# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mth01175.fasta.nr -Q ../query/mKIAA4242.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA4242, 345 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7920567 sequences Expectation_n fit: rho(ln(x))= 5.3156+/-0.000188; mu= 10.0480+/- 0.011 mean_var=80.5729+/-15.625, 0's: 35 Z-trim: 37 B-trim: 264 in 1/68 Lambda= 0.142883 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|16973676|gb|AAL32367.1| C16ORF8 [Mus musculus] ( 856) 1778 376.0 1.5e-101 gi|190360227|sp|Q6PIX5.2|RHDF1_MOUSE RecName: Full ( 856) 1778 376.0 1.5e-101 gi|148691816|gb|EDL23763.1| rhomboid family 1 (Dro ( 856) 1773 375.0 3e-101 gi|123781648|sp|Q499S9.1|RHDF1_RAT RecName: Full=R ( 856) 1770 374.4 4.6e-101 gi|20071092|gb|AAH27346.1| Rhomboid family 1 (Dros ( 856) 1769 374.2 5.3e-101 gi|149750980|ref|XP_001494786.1| PREDICTED: simila ( 856) 1709 361.8 2.8e-97 gi|183396440|gb|ACC62115.1| rhomboid family 1 (pre ( 856) 1701 360.2 8.8e-97 gi|190360184|sp|A7YWH9.1|RHDF1_BOVIN RecName: Full ( 856) 1689 357.7 4.9e-96 gi|190360187|sp|A9L8T6.1|RHDF1_PAPAN RecName: Full ( 855) 1682 356.3 1.3e-95 gi|57088635|ref|XP_547222.1| PREDICTED: similar to ( 856) 1668 353.4 9.9e-95 gi|73959240|ref|XP_865566.1| PREDICTED: similar to ( 870) 1668 353.4 1e-94 gi|218157236|gb|ACK58461.1| rhomboid family 1 (pre ( 856) 1666 353.0 1.3e-94 gi|194388326|dbj|BAG65547.1| unnamed protein produ ( 579) 1663 352.2 1.5e-94 gi|119606280|gb|EAW85874.1| rhomboid 5 homolog 1 ( ( 733) 1663 352.3 1.8e-94 gi|190360226|sp|Q96CC6.2|RHDF1_HUMAN RecName: Full ( 855) 1663 352.3 2e-94 gi|10438710|dbj|BAB15318.1| unnamed protein produc ( 855) 1663 352.3 2e-94 gi|14336678|gb|AAK61212.1|AE006462_4 unknown [Homo ( 862) 1663 352.3 2e-94 gi|114660243|ref|XP_510701.2| PREDICTED: hypotheti ( 862) 1663 352.3 2e-94 gi|15680161|gb|AAH14425.1| Rhomboid 5 homolog 1 (D ( 855) 1657 351.1 4.7e-94 gi|90653004|gb|ABD95905.1| RHBDG1 [Homo sapiens] ( 862) 1652 350.1 9.8e-94 gi|190360185|sp|B0VX73.1|RHDF1_CALJA RecName: Full ( 855) 1641 347.8 4.7e-93 gi|190360186|sp|B1MT31.1|RHDF1_CALMO RecName: Full ( 855) 1641 347.8 4.7e-93 gi|126335253|ref|XP_001364793.1| PREDICTED: simila ( 857) 1581 335.4 2.5e-89 gi|118098129|ref|XP_414944.2| PREDICTED: similar t ( 853) 1529 324.7 4.2e-86 gi|224069971|ref|XP_002196233.1| PREDICTED: simila ( 857) 1525 323.9 7.4e-86 gi|194388356|dbj|BAG65562.1| unnamed