FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1607.ptfa, 355 aa vs ./tmplib.26680 library 1768662 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 3.8866+/-0.00433; mu= 19.3334+/- 0.292 mean_var=92.0375+/-20.511, 0's: 0 Z-trim: 13 B-trim: 0 in 0/36 Lambda= 0.1337 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0993 ( 646 res) mbg00079 ( 646) 906 185 1.2e-47 mKIAA0449 ( 171 res) mfj00177 ( 171) 158 40 0.00016 mKIAA1708 ( 1291 res) mbg16135 (1291) 159 41 0.00039 mFLJ00182 ( 693 res) mbh00056 ( 693) 150 39 0.00094 mKIAA0540 ( 1539 res) mbg09815 (1539) 148 39 0.0019 mKIAA4167 ( 342 res) mpj04828 ( 342) 140 37 0.0025 mKIAA1435 ( 411 res) mbp03169 ( 411) 135 36 0.0053 >>mKIAA0993 ( 646 res) mbg00079 (646 aa) initn: 1032 init1: 874 opt: 906 Z-score: 948.0 bits: 184.8 E(): 1.2e-47 Smith-Waterman score: 941; 46.316% identity (49.624% ungapped) in 285 aa overlap (11-293:113-380) 10 20 30 mKIAA1 GKDASTPVGLPGHSQS--FLHSLPALRPSQVTVKDMYLFS :: ... :.: : :::: . ::.. mKIAA0 QIPKQLFKKPHPPKRVRSRLNGDNIGISVPPGATSDKIFFHHLDNLRPSLTPVKEL---- 90 100 110 120 130 40 50 60 70 80 90 mKIAA1 LGSESPKGAIGHIVPTEKSILAVEKNKLLMPPLWNRTFSWGFDDFSCCLGSYGSDKILMT : .:.:: :.:.:::::.::.:.:: ::.::.::. :.:: ::.: ::: . . mKIAA0 ------KEPVGQIVCTDKGILAVEQNKVLIPPAWNKTFAWGYADLSCRLGTYESDKAVTV 140 150 160 170 180 190 100 110 120 130 140 150 mKIAA1 FENLAAWGPCLCAVCPSPTMIVTSGASAVVCIWELSLVKGRPRGLKLRQALYGHTQAVTC .: :. :: ::::::.: ...:.:.:.:::.::.. : . . : :.::: :::..::: mKIAA0 YECLSEWGQILCAVCPNPKLVITGGTSTVVCVWEMGTSKEKAKPLTLKQALLGHTDTVTC 200 210 220 230 240 250 160 170 180 190 200 210 mKIAA1 LTASVTFSLLVSGSQDRTCILWDLDHLSRVACLPVHREGISAIAISDVSGTIVSCAGAHL :::... ..::::.:::::.:::..:: .. : :: .::. :....: ::::::... mKIAA0 ATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSCAGTYI 260 270 280 290 300 310 220 230 240 250 260 270 mKIAA1 SLWNVNGQPLASITTAWGPEGTITCCCIVEGPAWDASHVIITGSKDGMVRIWKTEDVKMP .:..::.:..:..: : :.:::. : ::...::.:: .::.::.:. : ...: mKIAA0 HVWSINGNPIVSVNTFTGRSQQIVCCCMSEMNEWDTQNVIVTGHSDGVVRFWRMEFLQVP 320 330 340 350 360 370 280 290 300 310 320 330 mKIAA1 VPRQAVMEEPSTEPLSPRGHKWAKNLALSRELDVSVALSGKPSKASPAVTALAITRNQSK : :. ::. mKIAA0 -------ETPAPEPVEDLEMQEGCPEAQIGQQAQDDDSSDSETEEPSVSQDPKDTSSQPS 380 390 400 410 420 >>mKIAA0449 ( 171 res) mfj00177 (171 aa) initn: 65 init1: 65 opt: 158 Z-score: 173.7 bits: 39.6 E(): 0.00016 Smith-Waterman score: 158; 27.211% identity (31.008% ungapped) in 147 aa overlap (152-292:37-171) 130 140 150 160 170 180 mKIAA1 SGASAVVCIWELSLVKGRPRGLKLRQALYGHTQAVTCLTASVTFSLLVSGSQDRTCILWD : ... :: .. ..: :::.: :: mKIAA0 TGSKDHYVKMFQLGDCVTGTIGPTHNFEPPHYDGIECL--AIQGDILFSGSRDNGIKKWD 10 20 30 40 50 60 190 200 210 220 230 mKIAA1 LDHLSRVACLP-VHREGISAIAISDVSGTIVS-CAGAHLSLWNV-NGQPLASITTAWGPE ::. . .: .:.. . :.:. ..: : .. ...::: : :.. : : . mKIAA0 LDQQELIQQIPNAHKDWVCALAFVPGRPMLLSACRAGFIKVWNVDNFTPIGEIK---GHD 70 80 90 100 110 120 240 250 260 270 280 290 mKIAA1 