FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0188.ptfa, 684 aa vs ./tmplib.26680 library 1768333 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.3801+/-0.00591; mu= 3.1268+/- 0.390 mean_var=152.9333+/-37.000, 0's: 0 Z-trim: 2 B-trim: 153 in 1/35 Lambda= 0.1037 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4023 ( 888 res) msh07169 ( 888) 1771 277 5.2e-75 mKIAA0249 ( 115 res) mph01493 ( 115) 512 88 5.5e-19 >>mKIAA4023 ( 888 res) msh07169 (888 aa) initn: 1919 init1: 1196 opt: 1771 Z-score: 1439.0 bits: 277.1 E(): 5.2e-75 Smith-Waterman score: 1905; 46.444% identity (49.922% ungapped) in 689 aa overlap (9-672:215-880) 10 20 30 mKIAA0 SSLVDCQRTP--PHLAEGVLSSSCPLQSCHFHASE-SP :: : :. :: : . . .: .: mKIAA4 PRRREEDAVDSSSEELEAGAESELTLLEKPTPESPSAQEAEEPSSQPKDIHPYSDGECTP 190 200 210 220 230 240 40 50 60 70 80 mKIAA0 SGSRPS----TPKSDSELVSKSADRLTPKNNLEMLWLWGELPQAAKSSSPH------KMK ... : .::::::: .: . . . .: :.::.::..::. :. .: mKIAA4 QANLSSGDLMSPKSDSELELRSLEPSPLRAESHMQWVWGRLPKVAKAERPEFSLILESMA 250 260 270 280 290 300 90 100 110 120 130 mKIAA0 ES--------SPLGSRKTP--DKMNFQAIH-SESSDTFSDQSPTMARGLLIHQSKAQTEM :. :: .: . : .. ..: . .::: . . . . : : mKIAA4 EAICALPEEPSPSSSPSEAGVDTLSPPVLHPGVRADTFHPAVEAHCEETAVDSPLAAPES 310 320 330 340 350 360 140 150 160 170 180 190 mKIAA0 QFVNEEDLESLGAAAPPSPVAEELKAPYPNTAQSSSKTDSPSRKKDKRSRHLGADGVYLD . .. .. : ::. ::. . .: .: .. .. : .. . ::..::: . .::: mKIAA4 KETKTQN--SRGAGHPPATKSWSWTTPESHTPSGHPQV-SRGKGSLKRNQHLGPSDIYLD 370 380 390 400 410 420 200 210 220 230 240 250 mKIAA0 DLTDMDPEVAALYFPKNGDPGGLPKQASDNGARSANQSPQSVGGSGIDSGVESTSDSLRD :: ..: : .::::::. . : .. :. . .. .::. . .: : ::. mKIAA4 DLPSLDSENVALYFPKS-EYGMGARRWSEPSNQKLLESPNP------EHIAECTLDSV-- 430 440 450 460 470 260 270 280 290 300 310 mKIAA0 LPSIAISLCGGLSDHREITKDAFLEQAVSYQQFADNPAIIDDPNLVVKVGNKYYNWTTAA .: .::::::.:.:.:. . : .. :::.... ::...::::::::...:.:::..:: mKIAA4 -DKIELSLCGGLADNRDISLEKFTQHMVSYEDLTKNPGLLDDPNLVVKINEKHYNWAVAA 480 490 500 510 520 530 320 330 340 350 360 370 mKIAA0 PLLLAMQAFQKPLPKATVESIMRDKMPKKGGRWWFSWRGRNATIKEES-KPEQCLTGKGH :..:..::::: ::..::... ..:::.:::::::::: :. .:.: . :. : : . mKIAA4 PMILSLQAFQKNLPESTVDKLEKEKMPRKGGRWWFSWRRRDFPAEEHSSQREKAATRKQQ 540 550 