protein produ ( 602) 1437 305.6 1.6e-80 gi|190195531|gb|ACE73629.1| rhomboid family 1 (pre ( 868) 1435 305.3 2.9e-80 gi|193786971|dbj|BAG51794.1| unnamed protein produ ( 529) 1413 300.6 4.6e-79 gi|82184057|sp|Q6GMF8.1|RHDF1_DANRE RecName: Full= ( 857) 1375 293.0 1.5e-76 gi|119606281|gb|EAW85875.1| rhomboid 5 homolog 1 ( ( 489) 1348 287.2 4.6e-75 gi|189517537|ref|XP_001922004.1| PREDICTED: simila ( 583) 1208 258.4 2.6e-66 gi|47220058|emb|CAG12206.1| unnamed protein produc ( 894) 1098 235.9 2.4e-59 gi|18463968|gb|AAL73049.1| C16ORF8 [Sphoeroides ne ( 773) 1073 230.7 7.6e-58 gi|189525898|ref|XP_691851.3| PREDICTED: similar t ( 913) 1063 228.7 3.6e-57 gi|123237050|emb|CAM26658.1| rhomboid 5 homolog 1 ( 163) 1041 223.5 2.3e-56 gi|29568120|gb|AAO61491.1| C16orf8-like protein [T ( 855) 1002 216.1 2.1e-53 gi|223648418|gb|ACN10967.1| Rhomboid-like protease ( 788) 869 188.6 3.5e-45 gi|193806414|sp|A0JPA1.1|RHDF2_XENTR RecName: Full ( 826) 786 171.5 5.2e-40 gi|118099627|ref|XP_415618.2| PREDICTED: similar t ( 829) 758 165.8 2.8e-38 gi|74222744|dbj|BAE42238.1| unnamed protein produc ( 653) 742 162.4 2.3e-37 gi|224074988|ref|XP_002195482.1| PREDICTED: simila ( 825) 742 162.5 2.8e-37 gi|26324818|dbj|BAC26163.1| unnamed protein produc ( 827) 742 162.5 2.8e-37 gi|81873327|sp|Q80WQ6.1|RHDF2_MOUSE RecName: Full= ( 827) 742 162.5 2.8e-37 gi|126308402|ref|XP_001368925.1| PREDICTED: simila ( 827) 664 146.4 1.9e-32 gi|122131675|sp|Q00M95.1|RHDF2_CANFA RecName: Full ( 827) 663 146.2 2.2e-32 gi|93352558|ref|NP_001005498.2| rhomboid, veinlet- ( 827) 650 143.5 1.4e-31 gi|149723286|ref|XP_001493344.1| PREDICTED: simila ( 827) 649 143.3 1.6e-31 gi|109118386|ref|XP_001104742.1| PREDICTED: simila ( 827) 645 142.5 2.9e-31 gi|114670633|ref|XP_001151981.1| PREDICTED: rhombo ( 827) 642 141.9 4.5e-31 gi|221044566|dbj|BAH13960.1| unnamed protein produ ( 458) 636 140.4 6.7e-31 >>gi|16973676|gb|AAL32367.1| C16ORF8 [Mus musculus] (856 aa) initn: 1802 init1: 1778 opt: 1778 Z-score: 1979.6 bits: 376.0 E(): 1.5e-101 Smith-Waterman score: 1778; 100.000% identity (100.000% similar) in 265 aa overlap (64-328:1-265) 40 50 60 70 80 90 mKIAA4 GLGPWCPWRPVRVVTQHNLHSQACLTAPGTMSEARRDSTSSLQRKKPPWLKLDIPAAVPP :::::::::::::::::::::::::::::: gi|169 MSEARRDSTSSLQRKKPPWLKLDIPAAVPP 10 20 30 100 110 120 130 140 150 mKIAA4 AAEEPSFLQPLRRQAFLRSVSMPAETARVPSPHHEPRRLVLQRQTSITQTIRRGTADWFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 