# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/msk08063.fasta.nr -Q ../query/mFLJ00210.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mFLJ00210, 188 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7905071 sequences Expectation_n fit: rho(ln(x))= 6.8790+/-0.000206; mu= 0.7957+/- 0.011 mean_var=135.3923+/-25.988, 0's: 39 Z-trim: 68 B-trim: 80 in 1/66 Lambda= 0.110224 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|20071573|gb|AAH26475.1| NO80 complex subunit E ( 205) 1298 216.5 2e-54 gi|148685511|gb|EDL17458.1| coiled-coil domain con ( 340) 1298 216.7 3e-54 gi|149067815|gb|EDM17367.1| similar to hypothetica ( 205) 1286 214.6 7.6e-54 gi|81884598|sp|Q6AYH2.1|IN80E_RAT RecName: Full=IN ( 244) 1286 214.7 8.6e-54 gi|73958467|ref|XP_858555.1| PREDICTED: similar to ( 230) 1219 204.0 1.3e-50 gi|73958465|ref|XP_547064.2| PREDICTED: similar to ( 244) 1219 204.0 1.4e-50 gi|149725770|ref|XP_001501840.1| PREDICTED: simila ( 244) 1218 203.9 1.6e-50 gi|109128122|ref|XP_001107210.1| PREDICTED: simila ( 244) 1216 203.5 1.9e-50 gi|114661928|ref|XP_001147129.1| PREDICTED: hypoth ( 244) 1211 202.8 3.4e-50 gi|97046498|sp|Q29RS4.1|IN80E_BOVIN RecName: Full= ( 244) 1207 202.1 5.2e-50 gi|74730149|sp|Q8NBZ0.1|IN80E_HUMAN RecName: Full= ( 244) 1200 201.0 1.1e-49 gi|126335530|ref|XP_001364052.1| PREDICTED: hypoth ( 245) 1139 191.3 9.4e-47 gi|149417830|ref|XP_001521309.1| PREDICTED: hypoth ( 217) 1102 185.4 5.1e-45 gi|148685513|gb|EDL17460.1| coiled-coil domain con ( 144) 1012 170.9 7.6e-41 gi|149067813|gb|EDM17365.1| similar to hypothetica ( 144) 1000 169.0 2.8e-40 gi|148685515|gb|EDL17462.1| coiled-coil domain con ( 163) 927 157.4 9.7e-37 gi|149067807|gb|EDM17359.1| similar to hypothetica ( 163) 915 155.5 3.7e-36 gi|73958471|ref|XP_858644.1| PREDICTED: similar to ( 194) 753 129.8 2.4e-28 gi|114661932|ref|XP_001146930.1| PREDICTED: hypoth ( 195) 750 129.4 3.3e-28 gi|119600363|gb|EAW79957.1| hypothetical protein F ( 188) 731 126.3 2.6e-27 gi|119600360|gb|EAW79954.1| hypothetical protein F ( 193) 730 126.2 3e-27 gi|148685514|gb|EDL17461.1| coiled-coil domain con ( 205) 561 99.3 3.8e-19 gi|148685512|gb|EDL17459.1| coiled-coil domain con ( 105) 536 95.1 3.6e-18 gi|149067809|gb|EDM17361.1| similar to hypothetica ( 105) 534 94.8 4.5e-18 gi|109128124|ref|XP_001107089.1| PREDICTED: simila ( 205) 508 90.9 1.3e-16 gi|114661934|ref|XP_001147002.1| PREDICTED: hypoth ( 205) 508 90.9 1.3e-16 gi|33417050|gb|AAH55928.1| Ino80e protein [Mus mus ( 138) 505 90.3 1.4e-16 gi|119600364|gb|EAW79958.1| hypothetical protein F ( 163) 503 90.0 1.9e-16 gi|73958469|ref|XP_849376.1| PREDICTED: similar to ( 205) 502 89.9 2.6e-16 gi|152001055|gb|AAI48161.1| INO80E protein [Bos ta ( 205) 501 89.8 2.9e-16 gi|149067805|gb|EDM17357.1| similar to hypothetica ( 140) 497 89.0 3.3e-16 gi|37779148|gb|AAO86733.1| LP9167 protein [Homo sa ( 137) 484 86.9 1.4e-15 gi|18676622|dbj|BAB84963.1| FLJ00210 protein [Homo ( 161) 484 87.0 1.6e-15 gi|18676414|dbj|BAB84859.1| FLJ00079 protein [Homo ( 84) 477 85.7 2e-15 gi|73970558|ref|XP_860832.1| PREDICTED: hypothetic ( 87) 383 70.7 6.6e-11 gi|34785899|gb|AAH57737.1| MGC68961 protein [Xenop ( 628) 249 50.1 0.00077 gi|220726449|gb|EED80398.1| predicted protein [Pos ( 476) 238 48.3 0.0021 gi|530878|gb|AAB53954.1| amino acid feature: N-gly ( 351) 228 46.6 0.005 gi|149411675|ref|XP_001508405.1| PREDICTED: simila ( 466) 229 46.8 0.0056 gi|40807074|gb|AAH65338.1| Zgc:77312 [Danio rerio] ( 231) 219 45.0 0.0099 >>gi|20071573|gb|AAH26475.1| NO80 complex subunit E [Mus (205 aa) initn: 1298 init1: 1298 opt: 1298 Z-score: 1133.4 bits: 216.5 E(): 2e-54 Smith-Waterman score: 1298; 100.000% identity (100.000% similar) in 188 aa overlap (1-188:18-205) 10 20 30 40 mFLJ00 LLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRKRSP ::::::::::::::::::::::::::::::::::::::::::: gi|200 MGIPTLLPTCLSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRKRSP 10 20 30 40 50 60 50 60 70 80 90 100 mFLJ00 PMGGVPSPSSLSLPPSTGFPLQTSGAPSPYLSSLASPPYPPFPSDYLALQLPEPSPLRPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|200 PMGGVPSPSSLSLPPSTGFPLQTSGAPSPYLSSLASPPYPPFPSDYLALQLPEPSPLRPK 70 80 90 100 110 120 110 120 130 140 150 160 mFLJ00 LEKRPRLPRKLKMSVGPPDCPVGGPLAFPARGSGASVGAALTPLPPPKMPPHTILSTVPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|200 LEKRPRLPRKLKMSVGPPDCPVGGPLAFPARGSGASVGAALTPLPPPKMPPHTILSTVPQ 130 140 150 160 170 180 170 180 mFLJ00 QMFSDAGSGDDALDGDDDLVIDIPE ::::::::::::::::::::::::: gi|200 QMFSDAGSGDDALDGDDDLVIDIPE 190 200 >>gi|148685511|gb|EDL17458.1| coiled-coil domain contain (340 aa) initn: 1298 init1: 1298 opt: 1298 Z-score: 1130.4 bits: 216.7 E(): 3e-54 Smith-Waterman score: 1298; 100.000% identity (100.000% similar) in 188 aa overlap (1-188:153-340) 10 20 30 mFLJ00 LLQYENVDEDSSDSDATASSDNSETEGTPK :::::::::::::::::::::::::::::: gi|148 YEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPK 130 140 150 160 170 180 40 50 60 70 80 90 mFLJ00 LSDTPAPKRKRSPPMGGVPSPSSLSLPPSTGFPLQTSGAPSPYLSSLASPPYPPFPSDYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LSDTPAPKRKRSPPMGGVPSPSSLSLPPSTGFPLQTSGAPSPYLSSLASPPYPPFPSDYL 190 200 210 220 230 240 100 110 120 130 140 150 mFLJ00 ALQLPEPSPLRPKLEKRPRLPRKLKMSVGPPDCPVGGPLAFPARGSGASVGAALTPLPPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 ALQLPEPSPLRPKLEKRPRLPRKLKMSVGPPDCPVGGPLAFPARGSGASVGAALTPLPPP 250 260 270 280 290 300 160 170 180 mFLJ00 KMPPHTILSTVPQQMFSDAGSGDDALDGDDDLVIDIPE :::::::::::::::::::::::::::::::::::::: gi|148 KMPPHTILSTVPQQMFSDAGSGDDALDGDDDLVIDIPE 310 320 330 340 >>gi|149067815|gb|EDM17367.1| similar to hypothetical pr (205 aa) initn: 1286 init1: 1286 opt: 1286 Z-score: 1123.1 bits: 214.6 E(): 7.6e-54 Smith-Waterman score: 1286; 98.404% identity (100.000% similar) in 188 aa overlap (1-188:18-205) 10 20 30 40 mFLJ00 LLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRKRSP ::::::::::::::::::::::::::::::::::::::::::: gi|149 MGIIILLPTSLSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRKRSP 10 20 30 40 50 60 50 60 70 80 90 100 mFLJ00 PMGGVPSPSSLSLPPSTGFPLQTSGAPSPYLSSLASPPYPPFPSDYLALQLPEPSPLRPK ::::.:::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|149 