FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1744.ptfa, 1157 aa
 vs ./tmplib.26680 library

1767860 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 12.4295+/-0.0093; mu= -17.2104+/- 0.616
 mean_var=487.2772+/-121.573, 0's: 0 Z-trim: 4  B-trim: 128 in 1/35
 Lambda= 0.0581

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0579  ( 233 res)   mbg02532                   ( 233)  402   48 1.6e-06


>>mKIAA0579  ( 233 res)   mbg02532                        (233 aa)
 initn: 382 init1: 221 opt: 402  Z-score: 209.2  bits: 48.3 E(): 1.6e-06
Smith-Waterman score: 402;  39.456% identity (40.278% ungapped) in 147 aa overlap (1002-1147:6-150)

             980       990      1000      1010      1020      1030 
mKIAA1 TAQSDSTSYISAVGNTNANGTIVPPQQMGPCGSCGRRCSCGTNGNLQLNSYYYPNPMPGP
                                     : :::   :::.::     . :. .:. ::
mKIAA0                          PGCIVCTSCGCSGSCGSNGLTVSYANYFQHPFSGP
                                        10        20        30     

            1040      1050      1060      1070      1080      1090 
mKIAA1 MYRLPSFFTLPSICNGSYLNQAHQSNGNQLPFFLPQTPYANGLVHDPVMGSQASYGMQQM
             :. .  .:...:..  . ..:. .:    .::: .... :::.:.:.....  :
mKIAA0 SVLTFPFLPFSPMCGNGYVSTQQYGGGSAFPVV--HTPYNGSVTPDPVLGGQSTFAVPPM
          40        50        60          70        80        90   

             1100      1110      1120      1130      1140      1150
mKIAA1 AGF-GRLYPVYPAPNVVANTSGSGPKKNGNVSCYNCGVSGHYAQDCKQSSMEANQQGNPT
        .: .    :: : ..:..:.::. ::.::.::::::..:: :::::: ::. :.::.  
mKIAA0 QNFMAGTAGVYQAQGLVGSTNGSSHKKSGNLSCYNCGATGHRAQDCKQPSMDFNRQGKQV
           100       110       120       130       140       150   

                                                                   
mKIAA1 NSQRTCF                                                     
                                                                   
mKIAA0 RGSHVLLALWLVAPERRKQETCFVLFFKMIFIHTVFFFFFFKIYLFIIICTYTEAVFRCT
           160       170       180       190       200       210   




1157 residues in 1 query   sequences
1767860 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:52:13 2006 done: Mon Mar 27 10:52:14 2006
 Scan time:  1.140 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]