# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mth02320.fasta.nr -Q ../query/mKIAA0264.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0264, 154 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921468 sequences Expectation_n fit: rho(ln(x))= 5.3860+/-0.000183; mu= 5.7118+/- 0.010 mean_var=66.5165+/-13.378, 0's: 36 Z-trim: 36 B-trim: 2789 in 1/64 Lambda= 0.157257 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|29165736|gb|AAH49149.1| Mrps27 protein [Mus mus ( 248) 923 217.4 1.1e-54 gi|81874048|sp|Q8BK72.1|RT27_MOUSE RecName: Full=2 ( 415) 923 217.5 1.7e-54 gi|50980303|ref|NP_776118.2| mitochondrial ribosom ( 415) 923 217.5 1.7e-54 gi|148668513|gb|EDL00832.1| mitochondrial ribosoma ( 415) 908 214.1 1.8e-53 gi|149059166|gb|EDM10173.1| mitochondrial ribosoma ( 268) 840 198.6 5.3e-49 gi|149059161|gb|EDM10168.1| mitochondrial ribosoma ( 415) 840 198.7 7.7e-49 gi|73950170|ref|XP_852973.1| PREDICTED: similar to ( 452) 713 169.9 3.9e-40 gi|194220153|ref|XP_001504081.2| PREDICTED: simila ( 415) 696 166.0 5.3e-39 gi|114599749|ref|XP_001154328.1| PREDICTED: mitoch ( 358) 692 165.1 8.7e-39 gi|114599745|ref|XP_001154270.1| PREDICTED: mitoch ( 388) 692 165.1 9.3e-39 gi|168267252|dbj|BAG09682.1| mitochondrial 28S rib ( 414) 692 165.1 9.9e-39 gi|55728852|emb|CAH91164.1| hypothetical protein [ ( 358) 691 164.9 1e-38 gi|55732098|emb|CAH92755.1| hypothetical protein [ ( 414) 691 164.9 1.2e-38 gi|118573855|sp|Q32PI8.1|RT27_BOVIN RecName: Full= ( 415) 689 164.5 1.6e-38 gi|38014602|gb|AAH03632.1| MRPS27 protein [Homo sa ( 222) 683 163.0 2.4e-38 gi|194390288|dbj|BAG61906.1| unnamed protein produ ( 358) 683 163.1 3.6e-38 gi|119616108|gb|EAW95702.1| mitochondrial ribosoma ( 358) 683 163.1 3.6e-38 gi|209572725|sp|Q92552.3|RT27_HUMAN RecName: Full= ( 414) 683 163.1 4.1e-38 gi|194387962|dbj|BAG61394.1| unnamed protein produ ( 428) 683 163.1 4.2e-38 gi|109077549|ref|XP_001098529.1| PREDICTED: simila ( 358) 651 155.8 5.5e-36 gi|109077547|ref|XP_001098623.1| PREDICTED: simila ( 388) 651 155.8 5.9e-36 gi|109077545|ref|XP_001098829.1| PREDICTED: simila ( 414) 651 155.8 6.2e-36 gi|149408537|ref|XP_001512710.1| PREDICTED: hypoth ( 457) 587 141.3 1.6e-31 gi|126320580|ref|XP_001363041.1| PREDICTED: hypoth ( 416) 545 131.8 1.1e-28 gi|224091341|ref|XP_002194813.1| PREDICTED: mitoch ( 384) 509 123.6 2.9e-26 gi|50761690|ref|XP_424803.1| PREDICTED: hypothetic ( 407) 489 119.1 7.1e-25 gi|194383686|dbj|BAG59201.1| unnamed protein produ ( 195) 469 114.4 8.9e-24 gi|114599743|ref|XP_001154560.1| PREDICTED: mitoch ( 436) 463 113.2 4.5e-23 gi|20987810|gb|AAH30521.1| MRPS27 protein [Homo sa ( 168) 405 99.8 1.8e-19 gi|114599747|ref|XP_001154505.1| PREDICTED: mitoch ( 363) 401 99.1 6.6e-19 gi|161612009|gb|AAI55952.1| LOC100127333 protein [ ( 397) 387 95.9 6.4e-18 gi|47227588|emb|CAG09585.1| unnamed protein produc ( 402) 356 88.9 8.5e-16 gi|50926011|gb|AAH79488.1| Zgc:100970 [Danio rerio ( 398) 327 82.3 8.1e-14 gi|149059167|gb|EDM10174.1| mitochondrial ribosoma ( 90) 276 70.4 7e-11 gi|149059168|gb|EDM10175.1| mitochondrial ribosoma ( 125) 272 69.6 1.7e-10 >>gi|29165736|gb|AAH49149.1| Mrps27 protein [Mus musculu (248 aa) initn: 919 init1: 919 opt: 923 Z-score: 1138.3 bits: 217.4 E(): 1.1e-54 Smith-Waterman score: 923; 97.260% identity (98.630% similar) in 146 aa overlap (8-153:29-174) 10 20 30 mKIAA0 TVICCILLQWEEERDFGASLLLSGLKQRNTVGLSSQLYG : :::::::::::::::::::::::::::::: gi|291 MMQEAFDVPSTQFLSLYVLYRCLAEKTELTWEEERDFGASLLLSGLKQRNTVGLSSQLYG 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA0 YALLGKVELQRGVRAVYHGMPLMWTPGYLDRALQVMERVASSPEDLKLGREVLDVLDGVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|291 YALLGKVELQRGVRAVYHGMPLMWTPGYLDRALQVMERVASSPEDLKLGREVLDVLDGVL 70 80 90 100 110 120 100 110 120 130 140 150 mKIAA0 KVVTSPDVQTSEAQPQEGEDGLGSANLVEQLDTEEPEQSKLPRYLERFQVIRSRN :::::::::::::::::::::::::::::::::::::::::::::::::. ::. gi|291 KVVTSPDVQTSEAQPQEGEDGLGSANLVEQLDTEEPEQSKLPRYLERFQASRSKLQELNR 130 140 150 160 170 180 gi|291 VESESLLTLTTQLVKEKLPACEAEDLATYEQKLREWHLERVQLIQREQEQREKAKQEYQA 190 200 210 220 230 240 >>gi|81874048|sp|Q8BK72.1|RT27_MOUSE RecName: Full=28S r (415 aa) initn: 919 init1: 919 opt: 923 Z-score: 1134.9 bits: 217.5 E(): 1.7e-54 Smith-Waterman score: 923; 97.260% identity (98.630% similar) in 146 aa overlap (8-153:196-341) 10 20 30 mKIAA0 TVICCILLQWEEERDFGASLLLSGLKQRNTVGLSSQL : :::::::::::::::::::::::::::: gi|818 EIMMQEAFDVPSTQFLSLYVLYRCLAEKTELTWEEERDFGASLLLSGLKQRNTVGLSSQL 170 180 190 200 210 220 40 50 60 70 80 90 mKIAA0 YGYALLGKVELQRGVRAVYHGMPLMWTPGYLDRALQVMERVASSPEDLKLGREVLDVLDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 YGYALLGKVELQRGVRAVYHGMPLMWTPGYLDRALQVMERVASSPEDLKLGREVLDVLDG 230 240 250 260 270 280 100 110 120 130 140 150 mKIAA0 VLKVVTSPDVQTSEAQPQEGEDGLGSANLVEQLDTEEPEQSKLPRYLERFQVIRSRN :::::::::::::::::::::::::::::::::::::::::::::::::::. ::. gi|818 VLKVVTSPDVQTSEAQPQEGEDGLGSANLVEQLDTEEPEQSKLPRYLERFQASRSKLQEL 290 300 310 320 330 340 gi|818 NRVESESLLTLTTQLVKEKLPACEAEDLATYEQKLREWHLERVQLIQREQEQREKAKQEY 350 360 370 380 390 400 >>gi|50980303|ref|NP_776118.2| mitochondrial ribosomal p (415 aa) initn: 919 init1: 919 opt: 923 Z-score: 1134.9 bits: 217.5 E(): 1.7e-54 Smith-Waterman score: 923; 97.260% identity (98.630% similar) in 146 aa overlap (8-153:196-341) 10 20 30 mKIAA0 TVICCILLQWEEERDFGASLLLSGLKQRNTVGLSSQL : :::::::::::::::::::::::::::: gi|509 EIMMQEAFDVPSTQFLSLYVLYRCLAEKTELTWEEERDFGASLLLSGLKQRNTVGLSSQL 170 180 190 200 210 220 40 50 60 70 80 90 mKIAA0 YGYALLGKVELQRGVRAVYHGMPLMWTPGYLDRALQVMERVASSPEDLKLGREVLDVLDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|509 YGYALLGKVELQRGVRAVYHGMPLMWTPGYLDRALQVMERVASSPEDLKLGREVLDVLDG 230 240 250 260 270 280 100 110 120 130 140 150 mKIAA0 VLKVVTSPDVQTSEAQPQEGEDGLGSANLVEQLDTEEPEQSKLPRYLERFQVIRSRN :::::::::::::::::::::::::::::::::::::::::::::::::::. ::. gi|509 VLKVVTSPDVQTSEAQPQEGEDGLGSANLVEQLDTEEPEQSKLPRYLERFQASRSKLQEL 290 300 310 320 330 340 gi|509 NRVESESLLTLTTQLVKEKLPACEAEDLATYEQKLREWHLERVQLIQREQEQREKAKQEY 350 360 370 380 390 400 >>gi|148668513|gb|EDL00832.1| mitochondrial ribosomal pr (415 aa) initn: 904 init1: 904 opt: 908 Z-score: 1116.5 bits: 214.1 E(): 1.8e-53 Smith-Waterman score: 908; 95.890% identity (97.260% similar) in 146 aa overlap (8-153:196-341) 10 20 30 mKIAA0 TVICCILLQWEEERDFGASLLLSGLKQRNTVGLSSQL : :::::::::::::::::::::::::::: gi|148 EIMMQEAFDVPSTQFLSLYVLYRCLAEKTELTWEEERDFGASLLLSGLKQRNTVGLSSQL 170 180 190 200 210 220 40 50 60 70 80 90 mKIAA0 YGYALLGKVELQRGVRAVYHGMPLMWTPGYLDRALQVMERVASSPEDLKLGREVLDVLDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 YGYALLGKVELQRGVRAVYHGMPLMWTPGYLDRALQVMERVASSPEDLKLGREVLDVLDG 230 240 250 260 270 280 100 110 120 130 140 150 mKIAA0 VLKVVTSPDVQTSEAQPQEGEDGLGSANLVEQLDTEEPEQSKLPRYLERFQVIRSRN :::::: :: :::::::::::::::::::::::::::::::::::::::::. ::. gi|148 VLKVVTCPDGQTSEAQPQEGEDGLGSANLVEQLDTEEPEQSKLPRYLERFQASRSKLQEL 290 300 310 320 330 340 gi|148 NRVESESLLTLTTQLVKEKLPACEAEDLATYEQKLREWHLERVQLIQREQEQREKAKQEY 350 360 370 380 390 400 >>gi|149059166|gb|EDM10173.1| mitochondrial ribosomal pr (268 aa) initn: 836 init1: 836 opt: 840 Z-score: 1036.0 bits: 198.6 E(): 5.3e-49 Smith-Waterman score: 840; 88.356% identity (95.205% similar) in 146 aa overlap (8-153:49-194) 10 20 30 mKIAA0 TVICCILLQWEEERDFGASLLLSGLKQRNTVGLSSQL : ::::::::::::: :::::::::::::: gi|149 EIMKQEAFEVPSTQFLSLYVLYHCLAEKTDLTWEEERDFGASLLLPGLKQRNTVGLSSQL 20 30 40 50 60 70 40 50 60 70 80 90 mKIAA0 YGYALLGKVELQRGVRAVYHGMPLMWTPGYLDRALQVMERVASSPEDLKLGREVLDVLDG :::::::::::: :.:::::::::.::::::::::::::::::::::.:: ::::::::: gi|149 YGYALLGKVELQCGLRAVYHGMPLIWTPGYLDRALQVMERVASSPEDVKLCREVLDVLDG 80 90 100 110 120 130 100 110 120 130 140 150 mKIAA0 VLKVVTSPDVQTSEAQPQEGEDGLGSANLVEQLDTEEPEQSKLPRYLERFQVIRSRN ::::: ::: :.::.:::::::.::::::::::::::::::.::.::::::. ::. gi|149 VLKVVMSPDGQASETQPQEGEDSLGSANLVEQLDTEEPEQSRLPQYLERFQASRSKLQEL 140 