FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mFLJ00237.ptfa, 643 aa
 vs ./tmplib.26680 library

1768374 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 8.8323+/-0.00627; mu= -4.1890+/- 0.415
 mean_var=222.1575+/-53.787, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.0860

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0821  ( 1406 res)   mbg08158                  (1406)  648   94 1.3e-19


>>mKIAA0821  ( 1406 res)   mbg08158                       (1406 aa)
 initn: 618 init1: 327 opt: 648  Z-score: 444.6  bits: 93.6 E(): 1.3e-19
Smith-Waterman score: 648;  40.152% identity (42.570% ungapped) in 264 aa overlap (386-641:75-331)

         360       370       380       390       400       410     
mFLJ00 STTTPSPITTPWPTEPPLHPEVPSQGREDSCEGTLRAVDPPVKHHSYGRHEGAWMKDPAA
                                     : :::. :  :.. :   .. ::: :::  
mKIAA0 VAGSDAFPDPCPGTYKYLEVQYDCVPYIFVCPGTLQKVLEPTSTHESEHQSGAWCKDPLQ
           50        60        70        80        90       100    

         420         430       440       450       460       470   
mFLJ00 LDDRIYVTNY--YYGNSLVEFRNLENFKQGRWSNMYKLPYNWIGTGHVVYQGAFYYNRAF
         :::::  .  :  ..:.:. . :..  .: .. :.::    ::: :::.:: .::.  
mKIAA0 AGDRIYVMPWIPYRTDTLTEYASWEDYVAARHTTTYRLPNRVDGTGFVVYDGAVFYNKER
          110       120       130       140       150       160    

           480       490       500       510       520       530   
mFLJ00 TKNIIKYDLRQRFVASWALLPDVVYEDTTPWKWRGHSDIDFAVDESGLWVIYPAVDEHDE
       :.::.::::: :. .. ...  . :.::.:..: :..:::.::::.:::::: .     :
mKIAA0 TRNIVKYDLRTRIKSGETVINTANYHDTSPYRWGGKTDIDLAVDENGLWVIYAT-----E
          170       180       190       200       210              

           540       550       560       570            580        
mFLJ00 TQHEVIVLSRLDPADLSVHRETTWKTRLRRNSYGNCFLVCGILYT-----VDTYNQHEG-
        ..  .:.:.:.:  :    : ::.:   . : .: :.:::.::.     ::  ..  : 
mKIAA0 GNNGRLVVSQLNPYTLRF--EGTWETGYDKRSASNAFMVCGVLYVLRSVYVDDDSEAAGN
     220       230         240       250       260       270       

       590       600       610       620       630       640       
mFLJ00 QVAYAFDTHTGTDAHPQLPFLNEYSYTTQVDYNPKERVLYAWDNGHQLTYTLHFVV    
       .: :::.:... .   .: : : :.....:::::..  ::.:.:   . :.:.:      
mKIAA0 RVDYAFNTNANREEPVSLAFPNPYQFVSSVDYNPRDNQLYVWNNYFVVRYSLEFGPPDPS
       280       290       300       310       320       330       

mKIAA0 AGPATSPPLSTTTTARPTPLTSTASPAATTPLRRAPLTTHPVGAINQLGPDLPPATAPAP
       340       350       360       370       380       390       




643 residues in 1 query   sequences
1768374 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:08:26 2006 done: Mon Mar 27 10:08:27 2006
 Scan time:  0.810 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]