# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/msp02004.fasta.nr -Q ../query/mFLJ00292.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
mFLJ00292, 166 aa
vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library
2727779818 residues in 7921681 sequences
statistics sampled from 60000 to 7921378 sequences
Expectation_n fit: rho(ln(x))= 4.6717+/-0.000181; mu= 8.9741+/- 0.010
mean_var=58.7564+/-11.574, 0's: 33 Z-trim: 35 B-trim: 2269 in 1/66
Lambda= 0.167319
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 36, opt: 24, open/ext: -10/-2, width: 16
The best scores are: opt bits E(7921681)
gi|60359824|dbj|BAD90131.1| mFLJ00292 protein [Mus ( 166) 1123 278.7 2.7e-73
gi|81878254|sp|Q8JZM6.1|TIFAB_MOUSE RecName: Full= ( 147) 985 245.4 2.6e-63
gi|116283249|gb|AAH05528.1| Tifab protein [Mus mus ( 147) 957 238.6 2.8e-61
gi|81882601|sp|Q5BK67.1|TIFAB_RAT RecName: Full=TR ( 147) 921 229.9 1.2e-58
gi|114602074|ref|XP_527016.2| PREDICTED: similar t ( 482) 820 205.9 6.5e-51
gi|34526521|dbj|BAC85138.1| FLJ00292 protein [Homo ( 194) 815 204.4 7.3e-51
gi|172046187|sp|Q6ZNK6.2|TIFAB_HUMAN RecName: Full ( 161) 810 203.2 1.5e-50
gi|119582619|gb|EAW62215.1| hCG1980385, isoform CR ( 777) 815 204.9 2.2e-50
gi|109078832|ref|XP_001105096.1| PREDICTED: hypoth ( 282) 810 203.3 2.3e-50
gi|194219911|ref|XP_001917929.1| PREDICTED: simila ( 204) 774 194.6 7.3e-48
gi|194668930|ref|XP_602849.4| PREDICTED: similar t ( 197) 723 182.2 3.6e-44
gi|73971332|ref|XP_538636.2| PREDICTED: hypothetic ( 196) 720 181.5 5.9e-44
gi|126290140|ref|XP_001370035.1| PREDICTED: simila ( 165) 620 157.3 9.6e-37
gi|33086586|gb|AAP92605.1| Ab2-389 [Rattus norvegi ( 421) 231 63.7 3.7e-08
gi|81883742|sp|Q5XIB9.1|TIFA_RAT RecName: Full=TRA ( 185) 227 62.5 3.8e-08
gi|149698279|ref|XP_001503516.1| PREDICTED: simila ( 185) 224 61.8 6.2e-08
gi|74751795|sp|Q96CG3.1|TIFA_HUMAN RecName: Full=T ( 184) 221 61.0 1e-07
gi|123797702|sp|Q793I8.1|TIFA_MOUSE RecName: Full= ( 184) 220 60.8 1.2e-07
gi|126331162|ref|XP_001365175.1| PREDICTED: simila ( 179) 219 60.5 1.4e-07
gi|74147494|dbj|BAE38653.1| unnamed protein produc ( 184) 219 60.5 1.4e-07
gi|42718028|gb|AAQ74975.2| TRAF2-binding protein [ ( 193) 218 60.3 1.8e-07
gi|45356820|gb|AAS58449.1| TRAF2 binding protein [ ( 193) 217 60.1 2.1e-07
gi|74002374|ref|XP_545028.2| PREDICTED: similar to ( 208) 216 59.9 2.6e-07
gi|55623106|ref|XP_526660.1| PREDICTED: TRAF-inter ( 184) 215 59.6 2.8e-07
gi|190360160|sp|A2VDM0.1|TIFA_BOVIN RecName: Full= ( 185) 213 59.1 3.9e-07
gi|109075389|ref|XP_001092116.1| PREDICTED: simila ( 185) 210 58.4 6.5e-07
gi|223648902|gb|ACN11209.1| TRAF2-binding protein ( 198) 206 57.4 1.3e-06
gi|224049156|ref|XP_002193754.1| PREDICTED: hypoth ( 187) 180 51.1 9.9e-05
gi|149638026|ref|XP_001506200.1| PREDICTED: simila ( 185) 173 49.4 0.00032
gi|50746767|ref|XP_420645.1| PREDICTED: similar to ( 187) 172 49.2 0.00038
>>gi|60359824|dbj|BAD90131.1| mFLJ00292 protein [Mus mus (166 aa)
initn: 1123 init1: 1123 opt: 1123 Z-score: 1472.2 bits: 278.7 E(): 2.7e-73
Smith-Waterman score: 1123; 100.000% identity (100.000% similar) in 166 aa overlap (1-166:1-166)
10 20 30 40 50 60
