# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/msk08063.fasta.nr -Q ../query/mFLJ00210.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
mFLJ00210, 188 aa
vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library
2727779818 residues in 7921681 sequences
statistics sampled from 60000 to 7905071 sequences
Expectation_n fit: rho(ln(x))= 6.8790+/-0.000206; mu= 0.7957+/- 0.011
mean_var=135.3923+/-25.988, 0's: 39 Z-trim: 68 B-trim: 80 in 1/66
Lambda= 0.110224
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 36, opt: 24, open/ext: -10/-2, width: 16
The best scores are: opt bits E(7921681)
gi|20071573|gb|AAH26475.1| NO80 complex subunit E ( 205) 1298 216.5 2e-54
gi|148685511|gb|EDL17458.1| coiled-coil domain con ( 340) 1298 216.7 3e-54
gi|149067815|gb|EDM17367.1| similar to hypothetica ( 205) 1286 214.6 7.6e-54
gi|81884598|sp|Q6AYH2.1|IN80E_RAT RecName: Full=IN ( 244) 1286 214.7 8.6e-54
gi|73958467|ref|XP_858555.1| PREDICTED: similar to ( 230) 1219 204.0 1.3e-50
gi|73958465|ref|XP_547064.2| PREDICTED: similar to ( 244) 1219 204.0 1.4e-50
gi|149725770|ref|XP_001501840.1| PREDICTED: simila ( 244) 1218 203.9 1.6e-50
gi|109128122|ref|XP_001107210.1| PREDICTED: simila ( 244) 1216 203.5 1.9e-50
gi|114661928|ref|XP_001147129.1| PREDICTED: hypoth ( 244) 1211 202.8 3.4e-50
gi|97046498|sp|Q29RS4.1|IN80E_BOVIN RecName: Full= ( 244) 1207 202.1 5.2e-50
gi|74730149|sp|Q8NBZ0.1|IN80E_HUMAN RecName: Full= ( 244) 1200 201.0 1.1e-49
gi|126335530|ref|XP_001364052.1| PREDICTED: hypoth ( 245) 1139 191.3 9.4e-47
gi|149417830|ref|XP_001521309.1| PREDICTED: hypoth ( 217) 1102 185.4 5.1e-45
gi|148685513|gb|EDL17460.1| coiled-coil domain con ( 144) 1012 170.9 7.6e-41
gi|149067813|gb|EDM17365.1| similar to hypothetica ( 144) 1000 169.0 2.8e-40
gi|148685515|gb|EDL17462.1| coiled-coil domain con ( 163) 927 157.4 9.7e-37
gi|149067807|gb|EDM17359.1| similar to hypothetica ( 163) 915 155.5 3.7e-36
gi|73958471|ref|XP_858644.1| PREDICTED: similar to ( 194) 753 129.8 2.4e-28
gi|114661932|ref|XP_001146930.1| PREDICTED: hypoth ( 195) 750 129.4 3.3e-28
gi|119600363|gb|EAW79957.1| hypothetical protein F ( 188) 731 126.3 2.6e-27
gi|119600360|gb|EAW79954.1| hypothetical protein F ( 193) 730 126.2 3e-27
gi|148685514|gb|EDL17461.1| coiled-coil domain con ( 205) 561 99.3 3.8e-19
gi|148685512|gb|EDL17459.1| coiled-coil domain con ( 105) 536 95.1 3.6e-18
gi|149067809|gb|EDM17361.1| similar to hypothetica ( 105) 534 94.8 4.5e-18
gi|109128124|ref|XP_001107089.1| PREDICTED: simila ( 205) 508 90.9 1.3e-16
gi|114661934|ref|XP_001147002.1| PREDICTED: hypoth ( 205) 508 90.9 1.3e-16
gi|33417050|gb|AAH55928.1| Ino80e protein [Mus mus ( 138) 505 90.3 1.4e-16
gi|119600364|gb|EAW79958.1| hypothetical protein F ( 163) 503 90.0 1.9e-16
gi|73958469|ref|XP_849376.1| PREDICTED: similar to ( 205) 502 89.9 2.6e-16
gi|152001055|gb|AAI48161.1| INO80E protein [Bos ta ( 205) 501 89.8 2.9e-16
