-score: 192.0 bits: 46.5 E(): 1.5e-05 Smith-Waterman score: 536; 32.177% identity (39.857% ungapped) in 519 aa overlap (84-586:4-438) 60 70 80 90 100 110 mKIAA1 RLSPGQPDLWRLALLPCLSLRELKKKAPPPRPTAPKPLLSRREEGEAVEAGDTPEELRSL ::..:. . :::. .. .. .: : mKIAA0 EISRPNSPS-----EGEGESSDSRSVNDEGSSD 10 20 120 130 140 150 160 170 mKIAA1 PPDMMVGPRLPDPFLGTTAPLHFSPGPFPS-STGPATHYLSGPLPPGTYSGPTQLMQPRA : :. : .: . : :: : : . : . . ::. :. : . mKIAA0 PKDIDQDNRSTSP----SIP---SPQDNESDSDSSAQQQMLQAQPPA-------LQAPSG 30 40 50 60 70 180 190 200 210 220 230 mKIAA1 AVPMAPATVLYPAPAYTSELGLVPRSSPQHGIVSSPYAGVGPPQPVVGLP--SAPPPQLS :. ::.: :: : .: : ..: .: : . ::: : : : :: : . mKIAA0 AAS-APST----APPGTPQL---PTQGP------TPSATAVPPQ---GSPATSQPPNQTQ 80 90 100 110 240 250 260 270 280 mKIAA1 GPELAMTVRPATTTVDSVQAPISSHTAPR-PNPTPALPQPCFPVPQPVPQSVPQPQPLPV . :: ::. : ::: . : :: :.: : : :. : :: ::.: : mKIAA0 S-----TVAPAAHT-HIQQAP-TLHP-PRLPSPHP----PLQPMTAPPSQSSAQPHPQP- 120 130 140 150 160 290 300 310 320 330 340 mKIAA1 PYTYSIGTKQPLPAPYTYSIGTKQHLTGPLPQHQFPPGIPTGFPVPRTGPQAQAQPQPQP :. . : :.:.. . :::: :: :: : : .: :.:. :.: mKIAA0 ----SLHGQGP-PGPHSLQ-------TGPLLQH---PGPPQPFGLPSQPSQGQGPLGPSP 170 180 190 200 350 360 370 380 390 400 mKIAA1 QPQPQPQPQPQPQPQPQSQSQPQPQPQPQPQRPAFGPQPTQQPLPFQHPHLFPSQAPGIL .:. : : ::: ::: :. : : : : :. ::. : : mKIAA0 AAA-HPHSTIQ---LPASQSALQPQQPPREQ-----PLP---PAPLAMPHIKP---PPTT 210 220 230 240 250 410 420 430 440 450 460 mKIAA1 PPPP-PTPYHFTPQPGVLGQPPPTLHTQLYPGPSQDPLPPHSGALPFPSPGPPHPHPTLA : : :.: : . : : .:...: : :. :: : : :: :: : : mKIAA0 PIPQLPAPQAHKHPPHLSGPSPFSLNANLPPPPALKPLSSLSTHHP-PSA---HP-PPLQ 260 270 280 290 300 470 480 490 500 510 520 mKIAA1 YGPAPSPRPLGPQATP---VSIRGPPPA-SQPTPSPHLVPSPAPSPGPGPVPSRPPTAEP : .: : .: : : :::: :.:: . : ::: .: : ::. :: : mKIAA0 LMPQSQPLPSSPAQPPGLTQSQSLPPPAASHPTTGLHQVPSQSPFPQHPFVPGGPPPITP 310 320 330 340 350 360 530 540 550 560 570 mKIAA1 PPCLRRGAAAADLLSSS--PES---QHGGTQP--PGGGQPLLQPTKVDAAEGRRPQALRL : : .. : ::: : : . ::. : :. : .: . :...:.. mKIAA0 PSCPPTSTPPAGPSSSSQPPCSAAVSSGGSVPGAPSCPLPAVQIKEEALDEAEEPESPPP 370 380 390 400 410 420 580 590 600 610 620 630 mKIAA1 IEQDPYEHPERLQQLQQELEAFRGQLGDAGALDAIWRELQEAQEHDARGRSIAIARCYSL ..: .: mKIAA0 PPRSPSPEPTVVDTPSHASQSARFYKHLDRGYNSCARTDLYFMPLAGSKLAKKREEAIEK 430 440 450 460 470 480 >>mKIAA0595 ( 1646 res) mbg04268 (1646 aa) initn: 143 init1: 143 opt: 415 Z-score: 163.7 bits: 42.2 E(): 0.00056 Smith-Waterman score: 483; 26.106% identity (31.606% ungapped) in 701 aa overlap (69-684:565-1228) 40 50 60 70 80 90 mKIAA1 PAAPGQVGVVFRLHCRLSPGQPDLWRLALLPCLSLRELKKKAPPPRPTAP--KPLLSRRE : ::: . . : .. .: .. mKIAA0 NLERSAGQDSPAEEDALDLCPKLLETSQANPTLSLNDSAQADSMPVDSVEGDSPAVGNAA 540 550 560 570 580 590 100 110 120 130 140 150 mKIAA1 EGEAVEAGDTPEELRSLPPDMMVGPRLPDPFLGTTAPLHFSPG-PFPSSTGPA----THY :. . .: : . ::: ::: : .: :. .. . . : .. .:: . mKIAA0 PGDQASSGT--ELVGSLP----VGPNLTSPVLADKKGIEPAVAVPTSDNLSPADVLANTV 600 610 620 630 640 160 170 180 190 200 210 mKIAA1 LSGPLPPGTYSGPTQLMQPRAAVPMAPATVLYPAPAYTSELGLVPR-SSPQHGIVSSPYA . :.: . :.. : . : : : : .. : : .: .: : :: . mKIAA0 AADPVPNDPAPADPVLVKCRPTDPRRAA-----AAAAAAAQGSRPSLQSADHPKVVSPEG 650 660 670 680 690 700 220 230 240 250 260 mKIAA1 G--VGPPQPVVGLPSAP-----PPQLSGPELAMTVRPATTTVD--SVQAPISSHTAPRPN ::: . : : :: : :: : . . : .. . : :. .. :. mKIAA0 KDVVGPLK-VEGSTSATTQEAKPRPLSLSEYRQRRQQRQTEAEDRNSQPPVVGKWPSLPE 710 720 730 740 750 760 270 280 290 300 310 mKIAA1 -PTPALPQPCFPVPQPVPQSVPQPQPLPVPYTYSIGTK--QPLPAPYTYSIGTKQHLTGP :: ::. :. ...:: .:. :: : :.:.. .: : : . .. .. : . mKIAA0 TPTELADIPCLVPSAPARKTAPQRSPIAVPETVSVGSNPVSPTPEPSASKLMVSTH-SEQ 770 780 790 800 810 820 320 330 340 350 360 370 mKIAA1 LPQHQFPPGI-PTGFPVPRTGPQAQAQPQPQPQPQPQPQPQPQPQPQPQSQSQPQ----- . .:..: .. : :.: ..: : : :. : : : : : : : :. mKIAA0 VSSHEMPLAVRPPPPPLPSVSP---AGPIPSTVPAPLP---PFPPSVPPLLSLPSGGHGV 830 840 850 860 870 380 390 400 410 420 mKIAA1 PQPQPQPQRPA--------FGPQPTQQPLPFQHPHLFPS-QAPGI--LPPPPPTPYHFTP :. : : .: . :.: : : .:: . :: ::::: : . mKIAA0 PRLPPPPLQPPGLPVSMRQMPPDPYTQYAPVPPWSCYPSVSPPGYSCLPPPPTMPI-VSG 880 890 900 910 920 930 430 440 450 460 mKIAA1 QPGVLGQPPPTLHTQLYPGPSQDPLPPHS-----GAL---------PFPSPGPPHPHPTL ::. . :: : .. : :. :. :.: :.: :: : : : .. mKIAA0 TPGTYAVPP-TCNVPWVPPPA--PVSPYSSSCAYGSLGWGPGLQQPPFWSTVSPPPLSSV 940 950 960 970 980 990 470 480 490 500 510 520 mKIAA1 AYGPAPSPRPLGPQATPVSIRGPPPASQPTP-SPHLVPSPAPSPGPGPVPSRPPTAEPPP : : : :. :.. :.: :: : : .: : .:: ::. :: : :.: : mKIAA0 PTGRAVPPTPVEPSGDPAS---PPEDVLPGPVTPSLSSGPA-SPAAPPVEPTKPEAQPVP 1000 1010 1020 1030 1040 530 540 550 560 570 mKIAA1 CLRRGAAAADLLSSSPESQHGGTQPPGG---GQPLLQPTKVDAAEGR---RP--QALRLI . .. : .::. . : : . . . : .. :.: .: :.. . mKIAA0 VSPQPKHKVSTLVQSPQIKAPPTLSTEGVVFEESVSERLKSETQENRPKEKPISTAIKSV 1050 1060 1070 1080 1090 1100 580 590 600 610 mKIAA1 ---EQD-----PYEHPERLQQL-----------QQELEAFRGQLG-DAGALDAIWRELQ- .:. : :: ::..: .. ..:: ...: .:. :... .... mKIAA0 PVPKQSAVAKLPAVHPARLRKLSFLPTPRAQGPEDVVQAFISEIGIEASDLSSLLEQFEK 1110 1120 1130 1140 1150 1160 620 630 640 650 660 670 mKIAA1 -EAQEH---DARGRSIAIARCYSLKNRHQDVMPYDSNRVVLRSGKDDYINASCVEGLSPY ::... : . :.:.. :. . :. : : : . : : ::.: mKIAA0 SEAKKECPLPASADSLAVGNSGSI-DIPQEKKPLD------RLQAPELAN---VAGLTPP 1170 1180 1190 1200 1210 680 690 700 710 720 730 mKIAA1 CPPLVATQAPLPGTAADFWLMVHEQKVSVIVMLVSEAEMEKQKVARYFPTERGQPMVHGA : :: mKIAA0 ATPPHQLWKPLAAVSLLAKAKSPKSTAQEGTLKPEGITEAKPPATACLQEGAHSPSPVHV 1220 1230 1240 1250 1260 1270 >>mKIAA1076 ( 855 res) mbh01320 (855 aa) initn: 176 init1: 120 opt: 400 Z-score: 162.0 bits: 40.9 E(): 0.0007 Smith-Waterman score: 431; 27.096% identity (34.236% ungapped) in 513 aa overlap (75-561:129-560) 50 60 70 80 90 100 mKIAA1 VGVVFRLHCRLSPGQPDLWRLALLPCLSLRELKKKAPPPRPTAPKPLLSRREEGEAVEAG :. . : : :. .:. :: . mKIAA1 QDRAEVPLGPRGPMRESLGTEEEVDIEAEDEVPEMQAPELEEPPLPMGARKLEG----SP 100 110 120 130 140 150 110 120 130 140 150 160 mKIAA1 DTPEELR-SLPPDMMVGPRLPDPFLGTTAPLHFSPGPFPSSTGPATHYLSGPLPPGTYSG . ::: . ::...:.:: . . . : : :: . : :: : mKIAA1 EPPEEPGPNTQGDMLLSPELP------ARETEEAQLPSPPEHGPESDLDMEPEPPPMLSL 160 170 180 190 200 170 180 190 200 210 220 mKIAA1 PTQLMQPRAAVPMAPATVLYPAPAYTSELGLVPRSSPQHGIVSSPYAGVGPPQPVVGLPS : .:: :. : .: : : :. : :: :. : mKIAA1 P---LQP----PLPPPRLLRP-----------PSPPPEPETPEPPK----PPVPLEPPPE 210 220 230 240 230 240 250 260 270 280 mKIAA1 APPPQLSGPELAMTVRPATTTVDSV---QAPISSHTAPRPNPTPALPQPCFPVPQPVPQS ::. : ... .: :: .. . :.:. .. .: .: : :.: : mKIAA1 DHPPRTPGLCGSLAKSQSTETVPATPGGEPPLSGGSSGLSLSSPQVPGSPFSYPSPSPGL 250 260 270 280 290 300 290 300 310 320 330 340 mKIAA1 VPQPQPLPVPYTYSIGTKQPLPAPYTYSIGTKQHLTGPLPQHQFPPGIPTGFPVPRTGPQ : .:. : : .::: : .::: :::: mKIAA1 SSGGLPRTPGRDFSFTPTFPEP-------------SGPLLLPVCP--LPTGRRDERTGPL 310 320 330 340 350 350 360 370 380 390 mKIAA1 AQA--QPQPQPQPQPQPQPQPQPQPQPQSQSQPQPQPQPQPQRPA-FGPQPT---QQP-L :. : : : : : : : : ..::.: :: : :: ..: :: ..: mKIAA1 ASPVLLETGLPLPLPLPLPLPLALPVPVLRAQPRPPPQLPPLLPATLAPCPTPIKRKPGR 