FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4242.ptfa, 345 aa
 vs ./tmplib.26680 library

1768672 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.3645+/- 0.005; mu= 12.7685+/- 0.334
 mean_var=114.1951+/-26.914, 0's: 0 Z-trim: 1  B-trim: 43 in 1/35
 Lambda= 0.1200

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mFLJ00080  ( 882 res)   mkg00207                   ( 882)  742  139 9.4e-34


>>mFLJ00080  ( 882 res)   mkg00207                        (882 aa)
 initn: 570 init1: 165 opt: 742  Z-score: 698.4  bits: 139.0 E(): 9.4e-34
Smith-Waterman score: 742;  47.143% identity (50.382% ungapped) in 280 aa overlap (71-345:70-336)

               50        60        70        80        90       100
mKIAA4 WRPVRVVTQHNLHSQACLTAPGTMSEARRDSTSSLQRKKPPWLKLDIPAAVPPAAEEPSF
                                     : : :: .::: :.. ::     :  : . 
mFLJ00 APLDARAGLSSSIVPTMASADKNGSNLPSVSGSRLQSRKPPNLSITIPPPESQAPGEQDS
      40        50        60        70        80        90         

                110       120       130       140       150        
mKIAA4 LQPLRRQ--AFLRSVSMPAETARVPSPHHEPRRLVLQRQTSITQTIRRGTADWFGVSKDS
       . : ::.  :.:.:::.    .:    .   .:  ..::.:..:.::..::.::::: : 
mFLJ00 MLPERRKNPAYLKSVSLQEPRGRWQ--EGAEKRPGFRRQASLSQSIRKSTAQWFGVSGDW
     100       110       120         130       140       150       

      160        170       180       190       200       210       
mKIAA4 DST-QKWQRKSIRHCSQRYGKLKPQVIRELDLPSQDNVSLTSTETPPPLYVGPCQLGMQK
       ..  :.:.:.:..::: .::.:: .  :::.::::.  :. .::.: :     :.  : :
mFLJ00 EGKRQNWHRRSLHHCSVHYGRLKASCQRELELPSQEVPSFQGTESPKP-----CK--MPK
       160       170       180       190       200              210

       220       230       240       250       260       270       
mKIAA4 IIDPLARGRAFRMADDTADGLSAPHTPVTPGAASLCSFSSSRSGFNRLPRRRKRESVAKM
       :.::::::::::  :.. :   : : :.:::. :: ::.: :::...:::: :: :::.:
mFLJ00 IVDPLARGRAFRHPDEV-DRPHAAHPPLTPGVLSLTSFTSVRSGYSHLPRR-KRISVAHM
              220        230       240       250       260         

       280       290       300         310       320       330     
mKIAA4 SFRAAAALVKGRSIRDGTLRRGQ--RRSFTPASFLEEDMVDFPDELDTSFFARVRRAWGV
       ::.:::::.::::. :.: .: .  .:::.  :::::: ::  : .:.:::..  .  . 
mFLJ00 SFQAAAALLKGRSVLDATGQRCRHVKRSFAYPSFLEEDAVDGADTFDSSFFSK--EEMSS
      270       280       290       300       310       320        

         340                                                       
mKIAA4 APSPLSLDPP                                                  
        :. .  .::                                                  
mFLJ00 MPDDVFESPPLSASYFRGVPHSASPVSPDGVHIPLKEYSGGRALGPGTQRGKRIASKVKH
        330       340       350       360       370       380      




345 residues in 1 query   sequences
1768672 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:06:14 2006 done: Mon Mar 27 11:06:15 2006
 Scan time:  0.580 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]