# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/msp02004.fasta.nr -Q ../query/mFLJ00292.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mFLJ00292, 166 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921378 sequences Expectation_n fit: rho(ln(x))= 4.6717+/-0.000181; mu= 8.9741+/- 0.010 mean_var=58.7564+/-11.574, 0's: 33 Z-trim: 35 B-trim: 2269 in 1/66 Lambda= 0.167319 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|60359824|dbj|BAD90131.1| mFLJ00292 protein [Mus ( 166) 1123 278.7 2.7e-73 gi|81878254|sp|Q8JZM6.1|TIFAB_MOUSE RecName: Full= ( 147) 985 245.4 2.6e-63 gi|116283249|gb|AAH05528.1| Tifab protein [Mus mus ( 147) 957 238.6 2.8e-61 gi|81882601|sp|Q5BK67.1|TIFAB_RAT RecName: Full=TR ( 147) 921 229.9 1.2e-58 gi|114602074|ref|XP_527016.2| PREDICTED: similar t ( 482) 820 205.9 6.5e-51 gi|34526521|dbj|BAC85138.1| FLJ00292 protein [Homo ( 194) 815 204.4 7.3e-51 gi|172046187|sp|Q6ZNK6.2|TIFAB_HUMAN RecName: Full ( 161) 810 203.2 1.5e-50 gi|119582619|gb|EAW62215.1| hCG1980385, isoform CR ( 777) 815 204.9 2.2e-50 gi|109078832|ref|XP_001105096.1| PREDICTED: hypoth ( 282) 810 203.3 2.3e-50 gi|194219911|ref|XP_001917929.1| PREDICTED: simila ( 204) 774 194.6 7.3e-48 gi|194668930|ref|XP_602849.4| PREDICTED: similar t ( 197) 723 182.2 3.6e-44 gi|73971332|ref|XP_538636.2| PREDICTED: hypothetic ( 196) 720 181.5 5.9e-44 gi|126290140|ref|XP_001370035.1| PREDICTED: simila ( 165) 620 157.3 9.6e-37 gi|33086586|gb|AAP92605.1| Ab2-389 [Rattus norvegi ( 421) 231 63.7 3.7e-08 gi|81883742|sp|Q5XIB9.1|TIFA_RAT RecName: Full=TRA ( 185) 227 62.5 3.8e-08 gi|149698279|ref|XP_001503516.1| PREDICTED: simila ( 185) 224 61.8 6.2e-08 gi|74751795|sp|Q96CG3.1|TIFA_HUMAN RecName: Full=T ( 184) 221 61.0 1e-07 gi|123797702|sp|Q793I8.1|TIFA_MOUSE RecName: Full= ( 184) 220 60.8 1.2e-07 gi|126331162|ref|XP_001365175.1| PREDICTED: simila ( 179) 219 60.5 1.4e-07 gi|74147494|dbj|BAE38653.1| unnamed protein produc ( 184) 219 60.5 1.4e-07 gi|42718028|gb|AAQ74975.2| TRAF2-binding protein [ ( 193) 218 60.3 1.8e-07 gi|45356820|gb|AAS58449.1| TRAF2 binding protein [ ( 193) 217 60.1 2.1e-07 gi|74002374|ref|XP_545028.2| PREDICTED: similar to ( 208) 216 59.9 2.6e-07 gi|55623106|ref|XP_526660.1| PREDICTED: TRAF-inter ( 184) 215 59.6 2.8e-07 gi|190360160|sp|A2VDM0.1|TIFA_BOVIN RecName: Full= ( 185) 213 59.1 3.9e-07 gi|109075389|ref|XP_001092116.1| PREDICTED: simila ( 185) 210 58.4 6.5e-07 gi|223648902|gb|ACN11209.1| TRAF2-binding protein ( 198) 206 57.4 1.3e-06 gi|224049156|ref|XP_002193754.1| PREDICTED: hypoth ( 187) 180 51.1 9.9e-05 gi|149638026|ref|XP_001506200.1| PREDICTED: simila ( 185) 173 49.4 0.00032 gi|50746767|ref|XP_420645.1| PREDICTED: similar to ( 187) 172 49.2 0.00038 >>gi|60359824|dbj|BAD90131.1| mFLJ00292 protein [Mus mus (166 aa) initn: 1123 init1: 1123 opt: 1123 Z-score: 1472.2 bits: 278.7 E(): 2.7e-73 Smith-Waterman score: 1123; 100.000% identity (100.000% similar) in 166 aa overlap (1-166:1-166) 10 20 30 40 50 60 mFLJ00 RPGLRKLQKCVFVMFFPGSMERPLTVLQVSLYHPTQGPVAFAHVPQQLQHDASRLLVGRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|603 RPGLRKLQKCVFVMFFPGSMERPLTVLQVSLYHPTQGPVAFAHVPQQLQHDASRLLVGRG 