FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1528.ptfa, 276 aa vs ./tmplib.26680 library 1768741 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.2316+/-0.00447; mu= 11.5022+/- 0.299 mean_var=94.3694+/-21.744, 0's: 0 Z-trim: 1 B-trim: 43 in 1/35 Lambda= 0.1320 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4160 ( 676 res) mbh04331 ( 676) 1130 225 8.1e-60 >>mKIAA4160 ( 676 res) mbh04331 (676 aa) initn: 1189 init1: 1099 opt: 1130 Z-score: 1166.3 bits: 224.9 E(): 8.1e-60 Smith-Waterman score: 1130; 60.145% identity (61.710% ungapped) in 276 aa overlap (2-270:396-671) 10 20 mKIAA1 PFLSAAGTSACL-----PACFLPPLALLTPS .: ::: .:: : ::.. . mKIAA4 SIPPGVPALPVKNLNGTGPVHPALAGMTGILLCAAGLPVCLTRAPKPILHPPPVSKSDVK 370 380 390 400 410 420 30 40 50 60 70 80 mKIAA1 CMPGTALTSRSLPEGAPKP--EPEQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTD .::. . :. . : .::.:.:.: ...: :.::: ::::.:..:::: . mKIAA4 PVPGVPGVCRKTKKKHLKKSKNPEDVVRRYMQKVKNPPDEDCTICMERLVTASGYEGVLR 430 440 450 460 470 480 90 100 110 120 130 140 mKIAA1 SKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWGKMEV .:.. : .:::: .:.: .:::::.::: :::::::::::.::.:::::::::: :::: mKIAA4 NKSVRPELVGRLGRCGHMYHLLCLVAMYSNGNKDGSLQCPTCKAIYGEKTGTQPPGKMEF 490 500 510 520 530 540 150 160 170 180 190 200 mKIAA1 FRFQMSLPGHEDCGTILIVYNIPHGIQGPEHPSPGKPFTARGFPRQCYLPDSPQGRKVLE . :::: : :: :::.:: ::::::::.::: ::::::::.::::.. .:::::. mKIAA4 HLIPHSLPGFADTQTIRIVYDIPTGIQGPEHPNPGKKFTARGFPRHCYLPNNEKGRKVLR 550 560 570 580 590 600 210 220 230 240 250 260 mKIAA1 LLKVAWKRRLIFTVGTSSTTGETDTVVWNEIHHKTEMDRNVTGHGYPDPNYLQNVLAELA :: .::.::::::.:::.::::.:::::::::::::. :.::::::: .::.::::::. mKIAA4 LLITAWERRLIFTIGTSNTTGESDTVVWNEIHHKTEFGSNLTGHGYPDASYLDNVLAELT 610 620 630 640 650 660 270 mKIAA1 AQGVTEDCLEQQ ::::.: mKIAA4 AQGVSEAMAKA 670 276 residues in 1 query sequences 1768741 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:47:24 2006 done: Mon Mar 27 10:47:25 2006 Scan time: 0.480 Display time: 0.010 Function used was FASTA [version 3.4t11 Apr 17, 2002]