mFLJ00 RPGLRKLQKCVFVMFFPGSMERPLTVLQVSLYHPTQGPVAFAHVPQQLQHDASRLLVGRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|603 RPGLRKLQKCVFVMFFPGSMERPLTVLQVSLYHPTQGPVAFAHVPQQLQHDASRLLVGRG
10 20 30 40 50 60
70 80 90 100 110 120
mFLJ00 QNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLTRKSCVWVNGLPLRYLEQVPLGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|603 QNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLTRKSCVWVNGLPLRYLEQVPLGT
70 80 90 100 110 120
130 140 150 160
mFLJ00 INRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYRPKAQETDE
::::::::::::::::::::::::::::::::::::::::::::::
gi|603 INRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYRPKAQETDE
130 140 150 160
>>gi|81878254|sp|Q8JZM6.1|TIFAB_MOUSE RecName: Full=TRAF (147 aa)
initn: 985 init1: 985 opt: 985 Z-score: 1292.9 bits: 245.4 E(): 2.6e-63
Smith-Waterman score: 985; 100.000% identity (100.000% similar) in 147 aa overlap (20-166:1-147)
10 20 30 40 50 60
mFLJ00 RPGLRKLQKCVFVMFFPGSMERPLTVLQVSLYHPTQGPVAFAHVPQQLQHDASRLLVGRG
:::::::::::::::::::::::::::::::::::::::::
gi|818 MERPLTVLQVSLYHPTQGPVAFAHVPQQLQHDASRLLVGRG
10 20 30 40
70 80 90 100 110 120
mFLJ00 QNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLTRKSCVWVNGLPLRYLEQVPLGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|818 QNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLTRKSCVWVNGLPLRYLEQVPLGT
50 60 70 80 90 100
130 140 150 160
mFLJ00 INRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYRPKAQETDE
::::::::::::::::::::::::::::::::::::::::::::::
gi|818 INRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYRPKAQETDE
110 120 130 140
>>gi|116283249|gb|AAH05528.1| Tifab protein [Mus musculu (147 aa)
initn: 957 init1: 957 opt: 957 Z-score: 1256.4 bits: 238.6 E(): 2.8e-61
Smith-Waterman score: 957; 97.959% identity (98.639% similar) in 147 aa overlap (20-166:1-147)
10 20 30 40 50 60
mFLJ00 RPGLRKLQKCVFVMFFPGSMERPLTVLQVSLYHPTQGPVAFAHVPQQLQHDASRLLVGRG
:::::::::::::::::: ::::.:: ::::::::::::::
gi|116 MERPLTVLQVSLYHPTQGSVAFAQVPPQLQHDASRLLVGRG
10 20 30 40
70 80 90 100 110 120
mFLJ00 QNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLTRKSCVWVNGLPLRYLEQVPLGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|116 QNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLTRKSCVWVNGLPLRYLEQVPLGT
50 60 70 80 90 100
130 140 150 160
mFLJ00 INRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYRPKAQETDE
::::::::::::::::::::::::::::::::::::::::::::::
gi|116 INRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYRPKAQETDE
110 120 130 140
>>gi|81882601|sp|Q5BK67.1|TIFAB_RAT RecName: Full=TRAF-i (147 aa)
initn: 921 init1: 921 opt: 921 Z-score: 1209.4 bits: 229.9 E(): 1.2e-58
Smith-Waterman score: 921; 91.837% identity (97.959% similar) in 147 aa overlap (20-166:1-147)
10 20 30 40 50 60
mFLJ00 RPGLRKLQKCVFVMFFPGSMERPLTVLQVSLYHPTQGPVAFAHVPQQLQHDASRLLVGRG
:::::::::::::::::::::::.:: ::::::::::::::
gi|818 MERPLTVLQVSLYHPTQGPVAFAKVPLQLQHDASRLLVGRG
10 20 30 40
70 80 90 100 110 120
mFLJ00 QNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLTRKSCVWVNGLPLRYLEQVPLGT
:.::::::::::::.:: :::::::::.:::::::::::.:::::::::::::::::: .