AAEEPSFLQPLRRQAFLRSVSMPAETARVPSPHHEPRRLVLQRQTSITQTIRRGTADWFG 40 50 60 70 80 90 160 170 180 190 200 210 mKIAA4 VSKDSDSTQKWQRKSIRHCSQRYGKLKPQVIRELDLPSQDNVSLTSTETPPPLYVGPCQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 VSKDSDSTQKWQRKSIRHCSQRYGKLKPQVIRELDLPSQDNVSLTSTETPPPLYVGPCQL 100 110 120 130 140 150 220 230 240 250 260 270 mKIAA4 GMQKIIDPLARGRAFRMADDTADGLSAPHTPVTPGAASLCSFSSSRSGFNRLPRRRKRES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 GMQKIIDPLARGRAFRMADDTADGLSAPHTPVTPGAASLCSFSSSRSGFNRLPRRRKRES 160 170 180 190 200 210 280 290 300 310 320 330 mKIAA4 VAKMSFRAAAALVKGRSIRDGTLRRGQRRSFTPASFLEEDMVDFPDELDTSFFARVRRAW ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 VAKMSFRAAAALVKGRSIRDGTLRRGQRRSFTPASFLEEDMVDFPDELDTSFFAREGVLH 220 230 240 250 260 270 340 mKIAA4 GVAPSPLSLDPP gi|169 EEMSTYPDEVFESPSEAALKDWEKAPDQADLTGGALDRSELERSHLMLPLERGWRKQKEG 280 290 300 310 320 330 >>gi|190360227|sp|Q6PIX5.2|RHDF1_MOUSE RecName: Full=Rho (856 aa) initn: 1802 init1: 1778 opt: 1778 Z-score: 1979.6 bits: 376.0 E(): 1.5e-101 Smith-Waterman score: 1778; 100.000% identity (100.000% similar) in 265 aa overlap (64-328:1-265) 40 50 60 70 80 90 mKIAA4 GLGPWCPWRPVRVVTQHNLHSQACLTAPGTMSEARRDSTSSLQRKKPPWLKLDIPAAVPP :::::::::::::::::::::::::::::: gi|190 MSEARRDSTSSLQRKKPPWLKLDIPAAVPP 10 20 30 100 110 120 130 140 150 mKIAA4 AAEEPSFLQPLRRQAFLRSVSMPAETARVPSPHHEPRRLVLQRQTSITQTIRRGTADWFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|190 AAEEPSFLQPLRRQAFLRSVSMPAETARVPSPHHEPRRLVLQRQTSITQTIRRGTADWFG 40 50 60 70 80 90 160 170 180 190 200 210 mKIAA4 VSKDSDSTQKWQRKSIRHCSQRYGKLKPQVIRELDLPSQDNVSLTSTETPPPLYVGPCQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|190 VSKDSDSTQKWQRKSIRHCSQRYGKLKPQVIRELDLPSQDNVSLTSTETPPPLYVGPCQL 100 110 120 130 140 150 220 230 240 250 260 270 mKIAA4 GMQKIIDPLARGRAFRMADDTADGLSAPHTPVTPGAASLCSFSSSRSGFNRLPRRRKRES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|190 GMQKIIDPLARGRAFRMADDTADGLSAPHTPVTPGAASLCSFSSSRSGFNRLPRRRKRES 160 170 180 190 200 210 280 290 300 310 320 330 mKIAA4 VAKMSFRAAAALVKGRSIRDGTLRRGQRRSFTPASFLEEDMVDFPDELDTSFFARVRRAW ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|190 VAKMSFRAAAALVKGRSIRDGTLRRGQRRSFTPASFLEEDMVDFPDELDTSFFAREGVLH 220 230 240 250 260 270 340 mKIAA4 GVAPSPLSLDPP gi|190 EEMSTYPDEVFESPSEAALKDWEKAPDQADLTGGALDRSELERSHLMLPLERGWRKQKEG 280 290 300 310 320 330 >>gi|148691816|gb|EDL23763.1| rhomboid family 1 (Drosoph (856 aa) initn: 1797 init1: 1773 opt: 1773 Z-score: 1974.0 bits: 375.0 E(): 3e-101 Smith-Waterman score: 1773; 99.623% identity (100.000% similar) in 265 aa overlap (64-328:1-265) 40 50 60 70 80 90 mKIAA4 GLGPWCPWRPVRVVTQHNLHSQACLTAPGTMSEARRDSTSSLQRKKPPWLKLDIPAAVPP ::::::::::::::::::::::::::.::: gi|148 MSEARRDSTSSLQRKKPPWLKLDIPAVVPP 10 20 30 100 110 120 130 140 150 mKIAA4 AAEEPSFLQPLRRQAFLRSVSMPAETARVPSPHHEPRRLVLQRQTSITQTIRRGTADWFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 AAEEPSFLQPLRRQAFLRSVSMPAETARVPSPHHEPRRLVLQRQTSITQTIRRGTADWFG 40 50 60 70 80 90 160 170 180 190 200 210 mKIAA4 VSKDSDSTQKWQRKSIRHCSQRYGKLKPQVIRELDLPSQDNVSLTSTETPPPLYVGPCQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VSKDSDSTQKWQRKSIRHCSQRYGKLKPQVIRELDLPSQDNVSLTSTETPPPLYVGPCQL 100 110 120 130 140 150 220 230 240 250 260 270 mKIAA4 GMQKIIDPLARGRAFRMADDTADGLSAPHTPVTPGAASLCSFSSSRSGFNRLPRRRKRES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 GMQKIIDPLARGRAFRMADDTADGLSAPHTPVTPGAASLCSFSSSRSGFNRLPRRRKRES 160 170 180 190 200 210 280 290 300 310 320 330 mKIAA4 VAKMSFRAAAALVKGRSIRDGTLRRGQRRSFTPASFLEEDMVDFPDELDTSFFARVRRAW ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VAKMSFRAAAALVKGRSIRDGTLRRGQRRSFTPASFLEEDMVDFPDELDTSFFAREGVLH 220 230 240 250 260 270 340 mKIAA4 GVAPSPLSLDPP gi|148 EEMSTYPDEVFESPSEAALKDWEKAPDQADLTGGALDRSELERSHLMLPLERGWRKQKEG 280 290 300 310 320 330 >>gi|123781648|sp|Q499S9.1|RHDF1_RAT RecName: Full=Rhomb (856 aa) initn: 1792 init1: 1768 opt: 1770 Z-score: 1970.7 bits: 374.4 E(): 4.6e-101 Smith-Waterman score: 1770; 95.374% identity (96.085% similar) in 281 aa overlap (64-344:1-277) 40 50 60 70 80 90 mKIAA4 GLGPWCPWRPVRVVTQHNLHSQACLTAPGTMSEARRDSTSSLQRKKPPWLKLDIPAAVPP ::::::::::::::::::::::::::.::: gi|123 MSEARRDSTSSLQRKKPPWLKLDIPAVVPP 10 20 30 100 110 120 130 140 150 mKIAA4 AAEEPSFLQPLRRQAFLRSVSMPAETARVPSPHHEPRRLVLQRQTSITQTIRRGTADWFG :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: gi|123 AAEEPSFLQPLRRQAFLRSVSMPAETARVPSPHHEPRRLALQRQTSITQTIRRGTADWFG 40 50 60 70 80 90 160 170 180 190 200 210 mKIAA4 VSKDSDSTQKWQRKSIRHCSQRYGKLKPQVIRELDLPSQDNVSLTSTETPPPLYVGPCQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 VSKDSDSTQKWQRKSIRHCSQRYGKLKPQVIRELDLPSQDNVSLTSTETPPPLYVGPCQL 100 110 120 130 140 150 220 230 240 250 260 270 mKIAA4 GMQKIIDPLARGRAFRMADDTADGLSAPHTPVTPGAASLCSFSSSRSGFNRLPRRRKRES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 