360 370 380 390 400 410 400 410 420 430 440 450 mKIAA1 PFQHP-HLFPSQAPGILPPPPPT-PYHFTPQPGVLGQPPPTLHTQLYPGPSQDPLPPHSG : . : .. ..: . ::: :. . :: ::: . ..:. ..:: .. mKIAA1 PRRSPPSMLSLDGPLVRPPPGPALGRDLLLLPG---QPP----APIFPS-AHDP---RAV 420 430 440 450 460 460 470 480 490 500 mKIAA1 ALPFPSPGPPHPHPTLAYGPAPSPRPLGPQATPVSIRGPPPASQPTPSPHL---VPSPAP .: : . : : : : : : : : : :: : : .: :: : mKIAA1 TLDFRNTGIPAPPPPLPPQPPPPPPP------------PPVESTKLPFKELDNQWPSEAI 470 480 490 500 510 520 530 540 550 mKIAA1 SPGP----------GPVPSRPPTAEPPPCLRRGAAAADLLSSSPESQHGGTQPPGGGQPL ::: . : : .:: .. .: :.::: . :: ::: mKIAA1 PPGPRRDEVTEEYVDLAKVRGPWRRPPKKRHEDLVAP---SASPEPS-----PP---QPL 510 520 530 540 550 560 570 580 590 600 610 mKIAA1 LQPTKVDAAEGRRPQALRLIEQDPYEHPERLQQLQQELEAFRGQLGDAGALDAIWRELQE ..: mKIAA1 FRPRSEFEEMTILYDIWNGGIDEEDIRFLCVTYERLLQQDNGMDWLNDTLWVYHPSTSLS 560 570 580 590 600 610 >>mKIAA1172 ( 1200 res) mfj66157 (1200 aa) initn: 232 init1: 133 opt: 386 Z-score: 155.4 bits: 40.2 E(): 0.0016 Smith-Waterman score: 428; 32.198% identity (36.491% ungapped) in 323 aa overlap (81-391:749-1045) 60 70 80 90 100 mKIAA1 LHCRLSPGQPDLWRLALLPCLSLRELKKKAPPPRP-TAPKPLLSRREEGEAVEAGDTPEE : : : :.: : . .. : : .. : mKIAA1 EVAQNGGAETSHTEPVSPIPKPVPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPA 720 730 740 750 760 770 110 120 130 140 150 160 mKIAA1 LRSLPPDMMVGPRLPDPFLGTTAPLHFSPGPFPSSTGPATHYLSGPLPPGTYSGPTQLMQ . :: .: .: : .: .: : :: : : :::: : . mKIAA1 FT--PP---LG--MPPPGFGPGVPPPPPPPPFLRPGFNPMHLPPGFLPPG----PPPPIT 780 790 800 810 820 170 180 190 200 210 220 mKIAA1 PRAAVPMAPATVLYPAPAYTSELGLVPRSSPQHGIVSSPYAGVGPPQPVVGLPSAPPPQL : ...: : : : .: : :.. . : .. :...::: ..::. :: mKIAA1 PPVSIP-PPHTPPISIPNLVS--G--ARGNAESGDSAKMYGSAGPPAAPTSLPT--PPVT 830 840 850 860 870 880 230 240 250 260 270 280 mKIAA1 SGPELAMTVRPATTTVDSVQAPISSHTAPRPNPTPALPQPCFPVP--QPVPQSVPQPQPL . : : : : ..::: .. . ::. : : .: : : :. :.:.: mKIAA1 QPVSLLGTQGVAPGPVIGLQAPSTGLLGARPGLIPLQRPPGMPPPHLQRFPMMPPRPMP- 890 900 910 920 930 290 300 310 320 330 340 mKIAA1 PVPYTYSIGTKQPLPAPYTYSIGTKQHLTGPLPQH-QF--PPGIPTGFPVPRTGPQAQA- :. . : : :.: ... . . ::.: : : : :.: :. : :: :. mKIAA1 --PHMMHRG---PPPGPGGFAMPPPHGMKGPFPPHGPFVRPGGMP-GLGGPGPGPGASED 940 950 960 970 980 990 350 360 370 380 390 mKIAA1 ----QPQPQPQPQPQPQPQPQPQPQPQSQSQPQPQPQP-QPQRPAFGPQPTQQPLPFQHP : ::: :: :: : : : ::: :..:. :: : : : : : . :: mKIAA1 RDGRQQQPQQQPPPQQQQQQQ-QPQQPPQQSPSQQPAPAQQQPPQFRNDSRQQFNSGRDQ 1000 1010 1020 1030 1040 1050 400 410 420 430 440 450 mKIAA1 HLFPSQAPGILPPPPPTPYHFTPQPGVLGQPPPTLHTQLYPGPSQDPLPPHSGALPFPSP mKIAA1 ERFGRRSFGSRVENDRERYGSRNDDRDNSNRERREWGRRSPDRDRHRDLEERSRRSSGHR 1060 1070 1080 1090 1100 1110 >>mKIAA0522 ( 646 res) mbp09103 (646 aa) initn: 339 init1: 132 opt: 348 Z-score: 145.7 bits: 37.5 E(): 0.0057 Smith-Waterman score: 379; 29.032% identity (33.221% ungapped) in 341 aa overlap (239-557:311-630) 210 220 230 240 250 260 mKIAA1 YAGVGPPQPVVGLPSAPPPQLSGPELAMTVRPATTTVDSVQAPISSHTAPRPNPTPALPQ : ..: :... : . . : : .: mKIAA0 SSLEDTYGAGDGLKRGALSSSLRDLSDAGKRGRRNSVGSLDSTIEGSVISSPRPHQRMPP 290 300 310 320 330 340 270 280 290 300 310 mKIAA1 PCFPVPQPVPQSVPQPQPLPVPYTY---SIGTKQ---P--LPAPYT--YSIGTKQHLTGP : : : : :. . .:. .. .:.:. : .: : : : .... . mKIAA0 P--PPPPP-PEEYKSQRPVSNSSSFLGSLFGSKRGKGPFQMPPPPTGQASASSSSASSTH 350 360 370 380 390 320 330 340 350 360 370 mKIAA1 LPQHQFPPGIPTG----FPVPRTGPQA-QAQPQPQPQPQPQPQPQPQPQPQPQSQSQPQP .:. : : .: .. :: .:: : : : : :: : : : mKIAA0 HHHHHHHHGHSHGGLGVLPDGQSKLQALHAQYCQGPGPAPPPYLPPQQPPLPP----PPQ 400 410 420 430 440 450 380 390 400 410 420 430 mKIAA1 QPQPQPQRPAFGPQPTQQPLPFQHPHLFPSQAPGILPPPPPTPYHFT-PQPGVLGQPPPT :: : :: .. : :.. : : :. .: : : : : :.: .:: . mKIAA0 QPPPLPQLGSIPPPPASAPPVGPHRHF---HAHG----PVPGPQHYTLGRPGRAPRRGAG 460 470 480 490 500 440 450 460 470 480 490 mKIAA1 LHTQLYPGPSQDPLPPHSGALPFPSPGPPHPHPTLAYGPAPSPRPLGPQATPVSIRGPPP : :. : .. :: .. ::. ::.: :: :. :: :: :.. . : mKIAA0 GHPQFAPH-GRHPLHQPTSPLPLYSPAPQHP-PAHKQGPKHFIFSHHPQMMPAAGAAGGP 510 520 530 540 550 560 500 510 520 530 540 mKIAA1 ASQPTPS----PHLVPSP-AP-SPGPGPVPSRPPTAEPPPCLRRGAAAADLLSSSPESQH .:.: . :: :: .: :: : : :: :: : : . . : .::.. mKIAA0 GSRPPGGSYSHPHHPQSPLSPHSPIP-PHPSYPPLPPPSP----HTPHSPLPPTSPHGPL 570 580 590 600 610 550 560 570 580 590 600 mKIAA1 GGTQPPGGGQPLLQPTKVDAAEGRRPQALRLIEQDPYEHPERLQQLQQELEAFRGQLGDA .. ::: ..: mKIAA0 HASGPPGTANPPSANPKAKPSRISTVV 620 630 640 801 residues in 1 query sequences 1768216 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:46:00 2006 done: Mon Mar 27 10:46:01 2006 Scan time: 0.970 Display time: 0.200 Function used was FASTA [version 3.4t11 Apr 17, 2002]