FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mFLJ00234.ptfa, 471 aa
 vs ./tmplib.26680 library

1768546 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.4823+/-0.00366; mu= 19.3269+/- 0.245
 mean_var=63.2650+/-14.233, 0's: 0 Z-trim: 4  B-trim: 0 in 0/36
 Lambda= 0.1612

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0736  ( 747 res)   mbh04144                   ( 747)  126   39  0.0017


>>mKIAA0736  ( 747 res)   mbh04144                        (747 aa)
 initn:  79 init1:  54 opt: 126  Z-score: 155.1  bits: 38.7 E(): 0.0017
Smith-Waterman score: 126;  24.204% identity (26.761% ungapped) in 157 aa overlap (105-255:219-366)

           80        90       100       110       120       130    
mFLJ00 RENCGNQSADPLMKEVETLTSHWTLYMNVGGFLVGLFWSTLLGAWSDRVGRRPLLVLASL
                                     :..:: :   : :. .::.:::  :...  
mKIAA0 FVVGFVLPSAEKDMCLSDSNKGMLGLIVYLGMMVGAF---LWGGLADRLGRRQCLLIS--
      190       200       210       220          230       240     

          140       150       160       170       180       190    
mFLJ00 GLLLQAVVSIFVVQLELHVGFFVLGRALCALLGDFNGLLAASFASVADVSSNHSRTFRMA
        : ...: ..:   .. . : :.. : : ..   ..: .   :.  ..  ....:  ...
mKIAA0 -LSVNSVFAFFSSFVQGY-GTFLFCRLLSGV--GIGGSIPIVFSYFSEFLAQEKRGEHLS
            250       260        270         280       290         

          200       210             220       230       240        
mFLJ00 LLEACIGVAGTLASLLG----GH--WLRAQGYANPFWLALALLIVMALYAAFCFGETVKE
        :     ..:. :. ..     :  :   .: :  :    ....: :. ..: .:  . .
mKIAA0 WLCMFWMIGGVYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVLVCAFPSVFAIGALTTQ
     300       310       320       330       340       350         

      250       260       270       280       290       300        
mFLJ00 PKSTRLFTLRHHRSIARLYVVPAPEKSRMHLALYSLAIFVVVTVHFGAQDILTLYELSAP
       :.: :.:                                                     
mKIAA0 PESPRFFLENGKHDEAWMVLKQVHDTNMRAKGHPERVFSVTHIKTIHQEDELIEIQSDTG
     360       370       380       390       400       410         




471 residues in 1 query   sequences
1768546 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:08:24 2006 done: Mon Mar 27 10:08:24 2006
 Scan time:  0.660 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]