GMQKIIDPLARGRAFRMADDTADGLSAPHTPVTPGAASLCSFSSSRSGFNRLPRRRKRES 160 170 180 190 200 210 280 290 300 310 320 330 mKIAA4 VAKMSFRAAAALVKGRSIRDGTLRRGQRRSFTPASFLEEDMVDFPDELDTSFFARVRRAW ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 VAKMSFRAAAALVKGRSIRDGTLRRGQRRSFTPASFLEEDMVDFPDELDTSFFARE---- 220 230 240 250 260 340 mKIAA4 GVAPSPLSLDPP :: :: : gi|123 GVLHEELSTYPDEVFESPSEAALKDWEKAPDQADLTGGALDRSELERSHLMLPLERGWRK 270 280 290 300 310 320 >>gi|20071092|gb|AAH27346.1| Rhomboid family 1 (Drosophi (856 aa) initn: 1793 init1: 1769 opt: 1769 Z-score: 1969.6 bits: 374.2 E(): 5.3e-101 Smith-Waterman score: 1769; 99.245% identity (100.000% similar) in 265 aa overlap (64-328:1-265) 40 50 60 70 80 90 mKIAA4 GLGPWCPWRPVRVVTQHNLHSQACLTAPGTMSEARRDSTSSLQRKKPPWLKLDIPAAVPP ::::::::::::::::::::::::::.::: gi|200 MSEARRDSTSSLQRKKPPWLKLDIPAVVPP 10 20 30 100 110 120 130 140 150 mKIAA4 AAEEPSFLQPLRRQAFLRSVSMPAETARVPSPHHEPRRLVLQRQTSITQTIRRGTADWFG ::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::: gi|200 AAEEPSFLQPVRRQAFLRSVSMPAETARVPSPHHEPRRLVLQRQTSITQTIRRGTADWFG 40 50 60 70 80 90 160 170 180 190 200 210 mKIAA4 VSKDSDSTQKWQRKSIRHCSQRYGKLKPQVIRELDLPSQDNVSLTSTETPPPLYVGPCQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|200 VSKDSDSTQKWQRKSIRHCSQRYGKLKPQVIRELDLPSQDNVSLTSTETPPPLYVGPCQL 100 110 120 130 140 150 220 230 240 250 260 270 mKIAA4 GMQKIIDPLARGRAFRMADDTADGLSAPHTPVTPGAASLCSFSSSRSGFNRLPRRRKRES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|200 GMQKIIDPLARGRAFRMADDTADGLSAPHTPVTPGAASLCSFSSSRSGFNRLPRRRKRES 160 170 180 190 200 210 280 290 300 310 320 330 mKIAA4 VAKMSFRAAAALVKGRSIRDGTLRRGQRRSFTPASFLEEDMVDFPDELDTSFFARVRRAW ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|200 VAKMSFRAAAALVKGRSIRDGTLRRGQRRSFTPASFLEEDMVDFPDELDTSFFAREGVLH 220 230 240 250 260 270 340 mKIAA4 GVAPSPLSLDPP gi|200 EEMSTYPDEVFESPSEAALKDWEKAPDQADLTGGALDRSELERSHLMLPLERGWRKQKEG 280 290 300 310 320 330 >>gi|149750980|ref|XP_001494786.1| PREDICTED: similar to (856 aa) initn: 1707 init1: 1707 opt: 1709 Z-score: 1902.7 bits: 361.8 E(): 2.8e-97 Smith-Waterman score: 1709; 91.815% identity (95.374% similar) in 281 aa overlap (64-344:1-277) 40 50 60 70 80 90 mKIAA4 GLGPWCPWRPVRVVTQHNLHSQACLTAPGTMSEARRDSTSSLQRKKPPWLKLDIPAAVPP ::::::::::::::::::::::::::.::: gi|149 MSEARRDSTSSLQRKKPPWLKLDIPAVVPP 10 20 30 100 110 120 130 140 150 mKIAA4 