FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0290.ptfa, 512 aa
 vs ./tmplib.26680 library

1768505 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.1990+/-0.00499; mu= 13.8709+/- 0.333
 mean_var=116.1876+/-26.534, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1190

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0394  ( 351 res)   mbj00290                   ( 351)  328   67 2.7e-12


>>mKIAA0394  ( 351 res)   mbj00290                        (351 aa)
 initn: 281 init1: 171 opt: 328  Z-score: 313.2  bits: 67.0 E(): 2.7e-12
Smith-Waterman score: 328;  29.961% identity (32.766% ungapped) in 257 aa overlap (4-251:87-330)

                                           10        20        30  
mKIAA0                            HPLQGDKN-HGFEVLYHCVKQGPVATKELADFI
                                     ::. .  :::.: .   .:    ::...::
mKIAA0 PHPDTMPEQQLLKPTEWSYCDYFWADKKDPQGNGTVAGFELLLQKQLKGKQMQKEMSEFI
         60        70        80        90       100       110      

             40        50        60        70        80         90 
mKIAA0 RERANIEETYSKAMAKLSKLASNGTPMGTFAPLWEVFRVSSDKLALCHLELTRKLH-DLL
       ::: .::: :.: .::::. .  .   :...  :   . :    :  ::... ::: .. 
mKIAA0 RERIKIEEEYAKNLAKLSQNSLAAQEEGSLGEAWAQVKKSLADEAEVHLKFSAKLHSEVE
        120       130       140       150       160       170      

             100       110       120       130       140           
mKIAA0 KDVLRYGEEQLKTHKKCKEEVLGTVDAVQMLSGVGQLLPKSRENYLSRCMDLE------R
       : .. . :.  :  ::: ...   .:  ..:..    . :.:.    :  :::      .
mKIAA0 KPLMNFRENFKKDMKKCDHHI---ADLRKQLASRYASVEKARKALTERQKDLEMKTQQLE
        180       190          200       210       220       230   

         150       160       170       180       190       200     
mKIAA0 LRRENTSQKEMDKAETKSKKAADSLRRSVDKYNSARADFEIKMLDSALRFQAMEEAHLQH
       ..  : ..... ::. :: .:.:.: : :: ::.:.. .  .:. ..:... .:  ... 
mKIAA0 IKLSNKTEEDIKKARRKSTQAGDDLMRCVDLYNQAQSKWFEEMVTTTLELERLEVERVEM
           240       250       260       270       280       290   

         210       220       230        240       250       260    
mKIAA0 MKALLGSYAHSVEDTHVQIGQVHEEFKQN-VENVTVDMLLRKFAESKGTGREKPGPLDFD
       ..  : .:..  ..: .        :.:. ::   ::.::::   .:             
mKIAA0 IRQHLCQYTQLRHETDM--------FNQSTVE--PVDQLLRKVDPAKDRELWVREHKTGN
           300       310                 320       330       340   

          270       280       290       300       310       320    
mKIAA0 AYSSAALQEAMKRLRGAKAFRLPGLSRREGISRGPSPVVLGSQDALPVATAFTEYVHAYF
                                                                   
mKIAA0 IRPVDMEI                                                    
           350                                                     




512 residues in 1 query   sequences
1768505 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:16:40 2006 done: Mon Mar 27 10:16:41 2006
 Scan time:  0.730 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]