gi|149067805|gb|EDM17357.1| similar to hypothetica ( 140) 497 89.0 3.3e-16
gi|37779148|gb|AAO86733.1| LP9167 protein [Homo sa ( 137) 484 86.9 1.4e-15
gi|18676622|dbj|BAB84963.1| FLJ00210 protein [Homo ( 161) 484 87.0 1.6e-15
gi|18676414|dbj|BAB84859.1| FLJ00079 protein [Homo ( 84) 477 85.7 2e-15
gi|73970558|ref|XP_860832.1| PREDICTED: hypothetic ( 87) 383 70.7 6.6e-11
gi|34785899|gb|AAH57737.1| MGC68961 protein [Xenop ( 628) 249 50.1 0.00077
gi|220726449|gb|EED80398.1| predicted protein [Pos ( 476) 238 48.3 0.0021
gi|530878|gb|AAB53954.1| amino acid feature: N-gly ( 351) 228 46.6 0.005
gi|149411675|ref|XP_001508405.1| PREDICTED: simila ( 466) 229 46.8 0.0056
gi|40807074|gb|AAH65338.1| Zgc:77312 [Danio rerio] ( 231) 219 45.0 0.0099
>>gi|20071573|gb|AAH26475.1| NO80 complex subunit E [Mus (205 aa)
initn: 1298 init1: 1298 opt: 1298 Z-score: 1133.4 bits: 216.5 E(): 2e-54
Smith-Waterman score: 1298; 100.000% identity (100.000% similar) in 188 aa overlap (1-188:18-205)
10 20 30 40
mFLJ00 LLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRKRSP
:::::::::::::::::::::::::::::::::::::::::::
gi|200 MGIPTLLPTCLSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRKRSP
10 20 30 40 50 60
50 60 70 80 90 100
mFLJ00 PMGGVPSPSSLSLPPSTGFPLQTSGAPSPYLSSLASPPYPPFPSDYLALQLPEPSPLRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|200 PMGGVPSPSSLSLPPSTGFPLQTSGAPSPYLSSLASPPYPPFPSDYLALQLPEPSPLRPK
70 80 90 100 110 120
110 120 130 140 150 160
mFLJ00 LEKRPRLPRKLKMSVGPPDCPVGGPLAFPARGSGASVGAALTPLPPPKMPPHTILSTVPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|200 LEKRPRLPRKLKMSVGPPDCPVGGPLAFPARGSGASVGAALTPLPPPKMPPHTILSTVPQ
130 140 150 160 170 180
170 180
mFLJ00 QMFSDAGSGDDALDGDDDLVIDIPE
:::::::::::::::::::::::::
gi|200 QMFSDAGSGDDALDGDDDLVIDIPE
190 200
>>gi|148685511|gb|EDL17458.1| coiled-coil domain contain (340 aa)
initn: 1298 init1: 1298 opt: 1298 Z-score: 1130.4 bits: 216.7 E(): 3e-54
Smith-Waterman score: 1298; 100.000% identity (100.000% similar) in 188 aa overlap (1-188:153-340)
10 20 30
mFLJ00 LLQYENVDEDSSDSDATASSDNSETEGTPK
::::::::::::::::::::::::::::::
gi|148 YEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPK
130 140 150 160 170 180
40 50 60 70 80 90
mFLJ00 LSDTPAPKRKRSPPMGGVPSPSSLSLPPSTGFPLQTSGAPSPYLSSLASPPYPPFPSDYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|148 LSDTPAPKRKRSPPMGGVPSPSSLSLPPSTGFPLQTSGAPSPYLSSLASPPYPPFPSDYL
190 200 210 220 230 240
100 110 120 130 140 150
mFLJ00 ALQLPEPSPLRPKLEKRPRLPRKLKMSVGPPDCPVGGPLAFPARGSGASVGAALTPLPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|148 ALQLPEPSPLRPKLEKRPRLPRKLKMSVGPPDCPVGGPLAFPARGSGASVGAALTPLPPP
250 260 270 280 290 300
160 170 180
mFLJ00 KMPPHTILSTVPQQMFSDAGSGDDALDGDDDLVIDIPE
::::::::::::::::::::::::::::::::::::::
gi|148 KMPPHTILSTVPQQMFSDAGSGDDALDGDDDLVIDIPE
310 320 330 340
>>gi|149067815|gb|EDM17367.1| similar to hypothetical pr (205 aa)