AAEEPSFLQPLRRQAFLRSVSMPAETARVPSPHHEPRRLVLQRQTSITQTIRRGTADWFG :.:::::::::::::::::::::::::.:::::::::: ::::::::::::::::::::: gi|149 AVEEPSFLQPLRRQAFLRSVSMPAETAHVPSPHHEPRRPVLQRQTSITQTIRRGTADWFG 40 50 60 70 80 90 160 170 180 190 200 210 mKIAA4 VSKDSDSTQKWQRKSIRHCSQRYGKLKPQVIRELDLPSQDNVSLTSTETPPPLYVGPCQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 VSKDSDSTQKWQRKSIRHCSQRYGKLKPQVIRELDLPSQDNVSLTSTETPPPLYVGPCQL 100 110 120 130 140 150 220 230 240 250 260 270 mKIAA4 GMQKIIDPLARGRAFRMADDTADGLSAPHTPVTPGAASLCSFSSSRSGFNRLPRRRKRES ::::::::::::::::.:::::::::.::::::::::::::::::::::.:::::::::: gi|149 GMQKIIDPLARGRAFRVADDTADGLSTPHTPVTPGAASLCSFSSSRSGFSRLPRRRKRES 160 170 180 190 200 210 280 290 300 310 320 330 mKIAA4 VAKMSFRAAAALVKGRSIRDGTLRRGQRRSFTPASFLEEDMVDFPDELDTSFFARVRRAW :::::::::::::::::.:::::::.:::::::::::::: .:::.::::::::: gi|149 VAKMSFRAAAALVKGRSVRDGTLRRAQRRSFTPASFLEEDTADFPEELDTSFFARE---- 220 230 240 250 260 340 mKIAA4 GVAPSPLSLDPP :: :: : gi|149 GVLHEELSTYPDEVFESPSEAALKDWEKAPEQGDLTGGALDRSELERSHLMLPLERGWRK 270 280 290 300 310 320 >>gi|183396440|gb|ACC62115.1| rhomboid family 1 (predict (856 aa) initn: 1724 init1: 1699 opt: 1701 Z-score: 1893.8 bits: 360.2 E(): 8.8e-97 Smith-Waterman score: 1701; 91.459% identity (94.662% similar) in 281 aa overlap (64-344:1-277) 40 50 60 70 80 90 mKIAA4 GLGPWCPWRPVRVVTQHNLHSQACLTAPGTMSEARRDSTSSLQRKKPPWLKLDIPAAVPP :::.::::::::::::::::::::::..:: gi|183 MSEVRRDSTSSLQRKKPPWLKLDIPAVAPP 10 20 30 100 110 120 130 140 150 mKIAA4 AAEEPSFLQPLRRQAFLRSVSMPAETARVPSPHHEPRRLVLQRQTSITQTIRRGTADWFG :::::::::::::::::::::::::::.::::.::::: ::::: ::::::::::::::: gi|183 AAEEPSFLQPLRRQAFLRSVSMPAETAHVPSPYHEPRRPVLQRQISITQTIRRGTADWFG 40 50 60 70 80 90 160 170 180 190 200 210 mKIAA4 VSKDSDSTQKWQRKSIRHCSQRYGKLKPQVIRELDLPSQDNVSLTSTETPPPLYVGPCQL ::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::: gi|183 VSKDSDSTQKWQRKSIRHCSQRYGKLKPQVMRELDLPSQDNVSLTSTETPPPLYVGPCQL 100 110 120 130 140 150 220 230 240 250 260 270 mKIAA4 GMQKIIDPLARGRAFRMADDTADGLSAPHTPVTPGAASLCSFSSSRSGFNRLPRRRKRES ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: gi|183 GMQKIIDPLARGRAFRMADDTADGLSTPHTPVTPGAASLCSFSSSRSGFNRLPRRRKRES 160 170 180 190 200 210 280 290 300 310 320 330 mKIAA4 VAKMSFRAAAALVKGRSIRDGTLRRGQRRSFTPASFLEEDMVDFPDELDTSFFARVRRAW :::::::::::::::::.::::::: :::::::::::::: .::::::::::::: gi|183 VAKMSFRAAAALVKGRSVRDGTLRRVQRRSFTPASFLEEDTADFPDELDTSFFARE---- 220 230 240 250 