# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mtj01476.fasta.nr -Q ../query/mKIAA1155.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1155, 162 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921244 sequences Expectation_n fit: rho(ln(x))= 5.1474+/-0.000182; mu= 7.2710+/- 0.010 mean_var=68.3543+/-13.123, 0's: 37 Z-trim: 42 B-trim: 0 in 0/64 Lambda= 0.155128 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|109472269|ref|XP_232121.3| PREDICTED: similar t ( 190) 1099 254.0 8.2e-66 gi|81879547|sp|Q91W45.2|PAI2B_MOUSE RecName: Full= ( 136) 922 214.3 5.3e-54 gi|149036552|gb|EDL91170.1| similar to hypothetica ( 136) 921 214.1 6.2e-54 gi|26337695|dbj|BAC32533.1| unnamed protein produc ( 136) 917 213.2 1.2e-53 gi|148666694|gb|EDK99110.1| cDNA sequence BC017133 ( 123) 848 197.7 4.7e-49 gi|73981014|ref|XP_533009.2| PREDICTED: similar to ( 510) 786 184.3 2.2e-44 gi|109103355|ref|XP_001100423.1| PREDICTED: simila ( 162) 778 182.1 3.1e-44 gi|119620180|gb|EAW99774.1| hCG1988939, isoform CR ( 144) 770 180.3 9.7e-44 gi|166977703|sp|Q9ULR5.2|PAI2B_HUMAN RecName: Full ( 123) 763 178.7 2.5e-43 gi|46362426|gb|AAH68990.1| Poly(A) binding protein ( 124) 684 161.0 5.3e-38 gi|54038392|gb|AAH84669.1| LOC495247 protein [Xeno ( 124) 670 157.9 4.7e-37 gi|27370897|gb|AAH41274.1| Paip2-prov protein [Xen ( 125) 668 157.4 6.4e-37 gi|80477808|gb|AAI08797.1| Unknown (protein for MG ( 124) 666 157.0 8.7e-37 gi|220678513|emb|CAX13383.1| novel protein similar ( 131) 560 133.3 1.3e-29 gi|220678514|emb|CAX13384.1| novel protein similar ( 131) 560 133.3 1.3e-29 gi|37589832|gb|AAH59597.1| Zgc:73265 [Danio rerio] ( 131) 550 131.1 5.9e-29 gi|223646354|gb|ACN09935.1| Polyadenylate-binding ( 137) 548 130.6 8.4e-29 gi|63146090|gb|AAY33979.1| unknown [Oxyuranus scut ( 124) 539 128.6 3.1e-28 gi|126290379|ref|XP_001368379.1| PREDICTED: simila ( 124) 538 128.4 3.7e-28 gi|82081781|sp|Q5ZJS6.1|PAIP2_CHICK RecName: Full= ( 127) 538 128.4 3.7e-28 gi|75041082|sp|Q5R596.1|PAIP2_PONAB RecName: Full= ( 124) 536 127.9 5e-28 gi|148664717|gb|EDK97133.1| polyadenylate-binding ( 131) 535 127.7 6.1e-28 gi|116248561|sp|Q3ZC67.1|PAIP2_BOVIN RecName: Full ( 124) 533 127.2 8e-28 gi|57042649|ref|XP_535206.1| PREDICTED: similar to ( 124) 533 127.2 8e-28 gi|46397013|sp|Q9BPZ3.1|PAIP2_HUMAN RecName: Full= ( 127) 533 127.2 8.1e-28 gi|46397019|sp|Q9D6V8.1|PAIP2_MOUSE RecName: Full= ( 124) 531 126.8 1.1e-27 gi|74195604|dbj|BAE39611.1| unnamed protein produc ( 124) 531 126.8 1.1e-27 gi|74181777|dbj|BAE32597.1| unnamed protein produc ( 124) 529 126.3 1.5e-27 gi|119582514|gb|EAW62110.1| poly(A) binding