GTITCCCIVEGPAWDASHVIITGSKDGMVRIWKTEDVKMP-VPRQ--AVMEEPSTEPLSP . :. : ...: :.:.:.: :..:. : .::. :. . .: : mKIAA0 SPINAICT------NSKH-IFTASSDCRVKLWNYVPGLTPCLPRRVLAIKGRATTLP 130 140 150 160 170 300 310 320 330 340 350 mKIAA1 RGHKWAKNLALSRELDVSVALSGKPSKASPAVTALAITRNQSKLLVGDEKGRIFCWSADG >>mKIAA1708 ( 1291 res) mbg16135 (1291 aa) initn: 225 init1: 122 opt: 159 Z-score: 166.6 bits: 41.2 E(): 0.00039 Smith-Waterman score: 159; 28.409% identity (29.412% ungapped) in 88 aa overlap (137-223:947-1032) 110 120 130 140 150 160 mKIAA1 PCLCAVCPSPTMIVTSGASAVVCIWELSLVKG-RPRGLKLRQALYGHTQAVTCLTASVTF :: : :. . :::.:: :. . : mKIAA1 TPSVQQDKSDESDSSLSEVHRGIINPFPACKGVRASPLQCVHIAEGHTKAVLCVDS--TD 920 930 940 950 960 970 170 180 190 200 210 220 mKIAA1 SLLVSGSQDRTCILWDLDHLSRVACLPVHREGISAIAISDVSGTIVSCAGAHLSLWNVNG .:: .::.:::: .:.: ... : :: ... .. . .. . . . .....:.. mKIAA1 DLLFTGSKDRTCKVWNLVTGQEIMSLGVHPNNVVSVKYCNYTSLVFTVSTSYIKVWDIRE 980 990 1000 1010 1020 1030 230 240 250 260 270 280 mKIAA1 QPLASITTAWGPEGTITCCCIVEGPAWDASHVIITGSKDGMVRIWKTEDVKMPVPRQAVM mKIAA1 SAKCIRTLTSSGQVTLGEACSASTSRTVAIPSGESQINQIALNPTGTFLYAASGNAVRMW 1040 1050 1060 1070 1080 1090 >>mFLJ00182 ( 693 res) mbh00056 (693 aa) initn: 141 init1: 105 opt: 150 Z-score: 159.7 bits: 39.0 E(): 0.00094 Smith-Waterman score: 150; 27.692% identity (31.034% ungapped) in 130 aa overlap (147-268:560-683) 120 130 140 150 160 170 mKIAA1 TMIVTSGASAVVCIWELSLVKGRPRGLKLRQALYGHTQAVTCLTASVTFSLLVSGSQDRT :.. ::: :: :..: . ....:::.::: mFLJ00 GLSGNWLAYWQYEIGVSQQDAHFHFHQIRLQSFPGHTGAVKCVAALSSEDFFLSGSKDRT 530 540 550 560 570 580 180 190 200 210 220 mKIAA1 CILWDL----DHLSRVACLPV---HREGISAIAISDVSGTIVSCAGAHLSLWN-VNGQPL :: : : ...: . ::... .. .. .::: :: . .:. .:. : mFLJ00 VRLWPLYNYGDGTNETASRLIYAQHRKSVFYVGQLEAPQYVVSCDGA-VHVWDPFTGKTL 590 600 610 620 630 640 230 240 250 260 270 280 mKIAA1 ASITTAWGPEGTITCCCIVEGPAWDASHVIITGSKDGMVRIWKTEDVKMPVPRQAVMEEP .. . .. . .. :: .: : .:.:. .:. mFLJ00 RTVDPS---DSRVPLTAVAVMPAPHTS--ITMASSDSTLRFVDCRKPGLQ 650 660 670 680 690 290 300 310 320 330 340 mKIAA1 STEPLSPRGHKWAKNLALSRELDVSVALSGKPSKASPAVTALAITRNQSKLLVGDEKGRI >>mKIAA0540 ( 1539 res) mbg09815 (1539 aa) initn: 109 init1: 109 opt: 148 Z-score: 154.4 bits: 39.2 E(): 0.0019 Smith-Waterman score: 180; 26.829% identity (30.315% ungapped) in 287 aa overlap (26-289:1209-1485) 10 20 30 40 50 mKIAA1 GKDASTPVGLPGHSQSFLHSLPALRPSQVTVKDMYLFS----LGSESPKGAIGHI : . ...... :: .:: . . .. mKIAA0 RQSHSFITQSSSDMLVTVSASGLLGTHTWLPYDRNINNYFTFSKDPTMGSPKVQKLLSGP 1180 1190 1200 1210 1220 1230 60 70 80 90 100 110 mKIAA1 VPTEKSILAVEKNKLLMPPLWNRTFSWGFDDFSCCLGSYGSDKILMTFENLAAWGPCLCA ..... : . : . : . :: : : : . : ..: . :: mKIAA0 WVSDSGVSA---QALAVAPDGKLLFSGGHWDGSLRVTSLPRGRLLNQLSRHLDIVTCLAL 1240 1250 1260 1270 1280 1290 120 130 140 150 160 mKIAA1 -VCPSPTMIVTSGASAVVC-IWELSLVKGRPRGL--KLRQALYGHTQAVTCLTASVTFSL .: . . ::. ..: .:.: .: :: : :.::::. ::.:.. :. ... mKIAA0 