260 340 mKIAA4 GVAPSPLSLDPP :: :: : gi|183 GVLHEELSTYPDEVFESPSEAALKEWEKAPDQADLTGGALDRTELERSHLMLPLERGWRK 270 280 290 300 310 320 >>gi|190360184|sp|A7YWH9.1|RHDF1_BOVIN RecName: Full=Rho (856 aa) initn: 1687 init1: 1687 opt: 1689 Z-score: 1880.5 bits: 357.7 E(): 4.9e-96 Smith-Waterman score: 1689; 90.391% identity (94.306% similar) in 281 aa overlap (64-344:1-277) 40 50 60 70 80 90 mKIAA4 GLGPWCPWRPVRVVTQHNLHSQACLTAPGTMSEARRDSTSSLQRKKPPWLKLDIPAAVPP :.::::::.::::.::::::::::::.::: gi|190 MGEARRDSSSSLQHKKPPWLKLDIPAVVPP 10 20 30 100 110 120 130 140 150 mKIAA4 AAEEPSFLQPLRRQAFLRSVSMPAETARVPSPHHEPRRLVLQRQTSITQTIRRGTADWFG ::::::::::::::::::::::::: :::::::.:::: ::::: ::::::::::::::: gi|190 AAEEPSFLQPLRRQAFLRSVSMPAEPARVPSPHQEPRRPVLQRQMSITQTIRRGTADWFG 40 50 60 70 80 90 160 170 180 190 200 210 mKIAA4 VSKDSDSTQKWQRKSIRHCSQRYGKLKPQVIRELDLPSQDNVSLTSTETPPPLYVGPCQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|190 VSKDSDSTQKWQRKSIRHCSQRYGKLKPQVIRELDLPSQDNVSLTSTETPPPLYVGPCQL 100 110 120 130 140 150 220 230 240 250 260 270 mKIAA4 GMQKIIDPLARGRAFRMADDTADGLSAPHTPVTPGAASLCSFSSSRSGFNRLPRRRKRES :::::.::::::::::.:::.::: ::::::::::::::::::::::::::::::::::: gi|190 GMQKIVDPLARGRAFRLADDAADGPSAPHTPVTPGAASLCSFSSSRSGFNRLPRRRKRES 160 170 180 190 200 210 280 290 300 310 320 330 mKIAA4 VAKMSFRAAAALVKGRSIRDGTLRRGQRRSFTPASFLEEDMVDFPDELDTSFFARVRRAW :::::::::::::::::.:::::::.:::::::::::::: .::::::::::::: gi|190 VAKMSFRAAAALVKGRSVRDGTLRRAQRRSFTPASFLEEDTADFPDELDTSFFARE---- 220 230 240 250 260 340 mKIAA4 GVAPSPLSLDPP :: :: : gi|190 GVLHEELSTYPDEVFESPSEAALKDWERAPEQVDLTGGALDRSELERSHLMLPLERGWRK 270 280 290 300 310 320 >>gi|190360187|sp|A9L8T6.1|RHDF1_PAPAN RecName: Full=Rho (855 aa) initn: 1704 init1: 1681 opt: 1682 Z-score: 1872.7 bits: 356.3 E(): 1.3e-95 Smith-Waterman score: 1682; 90.036% identity (94.662% similar) in 281 aa overlap (64-344:1-277) 40 50 60 70 80 90 mKIAA4 GLGPWCPWRPVRVVTQHNLHSQACLTAPGTMSEARRDSTSSLQRKKPPWLKLDIPAAVPP :::::::::::::::::::::::::.:::: gi|190 MSEARRDSTSSLQRKKPPWLKLDIPSAVPP 10 20 30 100 110 120 130 140 150 mKIAA4 AAEEPSFLQPLRRQAFLRSVSMPAETARVPSPHHEPRRLVLQRQTSITQTIRRGTADWFG .::::::::::::::::::::::::::.. ::::: :: ::::::::::::::::::::: gi|190 TAEEPSFLQPLRRQAFLRSVSMPAETAHISSPHHELRRSVLQRQTSITQTIRRGTADWFG 40 50 60 70 80 90 160 170 180 190 200 210 mKIAA4 VSKDSDSTQKWQRKSIRHCSQRYGKLKPQVIRELDLPSQDNVSLTSTETPPPLYVGPCQL ::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::: gi|190 