150 160 170 180 190 gi|149 NRVESESLLTLTTQLVKENLSACEAQDLATYEQKLREWHQERMQLVQREQEQREKAKQEY 200 210 220 230 240 250 >>gi|149059161|gb|EDM10168.1| mitochondrial ribosomal pr (415 aa) initn: 836 init1: 836 opt: 840 Z-score: 1033.1 bits: 198.7 E(): 7.7e-49 Smith-Waterman score: 840; 88.356% identity (95.205% similar) in 146 aa overlap (8-153:196-341) 10 20 30 mKIAA0 TVICCILLQWEEERDFGASLLLSGLKQRNTVGLSSQL : ::::::::::::: :::::::::::::: gi|149 EIMKQEAFEVPSTQFLSLYVLYHCLAEKTDLTWEEERDFGASLLLPGLKQRNTVGLSSQL 170 180 190 200 210 220 40 50 60 70 80 90 mKIAA0 YGYALLGKVELQRGVRAVYHGMPLMWTPGYLDRALQVMERVASSPEDLKLGREVLDVLDG :::::::::::: :.:::::::::.::::::::::::::::::::::.:: ::::::::: gi|149 YGYALLGKVELQCGLRAVYHGMPLIWTPGYLDRALQVMERVASSPEDVKLCREVLDVLDG 230 240 250 260 270 280 100 110 120 130 140 150 mKIAA0 VLKVVTSPDVQTSEAQPQEGEDGLGSANLVEQLDTEEPEQSKLPRYLERFQVIRSRN ::::: ::: :.::.:::::::.::::::::::::::::::.::.::::::. ::. gi|149 VLKVVMSPDGQASETQPQEGEDSLGSANLVEQLDTEEPEQSRLPQYLERFQASRSKLQEL 290 300 310 320 330 340 gi|149 NRVESESLLTLTTQLVKENLSACEAQDLATYEQKLREWHQERMQLVQREQEQREKAKQEY 350 360 370 380 390 400 >>gi|73950170|ref|XP_852973.1| PREDICTED: similar to mit (452 aa) initn: 713 init1: 713 opt: 713 Z-score: 876.9 bits: 169.9 E(): 3.9e-40 Smith-Waterman score: 713; 75.000% identity (89.583% similar) in 144 aa overlap (10-153:198-341) 10 20 30 mKIAA0 TVICCILLQWEEERDFGASLLLSGLKQRNTVGLSSQLYG :::::.::::::: ::::.:.::::::::: gi|739 MMQEAFEVPSTQLLSLHVLYHCLAKKTDCSWEEERNFGASLLLPGLKQKNSVGLSSQLYG 170 180 190 200 210 220 40 50 60 70 80 90 mKIAA0 YALLGKVELQRGVRAVYHGMPLMWTPGYLDRALQVMERVASSPEDLKLGREVLDVLDGVL ::::::::::::.:::::.:::.: ::::::::::::.::::::: :: :.: ::: .: gi|739 YALLGKVELQRGLRAVYHNMPLLWQPGYLDRALQVMEKVASSPEDGKLCAEALAVLDRTL 230 240 250 260 270 280 100 110 120 130 140 150 mKIAA0 KVVTSPDVQTSEAQPQEGEDGLGSANLVEQLDTEEPEQSKLPRYLERFQVIRSRN ..:.: :.:: ::.::::: ::..:.:::: :: ::::::::::::. ..:. gi|739 TALTAPAPQSSEEQPREGEDGQGSGDLLEQLDIEETEQSKLPRYLERFKDLQSKLEALGR 290 300 310 320 330 340 gi|739 VESESLLALTTRLIQEQLPTCEAEDMATYEQKLQQWHLERVHLIQREQEQRERAKREHEA 350 360 370 380 390 400 >>gi|194220153|ref|XP_001504081.2| PREDICTED: similar to (415 aa) initn: 691 init1: 691 opt: 696 Z-score: 856.6 bits: 166.0 E(): 5.3e-39 Smith-Waterman score: 696; 73.288% identity (88.356% similar) in 146 aa overlap (8-153:196-341) 10 20 30 mKIAA0 TVICCILLQWEEERDFGASLLLSGLKQRNTVGLSSQL :.:::::.::::::: ::::::.::::::: gi|194 EIMRQEAFEAPSTQLLSLYVLYHCLASKTDLSWEEERNFGASLLLPGLKQRNAVGLSSQL 170 180 190 200 210 220 40 50 60 70 80 90 mKIAA0 YGYALLGKVELQRGVRAVYHGMPLMWTPGYLDRALQVMERVASSPEDLKLGREVLDVLDG ::::::::::::.:.:::::.:::.: ::::::::::::.::: :: :: ..::::: gi|194 YGYALLGKVELQHGLRAVYHNMPLLWQPGYLDRALQVMEKVASCPEGEKLCGDALDVLDR 230 240 250 260 270 280 100 110 120 130 140 150 mKIAA0 VLKVVTSPDVQTSEAQPQEGEDGLGSANLVEQLDTEEPEQSKLPRYLERFQVIRSRN :::.::.: .:: ::.::::: :.::::.:.:: .::.::.::::::. ::. gi|194 VLKAVTAPAPTSSEEQPREGEDGQRPAELVEQMDVEERQQSRLPQYLERFQAARSQLQAL 290 300 310 320 330 340 gi|194 GRVESGSLLTLTTQLVHEELPTYEAEDMAAYEQQLQQWQQERARLVQREQEQRERAKQEH 350 360 370 380 390 400 >>gi|114599749|ref|XP_001154328.1| PREDICTED: mitochondr (358 aa) initn: 691 init1: 527 opt: 692 Z-score: 852.6 bits: 165.1 E(): 8.7e-39 Smith-Waterman score: 692; 72.603% identity (91.096% similar) in 146 aa overlap (8-153:140-284) 10 20 30 mKIAA0 TVICCILLQWEEERDFGASLLLSGLKQRNTVGLSSQL ..:::::.::::::: ::::.:.::.:::: gi|114 EVMMQEAFEVPSTQLLSLYVLFHCLAKKTDFSWEEERNFGASLLLPGLKQKNSVGFSSQL 110 120 130 140 150 160 40 50 60 70 80 90 mKIAA0 YGYALLGKVELQRGVRAVYHGMPLMWTPGYLDRALQVMERVASSPEDLKLGREVLDVLDG ::::::::::::.:.:::::.:::.: ::::::::::::.::.::::.:: ::.:::::. gi|114 YGYALLGKVELQQGLRAVYHNMPLIWKPGYLDRALQVMEKVAASPEDIKLCREALDVLDA 170 180 190 200 210 220 100 110 120 130 140 150 mKIAA0 VLKVVTSPDVQTSEAQPQEGEDGLGSANLVEQLDTEEPEQSKLPRYLERFQVIRSRN :::..:: : .:: : :. ::. :: .:::::: :: ::::::.:::::....:. gi|114 VLKALTSAD-GASEEQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQAL 230 240 250 260 270 280 gi|114 GKIESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEY 290 300 310 320 330 340 >>gi|114599745|ref|XP_001154270.1| PREDICTED: mitochondr (388 aa) initn: 691 init1: 527 opt: 692 Z-score: 852.1 bits: 165.1 E(): 9.3e-39 Smith-Waterman score: 692; 72.603% identity (91.096% similar) in 146 aa overlap (8-153:170-314) 10 20 30 mKIAA0 TVICCILLQWEEERDFGASLLLSGLKQRNTVGLSSQL ..:::::.::::::: ::::.:.::.:::: gi|114 EVMMQEAFEVPSTQLLSLYVLFHCLAKKTDFSWEEERNFGASLLLPGLKQKNSVGFSSQL 140 150 160 170 180 190 40 50 60 70 80 90 mKIAA0 YGYALLGKVELQRGVRAVYHGMPLMWTPGYLDRALQVMERVASSPEDLKLGREVLDVLDG ::::::::::::.:.:::::.:::.: ::::::::::::.::.::::.:: ::.:::::. gi|114 YGYALLGKVELQQGLRAVYHNMPLIWKPGYLDRALQVMEKVAASPEDIKLCREALDVLDA 200 210 220 230 240 250 100 110 120 130 140 150 mKIAA0 VLKVVTSPDVQTSEAQPQEGEDGLGSANLVEQLDTEEPEQSKLPRYLERFQVIRSRN :::..:: : .:: : :. ::. :: .:::::: :: ::::::.:::::....:. gi|114 VLKALTSAD-GASEEQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQAL 260 270 280 290 300 310 gi|114 GKIESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEY 320 330 340 350 360 370 154 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 18:06:57 2009 done: Fri Mar 13 18:11:09 2009 Total Scan time: 607.840 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]