protei ( 127) 529 126.3 1.5e-27 gi|71297171|gb|AAH39337.1| PAIP2 protein [Homo sap ( 127) 529 126.3 1.5e-27 gi|12052806|emb|CAB66575.1| hypothetical protein [ ( 127) 527 125.9 2.1e-27 gi|7106826|gb|AAF36138.1|AF151052_1 HSPC218 [Homo ( 127) 526 125.7 2.4e-27 gi|209154732|gb|ACI33598.1| Polyadenylate-binding ( 136) 526 125.7 2.5e-27 gi|12838033|dbj|BAB24053.1| unnamed protein produc ( 124) 520 124.3 6e-27 gi|37590904|gb|AAH59655.1| Zgc:73337 protein [Dani ( 117) 498 119.4 1.7e-25 gi|27679758|ref|XP_215046.1| PREDICTED: similar to ( 124) 496 119.0 2.5e-25 gi|209737184|gb|ACI69461.1| Polyadenylate-binding ( 123) 466 112.2 2.6e-23 gi|209736876|gb|ACI69307.1| Polyadenylate-binding ( 123) 463 111.6 4.1e-23 gi|209730384|gb|ACI66061.1| Polyadenylate-binding ( 123) 447 108.0 4.9e-22 gi|114602066|ref|XP_001172410.1| PREDICTED: poly(A ( 114) 435 105.3 3e-21 gi|149558133|ref|XP_001521106.1| PREDICTED: hypoth ( 158) 434 105.1 4.5e-21 gi|149579622|ref|XP_001520285.1| PREDICTED: simila ( 196) 435 105.4 4.6e-21 gi|109078859|ref|XP_001082025.1| PREDICTED: poly(A ( 116) 432 104.6 4.8e-21 gi|149017215|gb|EDL76266.1| rCG49211, isoform CRA_ ( 143) 431 104.4 6.6e-21 gi|47210898|emb|CAF90408.1| unnamed protein produc ( 173) 390 95.3 4.5e-18 gi|47202174|emb|CAF87427.1| unnamed protein produc ( 122) 382 93.4 1.2e-17 gi|148666695|gb|EDK99111.1| cDNA sequence BC017133 ( 69) 325 80.5 5.1e-14 gi|210082080|gb|EEA30845.1| hypothetical protein B ( 154) 223 57.9 7.3e-07 gi|66525424|ref|XP_625228.1| PREDICTED: similar to ( 150) 222 57.7 8.3e-07 gi|167872582|gb|EDS35965.1| polyA-binding protein ( 149) 220 57.2 1.1e-06 >>gi|109472269|ref|XP_232121.3| PREDICTED: similar to Po (190 aa) initn: 1099 init1: 1099 opt: 1099 Z-score: 1337.8 bits: 254.0 E(): 8.2e-66 Smith-Waterman score: 1099; 98.148% identity (100.000% similar) in 162 aa overlap (1-162:29-190) 10 20 30 mKIAA1 ALCCGADLGAALSARPGTWKGEGERQMTTLNT :::::.:::::::::::::.:::::::::::: gi|109 MTGGGARRACEAKVPRAFVRRGSRSQEAALCCGTDLGAALSARPGTWEGEGERQMTTLNT 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA1 GSARISIMNGSSVASTSPSVKCKEDQGLNGHEEKENPFAEYMWMENEEDFNRQVEEELQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GSARISIMNGSSVASTSPSVKCKEDQGLNGHEEKENPFAEYMWMENEEDFNRQVEEELQE 70 80 90 100 110 120 100 110 120 130 140 150 mKIAA1 QDFLDRCFQEMLDEEDQDWFIPARDLPQAVGHLQQQLNGLSVGDSHESEDILSKSNLNPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QDFLDRCFQEMLDEEDQDWFIPARDLPQAVGHLQQQLNGLSVGDSHESEDILSKSNLNPD 130 140 150 160 170 180 160 mKIAA1 AKEFVPGVKY ::::.::::: gi|109 AKEFIPGVKY 190 >>gi|81879547|sp|Q91W45.2|PAI2B_MOUSE