VSKDSDSTQKWQRKSIRHCSQRYGKLKPQVLRELDLPSQDNVSLTSTETPPPLYVGPCQL 100 110 120 130 140 150 220 230 240 250 260 270 mKIAA4 GMQKIIDPLARGRAFRMADDTADGLSAPHTPVTPGAASLCSFSSSRSGFNRLPRRRKRES ::::::::::::::::.:::::.::::::::::::::::::::::::::.:::::::::: gi|190 GMQKIIDPLARGRAFRVADDTAEGLSAPHTPVTPGAASLCSFSSSRSGFHRLPRRRKRES 160 170 180 190 200 210 280 290 300 310 320 330 mKIAA4 VAKMSFRAAAALVKGRSIRDGTLRRGQRRSFTPASFLEEDMVDFPDELDTSFFARVRRAW ::::::::::::.::::.:::::::.:::::::::::::: .::::::::::::: gi|190 VAKMSFRAAAALMKGRSVRDGTLRRAQRRSFTPASFLEEDTTDFPDELDTSFFARE---- 220 230 240 250 260 340 mKIAA4 GVAPSPLSLDPP :. :: : gi|190 GILHEELSTYPDEVFESPSEAALKDWEKAPEQADLTGGALDRSELERSHLMLPLERGWRK 270 280 290 300 310 320 >>gi|57088635|ref|XP_547222.1| PREDICTED: similar to rho (856 aa) initn: 1666 init1: 1666 opt: 1668 Z-score: 1857.1 bits: 353.4 E(): 9.9e-95 Smith-Waterman score: 1668; 90.747% identity (93.238% similar) in 281 aa overlap (64-344:1-277) 40 50 60 70 80 90 mKIAA4 GLGPWCPWRPVRVVTQHNLHSQACLTAPGTMSEARRDSTSSLQRKKPPWLKLDIPAAVPP ::::::::.::::::::::::::::::.:: gi|570 MSEARRDSASSLQRKKPPWLKLDIPAAAPP 10 20 30 100 110 120 130 140 150 mKIAA4 AAEEPSFLQPLRRQAFLRSVSMPAETARVPSPHHEPRRLVLQRQTSITQTIRRGTADWFG : :::: :::::::::::::::::::: ::::: : ::: :::::::::::::::::::: gi|570 APEEPSCLQPLRRQAFLRSVSMPAETAPVPSPHPELRRLGLQRQTSITQTIRRGTADWFG 40 50 60 70 80 90 160 170 180 190 200 210 mKIAA4 VSKDSDSTQKWQRKSIRHCSQRYGKLKPQVIRELDLPSQDNVSLTSTETPPPLYVGPCQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|570 VSKDSDSTQKWQRKSIRHCSQRYGKLKPQVIRELDLPSQDNVSLTSTETPPPLYVGPCQL 100 110 120 130 140 150 220 230 240 250 260 270 mKIAA4 GMQKIIDPLARGRAFRMADDTADGLSAPHTPVTPGAASLCSFSSSRSGFNRLPRRRKRES ::::::::::::::::.:::::::::.::::::::::::::::::::::::.:::::::: gi|570 GMQKIIDPLARGRAFRVADDTADGLSTPHTPVTPGAASLCSFSSSRSGFNRFPRRRKRES 160 170 180 190 200 210 280 290 300 310 320 330 mKIAA4 VAKMSFRAAAALVKGRSIRDGTLRRGQRRSFTPASFLEEDMVDFPDELDTSFFARVRRAW :::::::::::::::::.::::::: :::::::::::::: .::::::::::::: gi|570 VAKMSFRAAAALVKGRSVRDGTLRRVQRRSFTPASFLEEDTADFPDELDTSFFARE---- 220 230 240 250 260 340 mKIAA4 GVAPSPLSLDPP :: :: : gi|570 GVLHEELSTYPDEVFESPSEAALKDWEKATEQGDLTGGALDRSELERSHLMLPLERGWRK 270 280 290 300 310 320 345 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Wed Mar 18 07:03:50 2009 done: Wed Mar 18 07:09:53 2009 Total Scan time: 831.990 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]