DTCG---IYLISGSRDTTCMVWRLLQQSGLSAGLAPKPVQVLYGHVAAVSCVAISTELDM 1300 1310 1320 1330 1340 1350 170 180 190 200 210 mKIAA1 LVSGSQDRTCILWDLDHLSRVACL-P--VHREG-ISAIAISDVSGTIV----SCA--GAH ::::.: : :. . . . :: : : . : :: .:.. . : :: .: ::. mKIAA0 AVSGSEDGTVIIHTVRRGQFVAALRPPGATLPGPISHLALG-AEGQIVVQSSACERPGAQ 1360 1370 1380 1390 1400 1410 220 230 240 250 260 270 mKIAA1 ----LSLWNVNGQPLASITTAWGPEG-TITCCCIVEGPAWDASHVIITGSKDGMVRIWKT : :..:::. ::.: . : . :.. .. : : . :.. .. : mKIAA0 VTYSLHLYSVNGRLRASVTLTEQPTALTVAEDFVLLGTAQCSLHILHLNKLRPAV---PP 1420 1430 1440 1450 1460 280 290 300 310 320 330 mKIAA1 EDVKMPVPRQAVMEEPSTEPLSPRGHKWAKNLALSRELDVSVALSGKPSKASPAVTALAI .:.:: .: .: : mKIAA0 LPMKVPVHSVSVTKERSHVLVGLEDGKLIVVGAGQPSEVRSSQFARRLWRSSRRISQVSS 1470 1480 1490 1500 1510 1520 >>mKIAA4167 ( 342 res) mpj04828 (342 aa) initn: 195 init1: 106 opt: 140 Z-score: 152.1 bits: 36.6 E(): 0.0025 Smith-Waterman score: 185; 26.415% identity (29.577% ungapped) in 159 aa overlap (114-270:63-206) 90 100 110 120 130 140 mKIAA1 SCCLGSYGSDKILMTFENLAAWGPCLCAVCPSPTMIVTSGASAVVCIWELSLVKGRPRGL :. ...:.:.:.. :: : : mKIAA4 RREEEPQKPNYALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIW------GAYDG- 40 50 60 70 80 150 160 170 180 190 200 mKIAA1 KLRQALYGHTQAVTCLTASVTFSLLVSGSQDRTCILWDLDHLSRVACLPVHREGISAIAI . ...::::. .. .. : : :::.:.:.: .::. . . : : . . . mKIAA4 NCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDF 90 100 110 120 130 140 210 220 230 240 250 260 mKIAA1 SDVSGTIVSCA-GAHLSLWNVN-GQPLASITTAWGPEGTITCCCIVEGPAWDASHVIITG . :. ::: . ...:.:. :. : .... : .... : . .:..: mKIAA4 NPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNC--------NGSLIVSG 150 160 170 180 190 270 280 290 300 310 320 mKIAA1 SKDGMVRIWKTEDVKMPVPRQAVMEEPSTEPLSPRGHKWAKNLALSRELDVSVALSGKPS : ::. ::: mKIAA4 SYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCL 200 210 220 230 240 250 >>mKIAA1435 ( 411 res) mbp03169 (411 aa) initn: 145 init1: 87 opt: 135 Z-score: 146.2 bits: 35.8 E(): 0.0053 Smith-Waterman score: 135; 25.263% identity (25.806% ungapped) in 95 aa overlap (132-224:179-273) 110 120 130 140 150 160 mKIAA1 LAAWGPCLCAVCPSPTMIVTSGASAVVCIWELSLVKGRPRGLKLRQALYGHTQAVTCLTA ...:.: . .. .: :: ...:: mKIAA1 MLGRHFFSSWASCLQYDLDTQHAFVGDYSGQITLLKLEQNTCSVITTLKGHEGSIACLWW 150 160 170 180 190 200 170 180 190 200 210 mKIAA1 SVTFSLLVSGSQDRTCILWDLD-HLSRVACLPVHREGISAIAISDVSGTIVSC-AGAHLS . :: ::..: . :.::. . .:. : :.. .... ... .::: : . .. mKIAA1 DPIQRLLFSGASDNSVIMWDIGGRKGRTLLLQGHHDRVQSLCYLQLTRQLVSCSADGGIA 210 220 230 240 250 260 220 230 240 250 260 270 mKIAA1 LWNVNGQPLASITTAWGPEGTITCCCIVEGPAWDASHVIITGSKDGMVRIWKTEDVKMPV .::.. mKIAA1 VWNMDVSREEAPQWLESDSCQKCEQPFFWNIKQMWDTKTLGLRQHHCRKCGQAVCGKCSS 270 280 290 300 310 320 355 residues in 1 query sequences 1768662 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:49:24 2006 done: Mon Mar 27 10:49:25 2006 Scan time: 0.590 Display time: 0.070 Function used was FASTA [version 3.4t11 Apr 17, 2002]