560 570 580 590 380 390 400 410 420 430 mKIAA0 NTGEQPAQLGLATRIKHESSSSDEEHAAAKPSGSSHLSLLSNVSYKKTLRLTSEQLKSLK ::. :. . .: : . : :: . . .:::.:::.:.:.. :. mKIAA4 --GEKTEVLSSDDDVP-DSPVILE----VPPLPSSTPGYVP--TYKKSLRLSSDQIRCLN 600 610 620 630 640 440 450 460 470 480 490 mKIAA0 LKNGPNDVVFSVTTQYQGTCRCEGTIYLWNWDDKVIISDIDGTITRSDTLGHILPTLGKD :..: :::::::::::::::::..:::::::::::.:::::::::.::.:::::: :::: mKIAA4 LNEGANDVVFSVTTQYQGTCRCKATIYLWNWDDKVVISDIDGTITKSDALGHILPQLGKD 650 660 670 680 690 700 500 510 520 530 540 550 mKIAA0 WTHQGIAKLYHKVSQNGYKFLYCSARAIGMADMTRGYLHWVNERGTVLPQGPLLLSPSSL ::::::..::::. :::::::::::::::::.:.:::.::.:.: ::.::.::::::: mKIAA4 WTHQGITSLYHKIHLNGYKFLYCSARAIGMADLTKGYLQWVSEHGCGLPKGPILLSPSSL 710 720 730 740 750 760 560 570 580 590 600 610 mKIAA0 FSALHREVIEKKPEKFKVQCLTDIKNLFFPNTEPFYAAFGNRPADVYSYKQVGLSLNRIF :::::::::::::: ::: ::.::..::.:. .::.::::::: ::..:.:::: .::: mKIAA4 FSALHREVIEKKPEVFKVACLSDIQQLFLPQRQPFHAAFGNRPNDVFAYRQVGLPESRIF 770 780 790 800 810 820 620 630 640 650 660 670 mKIAA0 TVNPKGELVQEHAKTNISSYVRLCEVVDHVFPLLKRSHSCDFPCSDTFSNFTFWREPLPP ::::.:::.:: :.. :.: :: :::. .:: . :. : :. : .::...::.::: mKIAA4 TVNPRGELIQELIKSHKSTYQRLGEVVELLFPPVVRGPSTDLA-SPEYSNLSYWRKPLPY 830 840 850 860 870 880 680 mKIAA0 FENQDMHSASA mKIAA4 VDFEALA >>mKIAA0249 ( 115 res) mph01493 (115 aa) initn: 510 init1: 444 opt: 512 Z-score: 433.2 bits: 88.0 E(): 5.5e-19 Smith-Waterman score: 512; 61.739% identity (62.281% ungapped) in 115 aa overlap (565-679:1-114) 540 550 560 570 580 590 mKIAA0 NERGTVLPQGPLLLSPSSLFSALHREVIEKKPEKFKVQCLTDIKNLFFPNTEPFYAAFGN ::::::..::.:::::: :. .:::::::: mKIAA0 KPEKFKIECLNDIKNLFAPSRQPFYAAFGN 10 20 30 600 610 620 630 640 650 mKIAA0 RPADVYSYKQVGLSLNRIFTVNPKGELVQEHAKTNISSYVRLCEVVDHVFPLLKRSHSCD :: :::.: :::. :::::::::::.::..: : ::: :: :.:.::::::.. .. mKIAA0 RPNDVYAYTQVGVPDCRIFTVNPKGELIQERTKGNKSSYHRLSELVEHVFPLLSKEQNSA 40 50 60 70 80 90 660 670 680 mKIAA0 FPCSDTFSNFTFWREPLPPFENQDMHSASA ::: . ::.: .::.:.: .. .:. mKIAA0 FPCPE-FSSFCYWRDPIPDLDLDDLA 100 110 684 residues in 1 query sequences 1768333 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:14:08 2006 done: Mon Mar 27 10:14:09 2006 Scan time: 0.830 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]