gi|818 QDTHLQLQLPQLSRHHLCLEPYLEKGSNLLAFCLKVLTRQSCVWVNGLPLRYLEQVPLHS
50 60 70 80 90 100
130 140 150 160
mFLJ00 INRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYRPKAQETDE
.:::::::::::.:::::::::.:::::::::::::::::::::::
gi|818 VNRISFSGIQMLIRKEGGASLEAFVCYFHLSPSPLIYRPKAQETDE
110 120 130 140
>>gi|114602074|ref|XP_527016.2| PREDICTED: similar to FL (482 aa)
initn: 815 init1: 815 opt: 820 Z-score: 1070.4 bits: 205.9 E(): 6.5e-51
Smith-Waterman score: 820; 74.691% identity (91.358% similar) in 162 aa overlap (5-166:308-468)
10 20 30
mFLJ00 RPGLRKLQKCVFVMFFPGSMERPLTVLQVSLYHP
: .:.... .:::.:::::.::::::
gi|114 AIKLSGPWRSIRALPALPKPAYSLSRAHSCRTRARCALAIR-TSSMEKPLTVLRVSLYHP
280 290 300 310 320 330
40 50 60 70 80 90
mFLJ00 TQGPVAFAHVPQQLQHDASRLLVGRGQNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCL
: :: :::.:: .::::.: ::.::::..:::::::.::: ::::::::::::.::::::
gi|114 TLGPSAFANVPPRLQHDTSPLLLGRGQDAHLQLQLPHLSRRHLSLEPYLEKGSALLAFCL
340 350 360 370 380 390
100 110 120 130 140 150
mFLJ00 KVLTRKSCVWVNGLPLRYLEQVPLGTINRISFSGIQMLVRKEGGASLETFVCYFHLSPSP
:.:.::.::::::: :::::::::.:.::.:::::::::: : :.:::.::::::.::::
gi|114 KALSRKGCVWVNGLTLRYLEQVPLSTVNRVSFSGIQMLVRVEEGTSLEAFVCYFHVSPSP
400 410 420 430 440 450
160
mFLJ00 LIYRPKAQETDE
:::::.:.::::
gi|114 LIYRPEAEETDEWEGISQEQPPPGSG
460 470 480
>>gi|34526521|dbj|BAC85138.1| FLJ00292 protein [Homo sap (194 aa)
initn: 815 init1: 815 opt: 815 Z-score: 1069.4 bits: 204.4 E(): 7.3e-51
Smith-Waterman score: 815; 80.405% identity (94.595% similar) in 148 aa overlap (19-166:33-180)
10 20 30 40
mFLJ00 RPGLRKLQKCVFVMFFPGSMERPLTVLQVSLYHPTQGPVAFAHVPQQL
:::.:::::.::::::: :: :::.:: .:
gi|345 LPALPKPAYSLSRAHSCRTRARCAPAIRTSSMEKPLTVLRVSLYHPTLGPSAFANVPPRL
10 20 30 40 50 60
50 60 70 80 90 100
mFLJ00 QHDASRLLVGRGQNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLTRKSCVWVNGL
:::.: ::.::::..:::::::.::: ::::::::::::.:::::::.:.::.:::::::
gi|345 QHDTSPLLLGRGQDAHLQLQLPRLSRRHLSLEPYLEKGSALLAFCLKALSRKGCVWVNGL
70 80 90 100 110 120
110 120 130 140 150 160
mFLJ00 PLRYLEQVPLGTINRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYRPKAQETDE
:::::::::.:.::.:::::::::: : :.:::.::::::.:::::::::.:.::::
gi|345 TLRYLEQVPLSTVNRVSFSGIQMLVRVEEGTSLEAFVCYFHVSPSPLIYRPEAEETDEWE
130 140 150 160 170 180
gi|345 GISQGQPPPGSG
190
>>gi|172046187|sp|Q6ZNK6.2|TIFAB_HUMAN RecName: Full=TRA (161 aa)
initn: 810 init1: 810 opt: 810 Z-score: 1064.0 bits: 203.2 E(): 1.5e-50
