# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mtj00050.fasta.nr -Q ../query/mKIAA4180.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA4180, 157 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7918247 sequences Expectation_n fit: rho(ln(x))= 5.9688+/-0.000188; mu= 2.3276+/- 0.010 mean_var=105.8680+/-20.250, 0's: 43 Z-trim: 53 B-trim: 3 in 1/68 Lambda= 0.124650 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|13278519|gb|AAH04057.1| Tacc2 protein [Mus musc ( 598) 935 178.2 1.7e-42 gi|148685731|gb|EDL17678.1| transforming, acidic c ( 584) 934 178.0 1.9e-42 gi|148685733|gb|EDL17680.1| transforming, acidic c ( 673) 934 178.1 2.1e-42 gi|74225200|dbj|BAE38287.1| unnamed protein produc ( 947) 935 178.4 2.4e-42 gi|12654353|gb|AAH00999.1|AAH00999 Similar to tran ( 190) 925 176.0 2.5e-42 gi|74217005|dbj|BAE26610.1| unnamed protein produc (1033) 935 178.4 2.5e-42 gi|52486864|ref|NP_067289.2| transforming, acidic (1036) 935 178.4 2.5e-42 gi|114633117|ref|XP_001158374.1| PREDICTED: transf ( 952) 934 178.2 2.7e-42 gi|52486828|ref|NP_001004418.1| transforming acidi (1129) 935 178.4 2.7e-42 gi|52486915|ref|NP_996738.2| transforming, acidic (1146) 935 178.5 2.7e-42 gi|151555699|gb|AAI49059.1| TACC2 protein [Bos tau ( 996) 934 178.2 2.8e-42 gi|194205585|ref|XP_001495574.2| PREDICTED: transf ( 996) 931 177.7 4e-42 gi|52486810|ref|NP_001004415.1| transforming acidi (2834) 935 178.8 5.3e-42 gi|52486843|ref|NP_001004468.1| transforming, acid (2879) 935 178.8 5.4e-42 gi|7542377|gb|AAF63433.1|AF176646_1 anti zuai-1 [H ( 571) 925 176.4 5.6e-42 gi|66347365|emb|CAI95130.1| transforming, acidic c ( 575) 925 176.4 5.7e-42 gi|73998930|ref|XP_535042.2| PREDICTED: similar to (2885) 934 178.6 6.1e-42 gi|19584438|emb|CAD28509.1| hypothetical protein [ ( 807) 925 176.5 7.3e-42 gi|66347364|emb|CAI95129.1| transforming, acidic c ( 832) 925 176.5 7.4e-42 gi|114633121|ref|XP_001158262.1| PREDICTED: transf ( 836) 925 176.5 7.5e-42 gi|114633125|ref|XP_001158426.1| PREDICTED: transf ( 906) 925 176.6 7.9e-42 gi|7934572|gb|AAF29537.2| TACC2 [Homo sapiens] ( 906) 925 176.6 7.9e-42 gi|114633119|ref|XP_001158880.1| PREDICTED: transf ( 949) 925 176.6 8.2e-42 gi|114633113|ref|XP_001158550.1| PREDICTED: transf ( 961) 925 176.6 8.3e-42 gi|114633115|ref|XP_001158797.1| PREDICTED: transf ( 996) 925 176.6 8.5e-42 gi|45827753|ref|NP_996742.1| transforming, acidic ( 996) 925 176.6 8.5e-42 gi|114633103|ref|XP_001158492.1| PREDICTED: transf (1012) 925 176.6 8.6e-42 gi|114633111|ref|XP_001158733.1| PREDICTED: transf (1026) 925 176.6 8.7e-42 gi|11096460|gb|AAC64968.2| TACC2 protein [Homo sap (1026) 925 176.6 8.7e-42 gi|114633109|ref|XP_001158615.1| PREDICTED: transf (1027) 925 176.6 8.7e-42 gi|66347361|emb|CAI95126.1| transforming, acidic c (1038) 925 176.6 8.8e-42 