RecName: Full=Poly (136 aa) initn: 922 init1: 922 opt: 922 Z-score: 1125.8 bits: 214.3 E(): 5.3e-54 Smith-Waterman score: 922; 100.000% identity (100.000% similar) in 136 aa overlap (27-162:1-136) 10 20 30 40 50 60 mKIAA1 ALCCGADLGAALSARPGTWKGEGERQMTTLNTGSARISIMNGSSVASTSPSVKCKEDQGL :::::::::::::::::::::::::::::::::: gi|818 MTTLNTGSARISIMNGSSVASTSPSVKCKEDQGL 10 20 30 70 80 90 100 110 120 mKIAA1 NGHEEKENPFAEYMWMENEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPARDLPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 NGHEEKENPFAEYMWMENEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPARDLPQ 40 50 60 70 80 90 130 140 150 160 mKIAA1 AVGHLQQQLNGLSVGDSHESEDILSKSNLNPDAKEFVPGVKY :::::::::::::::::::::::::::::::::::::::::: gi|818 AVGHLQQQLNGLSVGDSHESEDILSKSNLNPDAKEFVPGVKY 100 110 120 130 >>gi|149036552|gb|EDL91170.1| similar to hypothetical pr (136 aa) initn: 921 init1: 921 opt: 921 Z-score: 1124.6 bits: 214.1 E(): 6.2e-54 Smith-Waterman score: 921; 99.265% identity (100.000% similar) in 136 aa overlap (27-162:1-136) 10 20 30 40 50 60 mKIAA1 ALCCGADLGAALSARPGTWKGEGERQMTTLNTGSARISIMNGSSVASTSPSVKCKEDQGL :::::::::::::::::::::::::::::::::: gi|149 MTTLNTGSARISIMNGSSVASTSPSVKCKEDQGL 10 20 30 70 80 90 100 110 120 mKIAA1 NGHEEKENPFAEYMWMENEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPARDLPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 NGHEEKENPFAEYMWMENEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPARDLPQ 40 50 60 70 80 90 130 140 150 160 mKIAA1 AVGHLQQQLNGLSVGDSHESEDILSKSNLNPDAKEFVPGVKY ::::::::::::::::::::::::::::::::::::.::::: gi|149 AVGHLQQQLNGLSVGDSHESEDILSKSNLNPDAKEFIPGVKY 100 110 120 130 >>gi|26337695|dbj|BAC32533.1| unnamed protein product [M (136 aa) initn: 917 init1: 917 opt: 917 Z-score: 1119.8 bits: 213.2 E(): 1.2e-53 Smith-Waterman score: 917; 99.265% identity (100.000% similar) in 136 aa overlap (27-162:1-136) 10 20 30 40 50 60 mKIAA1 ALCCGADLGAALSARPGTWKGEGERQMTTLNTGSARISIMNGSSVASTSPSVKCKEDQGL ::::::::::::::::::::.::::::::::::: gi|263 MTTLNTGSARISIMNGSSVAGTSPSVKCKEDQGL 10 20 30 70 80 90 100 110 120 mKIAA1 NGHEEKENPFAEYMWMENEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPARDLPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 NGHEEKENPFAEYMWMENEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPARDLPQ 40 50 60 70 80 90 130 140 150 160 mKIAA1 AVGHLQQQLNGLSVGDSHESEDILSKSNLNPDAKEFVPGVKY :::::::::::::::::::::::::::::::::::::::::: gi|263 AVGHLQQQLNGLSVGDSHESEDILSKSNLNPDAKEFVPGVKY 100 110 120 130 >>gi|148666694|gb|EDK99110.1| cDNA sequence BC017133, is (123 aa) initn: 848 init1: 848 opt: 848 Z-score: 