Smith-Waterman score: 810; 80.272% identity (94.558% similar) in 147 aa overlap (20-166:1-147)
10 20 30 40 50 60
mFLJ00 RPGLRKLQKCVFVMFFPGSMERPLTVLQVSLYHPTQGPVAFAHVPQQLQHDASRLLVGRG
::.:::::.::::::: :: :::.:: .::::.: ::.:::
gi|172 MEKPLTVLRVSLYHPTLGPSAFANVPPRLQHDTSPLLLGRG
10 20 30 40
70 80 90 100 110 120
mFLJ00 QNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLTRKSCVWVNGLPLRYLEQVPLGT
:..:::::::.::: ::::::::::::.:::::::.:.::.::::::: :::::::::.:
gi|172 QDAHLQLQLPRLSRRHLSLEPYLEKGSALLAFCLKALSRKGCVWVNGLTLRYLEQVPLST
50 60 70 80 90 100
130 140 150 160
mFLJ00 INRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYRPKAQETDE
.::.:::::::::: : :.:::.::::::.:::::::::.:.::::
gi|172 VNRVSFSGIQMLVRVEEGTSLEAFVCYFHVSPSPLIYRPEAEETDEWEGISQGQPPPGSG
110 120 130 140 150 160
>>gi|119582619|gb|EAW62215.1| hCG1980385, isoform CRA_a (777 aa)
initn: 815 init1: 815 opt: 815 Z-score: 1061.0 bits: 204.9 E(): 2.2e-50
Smith-Waterman score: 815; 80.405% identity (94.595% similar) in 148 aa overlap (19-166:312-459)
10 20 30 40
mFLJ00 RPGLRKLQKCVFVMFFPGSMERPLTVLQVSLYHPTQGPVAFAHVPQQL
:::.:::::.::::::: :: :::.:: .:
gi|119 KRHISLNIRFRMKTHVCKAYVKHVMHERTSSMEKPLTVLRVSLYHPTLGPSAFANVPPRL
290 300 310 320 330 340
50 60 70 80 90 100
mFLJ00 QHDASRLLVGRGQNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLTRKSCVWVNGL
:::.: ::.::::..:::::::.::: ::::::::::::.:::::::.:.::.:::::::
gi|119 QHDTSPLLLGRGQDAHLQLQLPRLSRRHLSLEPYLEKGSALLAFCLKALSRKGCVWVNGL
350 360 370 380 390 400
110 120 130 140 150 160
mFLJ00 PLRYLEQVPLGTINRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYRPKAQETDE
:::::::::.:.::.:::::::::: : :.:::.::::::.:::::::::.:.::::
gi|119 TLRYLEQVPLSTVNRVSFSGIQMLVRVEEGTSLEAFVCYFHVSPSPLIYRPEAEETDEWE
410 420 430 440 450 460
gi|119 GISQGQPPPGSGCQQFLFSAQKDDRFAPRASYKEVQLHSQALSIFSIRKTEGFSCSHGPG
470 480 490 500 510 520
>>gi|109078832|ref|XP_001105096.1| PREDICTED: hypothetic (282 aa)
initn: 806 init1: 806 opt: 810 Z-score: 1060.6 bits: 203.3 E(): 2.3e-50
Smith-Waterman score: 810; 74.684% identity (91.772% similar) in 158 aa overlap (9-166:69-225)
10 20 30
mFLJ00 RPGLRKLQKCVFVMFFPGSMERPLTVLQVSLYHPTQGP
.:.... :.:::.:::.::::::::: ::
gi|109 LRPSGKCHVAYTLPKPAYSLPRAHSCRTRVRCALAIR-PSSMEKPLTILQVSLYHPTLGP
40 50 60 70 80 90
40 50 60 70 80 90
mFLJ00 VAFAHVPQQLQHDASRLLVGRGQNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLT
:::.:: .::::.: ::.::::..:::::::.::: ::::::::::::..::::::::.