gi|45827755|ref|NP_996743.1| transforming, acidic (1094) 925 176.6 9.1e-42 gi|114633107|ref|XP_001158316.1| PREDICTED: transf (1094) 925 176.6 9.1e-42 gi|119569711|gb|EAW49326.1| hCG41426, isoform CRA_ (1203) 925 176.7 9.8e-42 gi|54673652|gb|AAH39311.1| Transforming, acidic co ( 996) 922 176.1 1.2e-41 gi|148685732|gb|EDL17679.1| transforming, acidic c (1020) 920 175.7 1.6e-41 gi|109090793|ref|XP_001102357.1| PREDICTED: simila ( 906) 919 175.5 1.7e-41 gi|109090791|ref|XP_001102801.1| PREDICTED: simila ( 949) 919 175.5 1.7e-41 gi|66347367|emb|CAI95132.1| transforming, acidic c (2675) 925 177.0 1.8e-41 gi|109090785|ref|XP_001102448.1| PREDICTED: simila ( 985) 919 175.5 1.8e-41 gi|109090789|ref|XP_001102719.1| PREDICTED: simila ( 996) 919 175.5 1.8e-41 gi|109090787|ref|XP_001102625.1| PREDICTED: simila (1026) 919 175.5 1.8e-41 gi|187957040|gb|AAI50628.1| TACC2 protein [Homo sa (2826) 925 177.0 1.9e-41 gi|126273343|ref|XP_001376476.1| PREDICTED: simila (1038) 919 175.5 1.9e-41 gi|219519155|gb|AAI44600.1| Unknown (protein for M (2875) 925 177.0 1.9e-41 gi|114633105|ref|XP_001158836.1| PREDICTED: transf (2931) 925 177.0 1.9e-41 gi|122066295|sp|O95359.3|TACC2_HUMAN RecName: Full (2948) 925 177.0 1.9e-41 gi|109090783|ref|XP_001101898.1| PREDICTED: simila (1094) 919 175.6 1.9e-41 gi|224053107|ref|XP_002191216.1| PREDICTED: transf (1033) 918 175.4 2.1e-41 gi|118093119|ref|XP_421798.2| PREDICTED: similar t (1035) 918 175.4 2.1e-41 >>gi|13278519|gb|AAH04057.1| Tacc2 protein [Mus musculus (598 aa) initn: 935 init1: 935 opt: 935 Z-score: 919.4 bits: 178.2 E(): 1.7e-42 Smith-Waterman score: 935; 96.795% identity (98.718% similar) in 156 aa overlap (2-157:443-598) 10 20 30 mKIAA4 LLSLLPEDEQREKSISHQTVQQLVLEKEQAL .. . ::::::::::::::::::::::::: gi|132 REVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIEDEQREKSISHQTVQQLVLEKEQAL 420 430 440 450 460 470 40 50 60 70 80 90 mKIAA4 ADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKKCAQEYLSRVKKEEQRYQALKVHAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 ADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKKCAQEYLSRVKKEEQRYQALKVHAE 480 490 500 510 520 530 100 110 120 130 140 150 mKIAA4 EKLDRANAEIAQVRGKAQQEQAAYQASLRKEQLRVDALERTLEQKNKEIEELTKICDELI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 EKLDRANAEIAQVRGKAQQEQAAYQASLRKEQLRVDALERTLEQKNKEIEELTKICDELI 540 550 560 570 580 590 mKIAA4 AKMGKS :::::: gi|132 AKMGKS >>gi|148685731|gb|EDL17678.1| transforming, acidic coile (584 aa) initn: 934 init1: 934 opt: 934 Z-score: 918.5 bits: 178.0 E(): 1.9e-42 Smith-Waterman score: 934; 100.000% identity (100.000% similar) in 151 aa overlap (7-157:434-584) 10 20 30 mKIAA4 LLSLLPEDEQREKSISHQTVQQLVLEKEQALADLNS :::::::::::::::::::::::::::::: gi|148 ARAEVIAKEREVSEWRDKYEESRREVVEMREDEQREKSISHQTVQQLVLEKEQALADLNS 