1036.9 bits: 197.7 E(): 4.7e-49 Smith-Waterman score: 848; 100.000% identity (100.000% similar) in 123 aa overlap (40-162:1-123) 10 20 30 40 50 60 mKIAA1 AALSARPGTWKGEGERQMTTLNTGSARISIMNGSSVASTSPSVKCKEDQGLNGHEEKENP :::::::::::::::::::::::::::::: gi|148 MNGSSVASTSPSVKCKEDQGLNGHEEKENP 10 20 30 70 80 90 100 110 120 mKIAA1 FAEYMWMENEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPARDLPQAVGHLQQQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 FAEYMWMENEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPARDLPQAVGHLQQQL 40 50 60 70 80 90 130 140 150 160 mKIAA1 NGLSVGDSHESEDILSKSNLNPDAKEFVPGVKY ::::::::::::::::::::::::::::::::: gi|148 NGLSVGDSHESEDILSKSNLNPDAKEFVPGVKY 100 110 120 >>gi|73981014|ref|XP_533009.2| PREDICTED: similar to Pol (510 aa) initn: 786 init1: 786 opt: 786 Z-score: 953.1 bits: 184.3 E(): 2.2e-44 Smith-Waterman score: 786; 90.323% identity (99.194% similar) in 124 aa overlap (39-162:387-510) 10 20 30 40 50 60 mKIAA1 GAALSARPGTWKGEGERQMTTLNTGSARISIMNGSSVASTSPSVKCKEDQGLNGHEEKEN ::::::::.:::.:: :::::::::.:::: gi|739 TATSAATAEALGGGAEYDLEEGLLISPGSIIMNGSSVANTSPNVKSKEDQGLNGHDEKEN 360 370 380 390 400 410 70 80 90 100 110 120 mKIAA1 PFAEYMWMENEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPARDLPQAVGHLQQQ ::::::::::::::::::::::::::::::::::::::::::::::.::::::.:.:::: gi|739 PFAEYMWMENEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPSRDLPQAMGQLQQQ 420 430 440 450 460 470 130 140 150 160 mKIAA1 LNGLSVGDSHESEDILSKSNLNPDAKEFVPGVKY ::::::.:.:.:.:::::::::::::::.::::: gi|739 LNGLSVNDGHNSDDILSKSNLNPDAKEFIPGVKY 480 490 500 510 >>gi|109103355|ref|XP_001100423.1| PREDICTED: similar to (162 aa) initn: 768 init1: 768 opt: 778 Z-score: 950.5 bits: 182.1 E(): 3.1e-44 Smith-Waterman score: 778; 73.585% identity (85.535% similar) in 159 aa overlap (4-162:4-162) 10 20 30 40 50 60 mKIAA1 ALCCGADLGAALSARPGTWKGEGERQMTTLNTGSARISIMNGSSVASTSPSVKCKEDQGL : : : . .: :. : .: .. : :::::..:.:::::: :::::: gi|109 MGRCPATNGLGSGAGRGALGGVAEYDLKEGLLVSPGSIIMNGSNMANTSPSVKSKEDQGL 10 20 30 40 50 60 70 80 90 100 110 120 mKIAA1 NGHEEKENPFAEYMWMENEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPARDLPQ .::.::::::::::::::::::::::::::::::::::::::::::::::::::.::::: gi|109 SGHDEKENPFAEYMWMENEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPSRDLPQ 70 80 90 100 110 120 130 140 150 160 mKIAA1 AVGHLQQQLNGLSVGDSHESEDILSKSNLNPDAKEFVPGVKY :.:.::::::::::...:.:::::::::::::::::.:: :: gi|109 AMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFIPGEKY 130 140 150 160 >>gi|119620180|gb|EAW99774.1| hCG1988939, isoform CRA_a (144 aa) initn: 768 init1: 768 opt: 770 