initn: 1286 init1: 1286 opt: 1286 Z-score: 1123.1 bits: 214.6 E(): 7.6e-54
Smith-Waterman score: 1286; 98.404% identity (100.000% similar) in 188 aa overlap (1-188:18-205)
10 20 30 40
mFLJ00 LLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRKRSP
:::::::::::::::::::::::::::::::::::::::::::
gi|149 MGIIILLPTSLSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRKRSP
10 20 30 40 50 60
50 60 70 80 90 100
mFLJ00 PMGGVPSPSSLSLPPSTGFPLQTSGAPSPYLSSLASPPYPPFPSDYLALQLPEPSPLRPK
::::.:::::::::::.:::::::::::::::::::::::::::::::::::::::::::
gi|149 PMGGAPSPSSLSLPPSSGFPLQTSGAPSPYLSSLASPPYPPFPSDYLALQLPEPSPLRPK
70 80 90 100 110 120
110 120 130 140 150 160
mFLJ00 LEKRPRLPRKLKMSVGPPDCPVGGPLAFPARGSGASVGAALTPLPPPKMPPHTILSTVPQ
:::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::
gi|149 LEKRPRLPRKLKMAVGPPDCPVGGPLAFPARGSGASVGAALTPLPPPKMPPHTILSTVPQ
130 140 150 160 170 180
170 180
mFLJ00 QMFSDAGSGDDALDGDDDLVIDIPE
:::::::::::::::::::::::::
gi|149 QMFSDAGSGDDALDGDDDLVIDIPE
190 200
>>gi|81884598|sp|Q6AYH2.1|IN80E_RAT RecName: Full=INO80 (244 aa)
initn: 1286 init1: 1286 opt: 1286 Z-score: 1122.0 bits: 214.7 E(): 8.6e-54
Smith-Waterman score: 1286; 98.404% identity (100.000% similar) in 188 aa overlap (1-188:57-244)
10 20 30
mFLJ00 LLQYENVDEDSSDSDATASSDNSETEGTPK
::::::::::::::::::::::::::::::
gi|818 YEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPK
30 40 50 60 70 80
40 50 60 70 80 90
mFLJ00 LSDTPAPKRKRSPPMGGVPSPSSLSLPPSTGFPLQTSGAPSPYLSSLASPPYPPFPSDYL
:::::::::::::::::.:::::::::::.::::::::::::::::::::::::::::::
gi|818 LSDTPAPKRKRSPPMGGAPSPSSLSLPPSSGFPLQTSGAPSPYLSSLASPPYPPFPSDYL
90 100 110 120 130 140
100 110 120 130 140 150
mFLJ00 ALQLPEPSPLRPKLEKRPRLPRKLKMSVGPPDCPVGGPLAFPARGSGASVGAALTPLPPP
::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::
gi|818 ALQLPEPSPLRPKLEKRPRLPRKLKMAVGPPDCPVGGPLAFPARGSGASVGAALTPLPPP
150 160 170 180 190 200
160 170 180
mFLJ00 KMPPHTILSTVPQQMFSDAGSGDDALDGDDDLVIDIPE
::::::::::::::::::::::::::::::::::::::
gi|818 KMPPHTILSTVPQQMFSDAGSGDDALDGDDDLVIDIPE
210 220 230 240
>>gi|73958467|ref|XP_858555.1| PREDICTED: similar to CG1 (230 aa)
initn: 1219 init1: 1219 opt: 1219 Z-score: 1064.8 bits: 204.0 E(): 1.3e-50
Smith-Waterman score: 1219; 93.085% identity (98.404% similar) in 188 aa overlap (1-188:43-230)
10 20 30
mFLJ00 LLQYENVDEDSSDSDATASSDNSETEGTPK
::::::::::::::::::::::::::::::
gi|739 QEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPK
20 30 40 50 60 70
40 50 60 70 80 90
mFLJ00 LSDTPAPKRKRSPPMGGVPSPSSLSLPPSTGFPLQTSGAPSPYLSSLASPPYPPFPSDYL
::::::::::::::.::.:::::::::::::::::.: ::::::::::::::::::::::
gi|739 LSDTPAPKRKRSPPLGGAPSPSSLSLPPSTGFPLQASTAPSPYLSSLASPPYPPFPSDYL
80 90 100 110 120 130
100 110 120 130 140 150
mFLJ00 ALQLPEPSPLRPKLEKRPRLPRKLKMSVGPPDCPVGGPLAFPARGSGASVGAALTPLPPP
::::::::::::: ::::::::::::.::::::::::::.::.:::::.:::::.:::::