410 420 430 440 450 460 40 50 60 70 80 90 mKIAA4 VEKSLADLFRRYEKMKEVLEGFRKNEEVLKKCAQEYLSRVKKEEQRYQALKVHAEEKLDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VEKSLADLFRRYEKMKEVLEGFRKNEEVLKKCAQEYLSRVKKEEQRYQALKVHAEEKLDR 470 480 490 500 510 520 100 110 120 130 140 150 mKIAA4 ANAEIAQVRGKAQQEQAAYQASLRKEQLRVDALERTLEQKNKEIEELTKICDELIAKMGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 ANAEIAQVRGKAQQEQAAYQASLRKEQLRVDALERTLEQKNKEIEELTKICDELIAKMGK 530 540 550 560 570 580 mKIAA4 S : gi|148 S >>gi|148685733|gb|EDL17680.1| transforming, acidic coile (673 aa) initn: 934 init1: 934 opt: 934 Z-score: 917.7 bits: 178.1 E(): 2.1e-42 Smith-Waterman score: 934; 100.000% identity (100.000% similar) in 151 aa overlap (7-157:523-673) 10 20 30 mKIAA4 LLSLLPEDEQREKSISHQTVQQLVLEKEQALADLNS :::::::::::::::::::::::::::::: gi|148 ARAEVIAKEREVSEWRDKYEESRREVVEMREDEQREKSISHQTVQQLVLEKEQALADLNS 500 510 520 530 540 550 40 50 60 70 80 90 mKIAA4 VEKSLADLFRRYEKMKEVLEGFRKNEEVLKKCAQEYLSRVKKEEQRYQALKVHAEEKLDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VEKSLADLFRRYEKMKEVLEGFRKNEEVLKKCAQEYLSRVKKEEQRYQALKVHAEEKLDR 560 570 580 590 600 610 100 110 120 130 140 150 mKIAA4 ANAEIAQVRGKAQQEQAAYQASLRKEQLRVDALERTLEQKNKEIEELTKICDELIAKMGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 ANAEIAQVRGKAQQEQAAYQASLRKEQLRVDALERTLEQKNKEIEELTKICDELIAKMGK 620 630 640 650 660 670 mKIAA4 S : gi|148 S >>gi|74225200|dbj|BAE38287.1| unnamed protein product [M (947 aa) initn: 935 init1: 935 opt: 935 Z-score: 916.7 bits: 178.4 E(): 2.4e-42 Smith-Waterman score: 935; 96.795% identity (98.718% similar) in 156 aa overlap (2-157:792-947) 10 20 30 mKIAA4 LLSLLPEDEQREKSISHQTVQQLVLEKEQAL .. . ::::::::::::::::::::::::: gi|742 REVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIEDEQREKSISHQTVQQLVLEKEQAL 770 780 790 800 810 820 40 50 60 70 80 90 mKIAA4 ADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKKCAQEYLSRVKKEEQRYQALKVHAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 ADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKKCAQEYLSRVKKEEQRYQALKVHAE 830 840 850 860 870 880 100 110 120 130 140 150 mKIAA4 EKLDRANAEIAQVRGKAQQEQAAYQASLRKEQLRVDALERTLEQKNKEIEELTKICDELI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 EKLDRANAEIAQVRGKAQQEQAAYQASLRKEQLRVDALERTLEQKNKEIEELTKICDELI 890 900 910 920 930 940 mKIAA4 AKMGKS :::::: gi|742 AKMGKS >>gi|12654353|gb|AAH00999.1|AAH00999 Similar to transfor (190 aa) initn: 925 init1: 925 opt: 925 Z-score: 916.3 bits: 176.0 E(): 2.5e-42 Smith-Waterman score: 925; 94.872% identity (98.718% similar) in 156 aa overlap (2-157:35-190) 10 20 30 mKIAA4 LLSLLPEDEQREKSISHQTVQQLVLEKEQAL .. . ::::::::.:::::::::::::::: gi|126 REVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIEDEQREKSVSHQTVQQLVLEKEQAL 