10 20 30 40 50 60 70 80 90 100 110 120 mFLJ00 QNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLTRKSCVWVNGLPLRYLEQVPLGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|603 QNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLTRKSCVWVNGLPLRYLEQVPLGT 70 80 90 100 110 120 130 140 150 160 mFLJ00 INRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYRPKAQETDE :::::::::::::::::::::::::::::::::::::::::::::: gi|603 INRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYRPKAQETDE 130 140 150 160 >>gi|81878254|sp|Q8JZM6.1|TIFAB_MOUSE RecName: Full=TRAF (147 aa) initn: 985 init1: 985 opt: 985 Z-score: 1292.9 bits: 245.4 E(): 2.6e-63 Smith-Waterman score: 985; 100.000% identity (100.000% similar) in 147 aa overlap (20-166:1-147) 10 20 30 40 50 60 mFLJ00 RPGLRKLQKCVFVMFFPGSMERPLTVLQVSLYHPTQGPVAFAHVPQQLQHDASRLLVGRG ::::::::::::::::::::::::::::::::::::::::: gi|818 MERPLTVLQVSLYHPTQGPVAFAHVPQQLQHDASRLLVGRG 10 20 30 40 70 80 90 100 110 120 mFLJ00 QNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLTRKSCVWVNGLPLRYLEQVPLGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 QNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLTRKSCVWVNGLPLRYLEQVPLGT 50 60 70 80 90 100 130 140 150 160 mFLJ00 INRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYRPKAQETDE :::::::::::::::::::::::::::::::::::::::::::::: gi|818 INRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYRPKAQETDE 110 120 130 140 >>gi|116283249|gb|AAH05528.1| Tifab protein [Mus musculu (147 aa) initn: 957 init1: 957 opt: 957 Z-score: 1256.4 bits: 238.6 E(): 2.8e-61 Smith-Waterman score: 957; 97.959% identity (98.639% similar) in 147 aa overlap (20-166:1-147) 10 20 30 40 50 60 mFLJ00 RPGLRKLQKCVFVMFFPGSMERPLTVLQVSLYHPTQGPVAFAHVPQQLQHDASRLLVGRG :::::::::::::::::: ::::.:: :::::::::::::: gi|116 MERPLTVLQVSLYHPTQGSVAFAQVPPQLQHDASRLLVGRG 10 20 30 40 70 80 90 100 110 120 mFLJ00 QNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLTRKSCVWVNGLPLRYLEQVPLGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 QNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLTRKSCVWVNGLPLRYLEQVPLGT 50 60 70 80 90 100 130 140 150 160 mFLJ00 INRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYRPKAQETDE :::::::::::::::::::::::::::::::::::::::::::::: gi|116 INRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYRPKAQETDE 110 120 130 140 >>gi|81882601|sp|Q5BK67.1|TIFAB_RAT RecName: Full=TRAF-i (147 aa) initn: 921 init1: 921 opt: 921 Z-score: 1209.4 bits: 229.9 E(): 1.2e-58 Smith-Waterman score: 921; 91.837% identity (97.959% similar) in 147 aa overlap (20-166:1-147) 10 20 30 40 50 60 mFLJ00 RPGLRKLQKCVFVMFFPGSMERPLTVLQVSLYHPTQGPVAFAHVPQQLQHDASRLLVGRG :::::::::::::::::::::::.:: :::::::::::::: gi|818 MERPLTVLQVSLYHPTQGPVAFAKVPLQLQHDASRLLVGRG 10 20 30 40 70 80 90 100 110 120 mFLJ00 QNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLTRKSCVWVNGLPLRYLEQVPLGT :.::::::::::::.:: :::::::::.:::::::::::.:::::::::::::::::: . gi|818 QDTHLQLQLPQLSRHHLCLEPYLEKGSNLLAFCLKVLTRQSCVWVNGLPLRYLEQVPLHS 50 60 70 80 90 100 130 140 150 160 mFLJ00 INRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYRPKAQETDE .:::::::::::.:::::::::.::::::::::::::::::::::: gi|818 VNRISFSGIQMLIRKEGGASLEAFVCYFHLSPSPLIYRPKAQETDE 110 120 130 140 >>gi|114602074|ref|XP_527016.2| PREDICTED: similar to FL (482 aa) initn: 815 init1: 815 opt: 820 Z-score: 1070.4 bits: 205.9 E(): 6.5e-51 Smith-Waterman score: 820; 74.691% identity (91.358% similar) in 162 aa overlap (5-166:308-468) 10 20 30 mFLJ00 RPGLRKLQKCVFVMFFPGSMERPLTVLQVSLYHP : .:.... .:::.:::::.:::::: gi|114 AIKLSGPWRSIRALPALPKPAYSLSRAHSCRTRARCALAIR-TSSMEKPLTVLRVSLYHP 280 290 300 310 320 330 40 50 60 70 80 90 mFLJ00 TQGPVAFAHVPQQLQHDASRLLVGRGQNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCL : :: :::.:: .::::.: ::.::::..:::::::.::: ::::::::::::.:::::: gi|114 TLGPSAFANVPPRLQHDTSPLLLGRGQDAHLQLQLPHLSRRHLSLEPYLEKGSALLAFCL 340 350 360 370 380 390 100 110 120 130 140 150 mFLJ00 KVLTRKSCVWVNGLPLRYLEQVPLGTINRISFSGIQMLVRKEGGASLETFVCYFHLSPSP :.:.::.::::::: :::::::::.:.::.:::::::::: : :.:::.::::::.:::: gi|114 KALSRKGCVWVNGLTLRYLEQVPLSTVNRVSFSGIQMLVRVEEGTSLEAFVCYFHVSPSP 400 410 420 430 440 450 160 mFLJ00 LIYRPKAQETDE :::::.:.:::: gi|114 LIYRPEAEETDEWEGISQEQPPPGSG 460 470 480 >>gi|34526521|dbj|BAC85138.1| FLJ00292 protein [Homo sap (194 aa) initn: 815 init1: 815 opt: 815 Z-score: 1069.4 bits: 204.4 E(): 7.3e-51 Smith-Waterman score: 815; 80.405% identity (94.595% similar) in 148 aa overlap (19-166:33-180) 10 20 30 40 mFLJ00 RPGLRKLQKCVFVMFFPGSMERPLTVLQVSLYHPTQGPVAFAHVPQQL :::.:::::.::::::: :: :::.:: .: gi|345 LPALPKPAYSLSRAHSCRTRARCAPAIRTSSMEKPLTVLRVSLYHPTLGPSAFANVPPRL 10 20 30 40 50 60 50 60 70 80 90 100 mFLJ00 QHDASRLLVGRGQNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLTRKSCVWVNGL :::.: ::.::::..:::::::.::: ::::::::::::.:::::::.:.::.::::::: gi|345 QHDTSPLLLGRGQDAHLQLQLPRLSRRHLSLEPYLEKGSALLAFCLKALSRKGCVWVNGL 70 80 90 100 110 120 110 120 130 140 150 160 mFLJ00 PLRYLEQVPLGTINRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYRPKAQETDE :::::::::.:.::.:::::::::: : :.:::.::::::.:::::::::.:.:::: gi|345 TLRYLEQVPLSTVNRVSFSGIQMLVRVEEGTSLEAFVCYFHVSPSPLIYRPEAEETDEWE 130 140 150 160 170 180 gi|345 GISQGQPPPGSG 190 >>gi|172046187|sp|Q6ZNK6.2|TIFAB_HUMAN RecName: Full=TRA (161 aa) initn: 810 init1: 810 opt: 810 Z-score: 1064.0 bits: 203.2 E(): 1.5e-50 Smith-Waterman score: 810; 80.272% identity (94.558% similar) in 147 aa overlap (20-166:1-147) 10 20 30 40 50 60 mFLJ00 RPGLRKLQKCVFVMFFPGSMERPLTVLQVSLYHPTQGPVAFAHVPQQLQHDASRLLVGRG ::.:::::.::::::: :: :::.:: .::::.: ::.::: gi|172 MEKPLTVLRVSLYHPTLGPSAFANVPPRLQHDTSPLLLGRG 10 20 30 40 70 80 90 100 110 120 mFLJ00 QNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLTRKSCVWVNGLPLRYLEQVPLGT :..:::::::.::: ::::::::::::.:::::::.:.::.::::::: :::::::::.: gi|172 QDAHLQLQLPRLSRRHLSLEPYLEKGSALLAFCLKALSRKGCVWVNGLTLRYLEQVPLST 50 60 70 80 90 100 130 140 150 160 mFLJ00 INRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYRPKAQETDE .::.:::::::::: : :.:::.::::::.:::::::::.:.:::: gi|172 VNRVSFSGIQMLVRVEEGTSLEAFVCYFHVSPSPLIYRPEAEETDEWEGISQGQPPPGSG 110 120 130 140 150 160 >>gi|119582619|gb|EAW62215.1| hCG1980385, isoform CRA_a (777 aa) initn: 815 init1: 815 opt: 815 Z-score: 1061.0 bits: 204.9 