gi|109 SAFANVPPRLQHDTSPLLLGRGQDAHLQLQLPHLSRRHLSLEPYLEKGSAMLAFCLKVLS
100 110 120 130 140 150
100 110 120 130 140 150
mFLJ00 RKSCVWVNGLPLRYLEQVPLGTINRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYR
::.::::::: ::::::: :. .::. ::::::::: : :.:::.::::::.::::::::
gi|109 RKGCVWVNGLTLRYLEQVTLSPVNRLFFSGIQMLVRVEEGTSLEAFVCYFHVSPSPLIYR
160 170 180 190 200 210
160
mFLJ00 PKAQETDE
:.:.::::
gi|109 PEAEETDEWEGISQEQPPPGSGQQTSGCLGFLHGPSQTWDSPPQPRPGGGTEIQLQREPP
220 230 240 250 260 270
>>gi|194219911|ref|XP_001917929.1| PREDICTED: similar to (204 aa)
initn: 774 init1: 774 opt: 774 Z-score: 1015.6 bits: 194.6 E(): 7.3e-48
Smith-Waterman score: 774; 74.830% identity (95.238% similar) in 147 aa overlap (20-166:1-147)
10 20 30 40 50 60
mFLJ00 RPGLRKLQKCVFVMFFPGSMERPLTVLQVSLYHPTQGPVAFAHVPQQLQHDASRLLVGRG
::::::::.:::.::::::.::..:: :::::.: ::::::
gi|194 MERPLTVLRVSLHHPTQGPAAFTNVPLQLQHDTSPLLVGRG
10 20 30 40
70 80 90 100 110 120
mFLJ00 QNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLTRKSCVWVNGLPLRYLEQVPLGT
...:.::.::.::: ::::::: ::::.::.::::.:.:..::::::: ::.::::::.:
gi|194 RDAHIQLRLPNLSRRHLSLEPYREKGSALLVFCLKALSRRGCVWVNGLTLRFLEQVPLST
50 60 70 80 90 100
130 140 150 160
mFLJ00 INRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYRPKAQETDE
.::..:.::::.:. :::.:::.::: ::::::::::::.:.::::
gi|194 VNRVTFAGIQMVVHVEGGTSLEAFVCCFHLSPSPLIYRPQAEETDEWESIPQEQPPPGSG
110 120 130 140 150 160
gi|194 ERALGHLGFLHGPSQIQDDPPQPSPGGGTEIQFQREPPDSLLC
170 180 190 200
166 residues in 1 query sequences
2727779818 residues in 7921681 library sequences
Tcomplib [34.26] (2 proc)
start: Fri Mar 13 04:39:38 2009 done: Fri Mar 13 04:43:55 2009
Total Scan time: 619.290 Total Display time: 0.020
Function used was FASTA [version 34.26.5 April 26, 2007]