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA4 ADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKKCAQEYLSRVKKEEQRYQALKVHAE :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|126 ADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKRCAQEYLSRVKKEEQRYQALKVHAE 70 80 90 100 110 120 100 110 120 130 140 150 mKIAA4 EKLDRANAEIAQVRGKAQQEQAAYQASLRKEQLRVDALERTLEQKNKEIEELTKICDELI :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|126 EKLDRANAEIAQVRGKAQQEQAAHQASLRKEQLRVDALERTLEQKNKEIEELTKICDELI 130 140 150 160 170 180 mKIAA4 AKMGKS :::::: gi|126 AKMGKS 190 >>gi|74217005|dbj|BAE26610.1| unnamed protein product [M (1033 aa) initn: 935 init1: 935 opt: 935 Z-score: 916.2 bits: 178.4 E(): 2.5e-42 Smith-Waterman score: 935; 96.795% identity (98.718% similar) in 156 aa overlap (2-157:878-1033) 10 20 30 mKIAA4 LLSLLPEDEQREKSISHQTVQQLVLEKEQAL .. . ::::::::::::::::::::::::: gi|742 REVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIEDEQREKSISHQTVQQLVLEKEQAL 850 860 870 880 890 900 40 50 60 70 80 90 mKIAA4 ADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKKCAQEYLSRVKKEEQRYQALKVHAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 ADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKKCAQEYLSRVKKEEQRYQALKVHAE 910 920 930 940 950 960 100 110 120 130 140 150 mKIAA4 EKLDRANAEIAQVRGKAQQEQAAYQASLRKEQLRVDALERTLEQKNKEIEELTKICDELI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 EKLDRANAEIAQVRGKAQQEQAAYQASLRKEQLRVDALERTLEQKNKEIEELTKICDELI 970 980 990 1000 1010 1020 mKIAA4 AKMGKS :::::: gi|742 AKMGKS 1030 >>gi|52486864|ref|NP_067289.2| transforming, acidic coil (1036 aa) initn: 935 init1: 935 opt: 935 Z-score: 916.2 bits: 178.4 E(): 2.5e-42 Smith-Waterman score: 935; 96.795% identity (98.718% similar) in 156 aa overlap (2-157:881-1036) 10 20 30 mKIAA4 LLSLLPEDEQREKSISHQTVQQLVLEKEQAL .. . ::::::::::::::::::::::::: gi|524 REVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIEDEQREKSISHQTVQQLVLEKEQAL 860 870 880 890 900 910 40 50 60 70 80 90 mKIAA4 ADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKKCAQEYLSRVKKEEQRYQALKVHAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|524 ADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKKCAQEYLSRVKKEEQRYQALKVHAE 920 930 940 950 960 970 100 110 120 130 140 150 mKIAA4 EKLDRANAEIAQVRGKAQQEQAAYQASLRKEQLRVDALERTLEQKNKEIEELTKICDELI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|524 EKLDRANAEIAQVRGKAQQEQAAYQASLRKEQLRVDALERTLEQKNKEIEELTKICDELI 980 990 1000 1010 1020 1030 mKIAA4 AKMGKS :::::: gi|524 AKMGKS >>gi|114633117|ref|XP_001158374.1| PREDICTED: transformi (952 aa) initn: 934 init1: 934 opt: 934 Z-score: 915.7 bits: 178.2 E(): 2.7e-42 Smith-Waterman score: 934; 98.026% identity (100.000% similar) in 152 aa overlap (6-157:801-952) 10 20 30 mKIAA4 LLSLLPEDEQREKSISHQTVQQLVLEKEQALADLN :::::::::.:::::::::::::::::::: gi|114 DKYEESRREVMEMRKIVAEYEKTIAQMIGKPEDEQREKSVSHQTVQQLVLEKEQALADLN 780 790 800 810 820 830 40 50 60 70 80 90 mKIAA4 SVEKSLADLFRRYEKMKEVLEGFRKNEEVLKKCAQEYLSRVKKEEQRYQALKVHAEEKLD :::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::: gi|114 SVEKSLADLFRRYEKMKEVLEGFRKNEEVLKRCAQEYLSRVKKEEQRYQALKVHAEEKLD 840 850 860 870 880 890 100 110 120 130 140 150 mKIAA4 RANAEIAQVRGKAQQEQAAYQASLRKEQLRVDALERTLEQKNKEIEELTKICDELIAKMG :::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::: gi|114 RANAEIAQVRGKAQQEQAAHQASLRKEQLRVDALERTLEQKNKEIEELTKICDELIAKMG 900 910 920 930 940 950 mKIAA4 KS :: gi|114 KS >>gi|52486828|ref|NP_001004418.1| transforming acidic co (1129 aa) initn: 935 init1: 935 opt: 935 Z-score: 915.7 bits: 178.4 E(): 2.7e-42 Smith-Waterman score: 935; 96.795% identity (98.718% similar) in 156 aa overlap (2-157:974-1129) 10 20 30 mKIAA4 LLSLLPEDEQREKSISHQTVQQLVLEKEQAL .. . ::::::::::::::::::::::::: gi|524 REVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIEDEQREKSISHQTVQQLVLEKEQAL 950 960 970 980 990 1000 40 50 60 70 80 90 mKIAA4 ADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKKCAQEYLSRVKKEEQRYQALKVHAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|524 ADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKKCAQEYLSRVKKEEQRYQALKVHAE 1010 1020 1030 1040 1050 1060 100 110 120 130 140 150 mKIAA4 EKLDRANAEIAQVRGKAQQEQAAYQASLRKEQLRVDALERTLEQKNKEIEELTKICDELI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|524 EKLDRANAEIAQVRGKAQQEQAAYQASLRKEQLRVDALERTLEQKNKEIEELTKICDELI 1070 1080 1090 1100 1110 1120 mKIAA4 AKMGKS :::::: gi|524 AKMGKS >>gi|52486915|ref|NP_996738.2| transforming, acidic coil (1146 aa) initn: 935 init1: 935 opt: 935 Z-score: 915.6 bits: 178.5 E(): 2.7e-42 Smith-Waterman score: 935; 96.795% identity (98.718% similar) in 156 aa overlap (2-157:991-1146) 10 20 30 mKIAA4 LLSLLPEDEQREKSISHQTVQQLVLEKEQAL .. . ::::::::::::::::::::::::: gi|524 REVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIEDEQREKSISHQTVQQLVLEKEQAL 970 980 990 1000 1010 1020 40 50 60 70 80 90 mKIAA4 ADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKKCAQEYLSRVKKEEQRYQALKVHAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|524 ADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKKCAQEYLSRVKKEEQRYQALKVHAE 1030 1040 1050 1060 1070 1080 100 110 120 130 140 150 mKIAA4 EKLDRANAEIAQVRGKAQQEQAAYQASLRKEQLRVDALERTLEQKNKEIEELTKICDELI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|524 EKLDRANAEIAQVRGKAQQEQAAYQASLRKEQLRVDALERTLEQKNKEIEELTKICDELI 1090 1100 1110 1120 1130 1140 mKIAA4 AKMGKS :::::: gi|524 AKMGKS 157 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Tue Mar 17 23:17:29 2009 done: Tue Mar 17 23:21:36 2009 Total Scan time: 595.950 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]