E(): 2.2e-50 Smith-Waterman score: 815; 80.405% identity (94.595% similar) in 148 aa overlap (19-166:312-459) 10 20 30 40 mFLJ00 RPGLRKLQKCVFVMFFPGSMERPLTVLQVSLYHPTQGPVAFAHVPQQL :::.:::::.::::::: :: :::.:: .: gi|119 KRHISLNIRFRMKTHVCKAYVKHVMHERTSSMEKPLTVLRVSLYHPTLGPSAFANVPPRL 290 300 310 320 330 340 50 60 70 80 90 100 mFLJ00 QHDASRLLVGRGQNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLTRKSCVWVNGL :::.: ::.::::..:::::::.::: ::::::::::::.:::::::.:.::.::::::: gi|119 QHDTSPLLLGRGQDAHLQLQLPRLSRRHLSLEPYLEKGSALLAFCLKALSRKGCVWVNGL 350 360 370 380 390 400 110 120 130 140 150 160 mFLJ00 PLRYLEQVPLGTINRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYRPKAQETDE :::::::::.:.::.:::::::::: : :.:::.::::::.:::::::::.:.:::: gi|119 TLRYLEQVPLSTVNRVSFSGIQMLVRVEEGTSLEAFVCYFHVSPSPLIYRPEAEETDEWE 410 420 430 440 450 460 gi|119 GISQGQPPPGSGCQQFLFSAQKDDRFAPRASYKEVQLHSQALSIFSIRKTEGFSCSHGPG 470 480 490 500 510 520 >>gi|109078832|ref|XP_001105096.1| PREDICTED: hypothetic (282 aa) initn: 806 init1: 806 opt: 810 Z-score: 1060.6 bits: 203.3 E(): 2.3e-50 Smith-Waterman score: 810; 74.684% identity (91.772% similar) in 158 aa overlap (9-166:69-225) 10 20 30 mFLJ00 RPGLRKLQKCVFVMFFPGSMERPLTVLQVSLYHPTQGP .:.... :.:::.:::.::::::::: :: gi|109 LRPSGKCHVAYTLPKPAYSLPRAHSCRTRVRCALAIR-PSSMEKPLTILQVSLYHPTLGP 40 50 60 70 80 90 40 50 60 70 80 90 mFLJ00 VAFAHVPQQLQHDASRLLVGRGQNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLT :::.:: .::::.: ::.::::..:::::::.::: ::::::::::::..::::::::. gi|109 SAFANVPPRLQHDTSPLLLGRGQDAHLQLQLPHLSRRHLSLEPYLEKGSAMLAFCLKVLS 100 110 120 130 140 150 100 110 120 130 140 150 mFLJ00 RKSCVWVNGLPLRYLEQVPLGTINRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYR ::.::::::: ::::::: :. .::. ::::::::: : :.:::.::::::.:::::::: gi|109 RKGCVWVNGLTLRYLEQVTLSPVNRLFFSGIQMLVRVEEGTSLEAFVCYFHVSPSPLIYR 160 170 180 190 200 210 160 mFLJ00 PKAQETDE :.:.:::: gi|109 PEAEETDEWEGISQEQPPPGSGQQTSGCLGFLHGPSQTWDSPPQPRPGGGTEIQLQREPP 220 230 240 250 260 270 >>gi|194219911|ref|XP_001917929.1| PREDICTED: similar to (204 aa) initn: 774 init1: 774 opt: 774 Z-score: 1015.6 bits: 194.6 E(): 7.3e-48 Smith-Waterman score: 774; 74.830% identity (95.238% similar) in 147 aa overlap (20-166:1-147) 10 20 30 40 50 60 mFLJ00 RPGLRKLQKCVFVMFFPGSMERPLTVLQVSLYHPTQGPVAFAHVPQQLQHDASRLLVGRG ::::::::.:::.::::::.::..:: :::::.: :::::: gi|194 MERPLTVLRVSLHHPTQGPAAFTNVPLQLQHDTSPLLVGRG 10 20 30 40 70 80 90 100 110 120 mFLJ00 QNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLTRKSCVWVNGLPLRYLEQVPLGT ...:.::.::.::: ::::::: ::::.::.::::.:.:..::::::: ::.::::::.: gi|194 RDAHIQLRLPNLSRRHLSLEPYREKGSALLVFCLKALSRRGCVWVNGLTLRFLEQVPLST 50 60 70 80 90 100 130 140 150 160 mFLJ00 INRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYRPKAQETDE .::..:.::::.:. :::.:::.::: ::::::::::::.:.:::: gi|194 VNRVTFAGIQMVVHVEGGTSLEAFVCCFHLSPSPLIYRPQAEETDEWESIPQEQPPPGSG 110 120 130 140 150 160 gi|194 ERALGHLGFLHGPSQIQDDPPQPSPGGGTEIQFQREPPDSLLC 170 180 190 200 166 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 04:39:38 2009 done: Fri Mar 13 04:43:55 2009 Total Scan time: 619.290 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]