gi|739 ALQLPEPSPLRPKREKRPRLPRKLKMAVGPPDCPVGGPLTFPGRGSGAGVGAALAPLPPP
140 150 160 170 180 190
160 170 180
mFLJ00 KMPPHTILSTVPQQMFSDAGSGDDALDGDDDLVIDIPE
:::: ::::.::.:::::::::::::::::::::::::
gi|739 KMPPPTILSAVPRQMFSDAGSGDDALDGDDDLVIDIPE
200 210 220 230
>>gi|73958465|ref|XP_547064.2| PREDICTED: similar to CG1 (244 aa)
initn: 1219 init1: 1219 opt: 1219 Z-score: 1064.4 bits: 204.0 E(): 1.4e-50
Smith-Waterman score: 1219; 93.085% identity (98.404% similar) in 188 aa overlap (1-188:57-244)
10 20 30
mFLJ00 LLQYENVDEDSSDSDATASSDNSETEGTPK
::::::::::::::::::::::::::::::
gi|739 YEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPK
30 40 50 60 70 80
40 50 60 70 80 90
mFLJ00 LSDTPAPKRKRSPPMGGVPSPSSLSLPPSTGFPLQTSGAPSPYLSSLASPPYPPFPSDYL
::::::::::::::.::.:::::::::::::::::.: ::::::::::::::::::::::
gi|739 LSDTPAPKRKRSPPLGGAPSPSSLSLPPSTGFPLQASTAPSPYLSSLASPPYPPFPSDYL
90 100 110 120 130 140
100 110 120 130 140 150
mFLJ00 ALQLPEPSPLRPKLEKRPRLPRKLKMSVGPPDCPVGGPLAFPARGSGASVGAALTPLPPP
::::::::::::: ::::::::::::.::::::::::::.::.:::::.:::::.:::::
gi|739 ALQLPEPSPLRPKREKRPRLPRKLKMAVGPPDCPVGGPLTFPGRGSGAGVGAALAPLPPP
150 160 170 180 190 200
160 170 180
mFLJ00 KMPPHTILSTVPQQMFSDAGSGDDALDGDDDLVIDIPE
:::: ::::.::.:::::::::::::::::::::::::
gi|739 KMPPPTILSAVPRQMFSDAGSGDDALDGDDDLVIDIPE
210 220 230 240
>>gi|149725770|ref|XP_001501840.1| PREDICTED: similar to (244 aa)
initn: 1218 init1: 1218 opt: 1218 Z-score: 1063.6 bits: 203.9 E(): 1.6e-50
Smith-Waterman score: 1218; 93.085% identity (98.404% similar) in 188 aa overlap (1-188:57-244)
10 20 30
mFLJ00 LLQYENVDEDSSDSDATASSDNSETEGTPK
::::::::::::::::::::::::::::::
gi|149 YEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPK
30 40 50 60 70 80
40 50 60 70 80 90
mFLJ00 LSDTPAPKRKRSPPMGGVPSPSSLSLPPSTGFPLQTSGAPSPYLSSLASPPYPPFPSDYL
:::: :::::::::.::.:::::::::::::::::.::::::::::::::::::::::::
gi|149 LSDTSAPKRKRSPPLGGAPSPSSLSLPPSTGFPLQASGAPSPYLSSLASPPYPPFPSDYL
90 100 110 120 130 140
100 110 120 130 140 150
mFLJ00 ALQLPEPSPLRPKLEKRPRLPRKLKMSVGPPDCPVGGPLAFPARGSGASVGAALTPLPPP
::::::::::::: ::::::::::::.::::::::::::.::.:::::.:::::.:::::
gi|149 ALQLPEPSPLRPKREKRPRLPRKLKMAVGPPDCPVGGPLTFPGRGSGAGVGAALAPLPPP
150 160 170 180 190 200
160 170 180
mFLJ00 KMPPHTILSTVPQQMFSDAGSGDDALDGDDDLVIDIPE
:::: ::::.::.:::::::::::::::::::::::::
gi|149 KMPPPTILSAVPRQMFSDAGSGDDALDGDDDLVIDIPE
210 220 230 240
>>gi|109128122|ref|XP_001107210.1| PREDICTED: similar to (244 aa)
initn: 1216 init1: 1216 opt: 1216 Z-score: 1061.9 bits: 203.5 E(): 1.9e-50
Smith-Waterman score: 1216; 93.085% identity (98.404% similar) in 188 aa overlap (1-188:57-244)
10 20 30
mFLJ00 LLQYENVDEDSSDSDATASSDNSETEGTPK
::::::::::::::::::::::::::::::
gi|109 YEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPK
30 40 50 60 70 80
40 50 60 70 80 90
mFLJ00 LSDTPAPKRKRSPPMGGVPSPSSLSLPPSTGFPLQTSGAPSPYLSSLASPPYPPFPSDYL
::::::::::::::.::.:::::::::::::::::.::.::::::::::: :::::::::