Z-score: 941.6 bits: 180.3 E(): 9.7e-44 Smith-Waterman score: 770; 85.271% identity (96.899% similar) in 129 aa overlap (34-162:16-144) 10 20 30 40 50 60 mKIAA1 CGADLGAALSARPGTWKGEGERQMTTLNTGSARISIMNGSSVASTSPSVKCKEDQGLNGH ..: :::::..:.:::::: ::::::.:: gi|119 MPHLPGRRSPLLLCLAVRSIIMNGSNMANTSPSVKSKEDQGLSGH 10 20 30 40 70 80 90 100 110 120 mKIAA1 EEKENPFAEYMWMENEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPARDLPQAVG .::::::::::::::::::::::::::::::::::::::::::::::::::.::::::.: gi|119 DEKENPFAEYMWMENEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPSRDLPQAMG 50 60 70 80 90 100 130 140 150 160 mKIAA1 HLQQQLNGLSVGDSHESEDILSKSNLNPDAKEFVPGVKY .::::::::::...:.:::::::::::::::::.:: :: gi|119 QLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFIPGEKY 110 120 130 140 >>gi|166977703|sp|Q9ULR5.2|PAI2B_HUMAN RecName: Full=Pol (123 aa) initn: 763 init1: 763 opt: 763 Z-score: 934.1 bits: 178.7 E(): 2.5e-43 Smith-Waterman score: 763; 87.805% identity (98.374% similar) in 123 aa overlap (40-162:1-123) 10 20 30 40 50 60 mKIAA1 AALSARPGTWKGEGERQMTTLNTGSARISIMNGSSVASTSPSVKCKEDQGLNGHEEKENP ::::..:.:::::: ::::::.::.::::: gi|166 MNGSNMANTSPSVKSKEDQGLSGHDEKENP 10 20 30 70 80 90 100 110 120 mKIAA1 FAEYMWMENEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPARDLPQAVGHLQQQL :::::::::::::::::::::::::::::::::::::::::::::.::::::.:.::::: gi|166 FAEYMWMENEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPSRDLPQAMGQLQQQL 40 50 60 70 80 90 130 140 150 160 mKIAA1 NGLSVGDSHESEDILSKSNLNPDAKEFVPGVKY :::::...:.:::::::::::::::::.:: :: gi|166 NGLSVSEGHDSEDILSKSNLNPDAKEFIPGEKY 100 110 120 >>gi|46362426|gb|AAH68990.1| Poly(A) binding protein int (124 aa) initn: 610 init1: 610 opt: 684 Z-score: 838.5 bits: 161.0 E(): 5.3e-38 Smith-Waterman score: 684; 77.419% identity (95.968% similar) in 124 aa overlap (40-162:1-124) 10 20 30 40 50 60 mKIAA1 AALSARPGTWKGEGERQMTTLNTGSARISIMNGSSVASTSPSVKCKEDQGLNGHEEKEN- ::::...... ..: ..:: .:::.:.:: gi|463 MNGSNIGNNTSNAKSNDDQVVNGHDENENN 10 20 30 70 80 90 100 110 120 mKIAA1 PFAEYMWMENEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPARDLPQAVGHLQQQ ::::::::::::::::::::::::::::::::::::::::.:::::.:::::.::.:::: gi|463 PFAEYMWMENEEDFNRQVEEELQEQDFLDRCFQEMLDEEDKDWFIPSRDLPQGVGQLQQQ 40 50 60 70 80 90 130 140 150 160 mKIAA1 LNGLSVGDSHESEDILSKSNLNPDAKEFVPGVKY ::::.:...: .:::::::.:::::::::::::: gi|463 LNGLTVNENHSTEDILSKSSLNPDAKEFVPGVKY 100 110 120 162 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Thu Mar 12 23:42:18 2009 done: Thu Mar 12 23:46:30 2009 Total Scan time: 609.630 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]