FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4171.ptfa, 668 aa
 vs ./tmplib.26680 library

1768349 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.9775+/-0.00399; mu= 20.2062+/- 0.268
 mean_var=72.8847+/-16.607, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1502

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0994  ( 389 res)   mbh02401                   ( 389) 1760  391 1.3e-109


>>mKIAA0994  ( 389 res)   mbh02401                        (389 aa)
 initn: 1501 init1: 1501 opt: 1760  Z-score: 2060.1  bits: 390.8 E(): 1.3e-109
Smith-Waterman score: 1760;  62.468% identity (62.791% ungapped) in 389 aa overlap (281-668:2-389)

              260       270       280       290       300       310
mKIAA4 ERFFVEGLSFPDAGFPGLISFHVTLLDDSNEDFSETPIFTDTAVFRVAPWIMTPSTLPPL
                                     : .  :::::::..::.:::::::. :::.
mKIAA0                              AEGIPLTPIFTDTVMFRIAPWIMTPNILPPV
                                            10        20        30 

              320       330       340       350       360       370
mKIAA4 EVYVCRVRNNTCFVEAVEELARKAGCKLTICPQAENRNDRWIQDEMELGYVQAPHKTLPV
        :.:: ...:  :.. :..:..:..:.: .: :  ::.:::::::.:.::..:::: .::
mKIAA0 SVFVCCMKDNYLFLKEVKNLVEKTNCELKVCFQYMNRGDRWIQDEIEFGYIEAPHKGFPV
              40        50        60        70        80        90 

              380       390       400       410       420       430
mKIAA4 VFDSPRNGELQGFPYKRILGLDFGYVTREPKDSSVSGLDSFGNLEVSPPVVANGKEYPLG
       :.::::.:.:. :: :..:: :::::::::   .:..:::::::::::::..::::::::
mKIAA0 VLDSPRDGNLKDFPIKQLLGPDFGYVTREPLFETVTSLDSFGNLEVSPPVTVNGKEYPLG
             100       110       120       130       140       150 

              440       450       460       470       480       490
mKIAA4 RILIGGNLPGSRGRRVTQVVRNFLHAQKVQPLVELFVDWLAVGHVDEFLSFVPAPDGKGF
       :::::...: : :::.:.:::.::.::.::  :::. :::.:::::::..:.: :  : :
mKIAA0 RILIGSSFPLSGGRRMTKVVRDFLQAQQVQAPVELYSDWLTVGHVDEFMTFIPIPGKKEF
             160       170       180       190       200       210 

              500       510       520       530       540       550
mKIAA4 RLLLASPGACFRLFQEKQKWGHGRSLLFEGVIGDRRVQTVSINQILNNQSLINFNKFAQS
       :::.:: .::..::.:::: :::....:.: .:    . ..::.::.:.:: . :.. : 
mKIAA0 RLLMASTSACYQLFREKQKAGHGEAVMFKG-LGGMSSKRITINKILSNESLTQENQYFQR
             220       230       240        250       260       270

              560       570        580       590       600         
mKIAA4 CIDWNREVLKRELGLAEGDIIDIPQLFKT-EKRKAVAFFPDLVNMLVLGKHLGIPKPFGP
       :.::::..:::::.:.: ::::.: :::  :...: ::::..:::.:: : :::::::::
mKIAA0 CLDWNRDILKRELALTEKDIIDLPALFKMDENHQARAFFPNMVNMIVLDKDLGIPKPFGP
              280       290       300       310       320       330

     610       620       630       640       650       660        
mKIAA4 IINGRCCLEEKVRSLLEPLGLHCTFIDDFTPYHMLHGEVHCGTNVRREPFAFKWWHMVP
        .. .:::: .::.::::::: ::::::.. :: . :::::::::::.:::::::::::
mKIAA0 QVEEECCLETHVRGLLEPLGLACTFIDDISAYHKFLGEVHCGTNVRRKPFAFKWWHMVP
              340       350       360       370       380         




668 residues in 1 query   sequences
1768349 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:04:02 2006 done: Mon Mar 27 11:04:03 2006
 Scan time:  0.830 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]