gi|109 LSDTPAPKRKRSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSLASPRYPPFPSDYL
90 100 110 120 130 140
100 110 120 130 140 150
mFLJ00 ALQLPEPSPLRPKLEKRPRLPRKLKMSVGPPDCPVGGPLAFPARGSGASVGAALTPLPPP
::::::::::::: ::::::::::::.::::::::::::.::.:::::.::.::::::::
gi|109 ALQLPEPSPLRPKREKRPRLPRKLKMAVGPPDCPVGGPLTFPGRGSGAGVGTALTPLPPP
150 160 170 180 190 200
160 170 180
mFLJ00 KMPPHTILSTVPQQMFSDAGSGDDALDGDDDLVIDIPE
:::: :::::::.:::::::::::::::::::::::::
gi|109 KMPPPTILSTVPRQMFSDAGSGDDALDGDDDLVIDIPE
210 220 230 240
>>gi|114661928|ref|XP_001147129.1| PREDICTED: hypothetic (244 aa)
initn: 1211 init1: 1211 opt: 1211 Z-score: 1057.6 bits: 202.8 E(): 3.4e-50
Smith-Waterman score: 1211; 92.553% identity (98.404% similar) in 188 aa overlap (1-188:57-244)
10 20 30
mFLJ00 LLQYENVDEDSSDSDATASSDNSETEGTPK
::::::::::::::::::::::::::::::
gi|114 YEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPK
30 40 50 60 70 80
40 50 60 70 80 90
mFLJ00 LSDTPAPKRKRSPPMGGVPSPSSLSLPPSTGFPLQTSGAPSPYLSSLASPPYPPFPSDYL
::::::::::::::.::.:::::::::::::::::.::.::::::::::: :::::::::
gi|114 LSDTPAPKRKRSPPLGGTPSPSSLSLPPSTGFPLQASGVPSPYLSSLASPRYPPFPSDYL
90 100 110 120 130 140
100 110 120 130 140 150
mFLJ00 ALQLPEPSPLRPKLEKRPRLPRKLKMSVGPPDCPVGGPLAFPARGSGASVGAALTPLPPP
::::::::::::: ::::::::::::.::::::::::::.::.:::::.::..:::::::
gi|114 ALQLPEPSPLRPKREKRPRLPRKLKMAVGPPDCPVGGPLTFPGRGSGAGVGTTLTPLPPP
150 160 170 180 190 200
160 170 180
mFLJ00 KMPPHTILSTVPQQMFSDAGSGDDALDGDDDLVIDIPE
:::: :::::::.:::::::::::::::::::::::::
gi|114 KMPPPTILSTVPRQMFSDAGSGDDALDGDDDLVIDIPE
210 220 230 240
>>gi|97046498|sp|Q29RS4.1|IN80E_BOVIN RecName: Full=INO8 (244 aa)
initn: 1207 init1: 1207 opt: 1207 Z-score: 1054.1 bits: 202.1 E(): 5.2e-50
Smith-Waterman score: 1207; 92.553% identity (97.872% similar) in 188 aa overlap (1-188:57-244)
10 20 30
mFLJ00 LLQYENVDEDSSDSDATASSDNSETEGTPK
::::::::::::::::::::::::::::::
gi|970 YEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPK
30 40 50 60 70 80
40 50 60 70 80 90
mFLJ00 LSDTPAPKRKRSPPMGGVPSPSSLSLPPSTGFPLQTSGAPSPYLSSLASPPYPPFPSDYL
::::::::::::::.::.:::::::::::::::::.: :::::::::::: :::::::::
gi|970 LSDTPAPKRKRSPPLGGAPSPSSLSLPPSTGFPLQASRAPSPYLSSLASPTYPPFPSDYL
90 100 110 120 130 140
100 110 120 130 140 150
mFLJ00 ALQLPEPSPLRPKLEKRPRLPRKLKMSVGPPDCPVGGPLAFPARGSGASVGAALTPLPPP
::::::::::::: ::::::::::::.::::::::::::.::.:::::.:::::.:::::
gi|970 ALQLPEPSPLRPKREKRPRLPRKLKMAVGPPDCPVGGPLTFPGRGSGAGVGAALAPLPPP
150 160 170 180 190 200
160 170 180
mFLJ00 KMPPHTILSTVPQQMFSDAGSGDDALDGDDDLVIDIPE
:::: ::::.::.:::::::::::::::::::::::::
gi|970 KMPPPTILSAVPRQMFSDAGSGDDALDGDDDLVIDIPE
210 220 230 240
188 residues in 1 query sequences
2727779818 residues in 7921681 library sequences
Tcomplib [34.26] (2 proc)
start: Thu Mar 12 23:51:12 2009 done: Thu Mar 12 23:55:46 2009
Total Scan time: 656.690 Total Display time: 0.020
Function used was FASTA [version 34.26.5 April 26, 2007]