PMGGAPSPSSLSLPPSSGFPLQTSGAPSPYLSSLASPPYPPFPSDYLALQLPEPSPLRPK 70 80 90 100 110 120 110 120 130 140 150 160 mFLJ00 LEKRPRLPRKLKMSVGPPDCPVGGPLAFPARGSGASVGAALTPLPPPKMPPHTILSTVPQ :::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::: gi|149 LEKRPRLPRKLKMAVGPPDCPVGGPLAFPARGSGASVGAALTPLPPPKMPPHTILSTVPQ 130 140 150 160 170 180 170 180 mFLJ00 QMFSDAGSGDDALDGDDDLVIDIPE ::::::::::::::::::::::::: gi|149 QMFSDAGSGDDALDGDDDLVIDIPE 190 200 >>gi|81884598|sp|Q6AYH2.1|IN80E_RAT RecName: Full=INO80 (244 aa) initn: 1286 init1: 1286 opt: 1286 Z-score: 1122.0 bits: 214.7 E(): 8.6e-54 Smith-Waterman score: 1286; 98.404% identity (100.000% similar) in 188 aa overlap (1-188:57-244) 10 20 30 mFLJ00 LLQYENVDEDSSDSDATASSDNSETEGTPK :::::::::::::::::::::::::::::: gi|818 YEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPK 30 40 50 60 70 80 40 50 60 70 80 90 mFLJ00 LSDTPAPKRKRSPPMGGVPSPSSLSLPPSTGFPLQTSGAPSPYLSSLASPPYPPFPSDYL :::::::::::::::::.:::::::::::.:::::::::::::::::::::::::::::: gi|818 LSDTPAPKRKRSPPMGGAPSPSSLSLPPSSGFPLQTSGAPSPYLSSLASPPYPPFPSDYL 90 100 110 120 130 140 100 110 120 130 140 150 mFLJ00 ALQLPEPSPLRPKLEKRPRLPRKLKMSVGPPDCPVGGPLAFPARGSGASVGAALTPLPPP ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: gi|818 ALQLPEPSPLRPKLEKRPRLPRKLKMAVGPPDCPVGGPLAFPARGSGASVGAALTPLPPP 150 160 170 180 190 200 160 170 180 mFLJ00 KMPPHTILSTVPQQMFSDAGSGDDALDGDDDLVIDIPE :::::::::::::::::::::::::::::::::::::: gi|818 KMPPHTILSTVPQQMFSDAGSGDDALDGDDDLVIDIPE 210 220 230 240 >>gi|73958467|ref|XP_858555.1| PREDICTED: similar to CG1 (230 aa) initn: 1219 init1: 1219 opt: 1219 Z-score: 1064.8 bits: 204.0 E(): 1.3e-50 Smith-Waterman score: 1219; 93.085% identity (98.404% similar) in 188 aa overlap (1-188:43-230) 10 20 30 mFLJ00 LLQYENVDEDSSDSDATASSDNSETEGTPK :::::::::::::::::::::::::::::: gi|739 QEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPK 20 30 40 50 60 70 40 50 60 70 80 90 mFLJ00 LSDTPAPKRKRSPPMGGVPSPSSLSLPPSTGFPLQTSGAPSPYLSSLASPPYPPFPSDYL ::::::::::::::.::.:::::::::::::::::.: :::::::::::::::::::::: gi|739 LSDTPAPKRKRSPPLGGAPSPSSLSLPPSTGFPLQASTAPSPYLSSLASPPYPPFPSDYL 80 90 100 110 120 130 100 110 120 130 140 150 mFLJ00 ALQLPEPSPLRPKLEKRPRLPRKLKMSVGPPDCPVGGPLAFPARGSGASVGAALTPLPPP ::::::::::::: ::::::::::::.::::::::::::.::.:::::.:::::.::::: gi|739 ALQLPEPSPLRPKREKRPRLPRKLKMAVGPPDCPVGGPLTFPGRGSGAGVGAALAPLPPP 140 150 160 170 180 190 160 170 180 mFLJ00 KMPPHTILSTVPQQMFSDAGSGDDALDGDDDLVIDIPE :::: ::::.::.::::::::::::::::::::::::: gi|739 KMPPPTILSAVPRQMFSDAGSGDDALDGDDDLVIDIPE 200 210 220 230 >>gi|73958465|ref|XP_547064.2| PREDICTED: similar to CG1 (244 aa) initn: 1219 init1: 1219 opt: 1219 Z-score: 1064.4 bits: 204.0 E(): 1.4e-50 Smith-Waterman score: 1219; 93.085% identity (98.404% similar) in 188 aa overlap (1-188:57-244) 10 20 30 mFLJ00 LLQYENVDEDSSDSDATASSDNSETEGTPK :::::::::::::::::::::::::::::: gi|739 YEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPK 30 40 50 60 70 80 40 50 60 70 80 90 mFLJ00 LSDTPAPKRKRSPPMGGVPSPSSLSLPPSTGFPLQTSGAPSPYLSSLASPPYPPFPSDYL ::::::::::::::.::.:::::::::::::::::.: :::::::::::::::::::::: gi|739 LSDTPAPKRKRSPPLGGAPSPSSLSLPPSTGFPLQASTAPSPYLSSLASPPYPPFPSDYL 90 100 110 120 130 140 100 110 120 130 140 150 mFLJ00 ALQLPEPSPLRPKLEKRPRLPRKLKMSVGPPDCPVGGPLAFPARGSGASVGAALTPLPPP ::::::::::::: ::::::::::::.::::::::::::.::.:::::.:::::.::::: gi|739 ALQLPEPSPLRPKREKRPRLPRKLKMAVGPPDCPVGGPLTFPGRGSGAGVGAALAPLPPP 150 160 170 180 190 200 160 170 180 mFLJ00 KMPPHTILSTVPQQMFSDAGSGDDALDGDDDLVIDIPE :::: ::::.::.::::::::::::::::::::::::: gi|739 KMPPPTILSAVPRQMFSDAGSGDDALDGDDDLVIDIPE 210 220 230 240 >>gi|149725770|ref|XP_001501840.1| PREDICTED: similar to (244 aa) initn: 1218 init1: 1218 opt: 1218 Z-score: 1063.6 bits: 203.9 E(): 1.6e-50 Smith-Waterman score: 1218; 93.085% identity (98.404% similar) in 188 aa overlap (1-188:57-244) 10 20 30 mFLJ00 LLQYENVDEDSSDSDATASSDNSETEGTPK :::::::::::::::::::::::::::::: gi|149 YEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPK 30 40 50 60 70 80 40 50 60 70 80 90 mFLJ00 LSDTPAPKRKRSPPMGGVPSPSSLSLPPSTGFPLQTSGAPSPYLSSLASPPYPPFPSDYL :::: :::::::::.::.:::::::::::::::::.:::::::::::::::::::::::: gi|149 LSDTSAPKRKRSPPLGGAPSPSSLSLPPSTGFPLQASGAPSPYLSSLASPPYPPFPSDYL 90 100 110 120 130 140 100 110 120 130 140 150 mFLJ00 ALQLPEPSPLRPKLEKRPRLPRKLKMSVGPPDCPVGGPLAFPARGSGASVGAALTPLPPP ::::::::::::: ::::::::::::.::::::::::::.::.:::::.:::::.::::: gi|149 ALQLPEPSPLRPKREKRPRLPRKLKMAVGPPDCPVGGPLTFPGRGSGAGVGAALAPLPPP 150 160 170 180 190 200 160 170 180 mFLJ00 KMPPHTILSTVPQQMFSDAGSGDDALDGDDDLVIDIPE :::: ::::.::.::::::::::::::::::::::::: gi|149 KMPPPTILSAVPRQMFSDAGSGDDALDGDDDLVIDIPE 210 220 230 240 >>gi|109128122|ref|XP_001107210.1| PREDICTED: similar to (244 aa) initn: 1216 init1: 1216 opt: 1216 Z-score: 1061.9 bits: 203.5 E(): 1.9e-50 Smith-Waterman score: 1216; 93.085% identity (98.404% similar) in 188 aa overlap (1-188:57-244) 10 20 30 mFLJ00 LLQYENVDEDSSDSDATASSDNSETEGTPK :::::::::::::::::::::::::::::: gi|109 YEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPK 30 40 50 60 70 80 40 50 60 70 80 90 mFLJ00 LSDTPAPKRKRSPPMGGVPSPSSLSLPPSTGFPLQTSGAPSPYLSSLASPPYPPFPSDYL ::::::::::::::.::.:::::::::::::::::.::.::::::::::: ::::::::: gi|109 LSDTPAPKRKRSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSLASPRYPPFPSDYL 90 100 110 120 130 140 100 110 120 130 140 150 mFLJ00 ALQLPEPSPLRPKLEKRPRLPRKLKMSVGPPDCPVGGPLAFPARGSGASVGAALTPLPPP ::::::::::::: ::::::::::::.::::::::::::.::.:::::.::.:::::::: gi|109 ALQLPEPSPLRPKREKRPRLPRKLKMAVGPPDCPVGGPLTFPGRGSGAGVGTALTPLPPP 150 160 170 180 190 200 160 170 180 mFLJ00 KMPPHTILSTVPQQMFSDAGSGDDALDGDDDLVIDIPE :::: :::::::.::::::::::::::::::::::::: gi|109 KMPPPTILSTVPRQMFSDAGSGDDALDGDDDLVIDIPE 210 220 230 240 >>gi|114661928|ref|XP_001147129.1| PREDICTED: hypothetic (244 aa) initn: 1211 init1: 1211 opt: 1211 Z-score: 1057.6 bits: 202.8 E(): 3.4e-50 Smith-Waterman score: 1211; 92.553% identity (98.404% similar) in 188 aa overlap (1-188:57-244) 10 20 30 mFLJ00 LLQYENVDEDSSDSDATASSDNSETEGTPK :::::::::::::::::::::::::::::: gi|114 YEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPK 30 40 50 60 70 80 40 50 60 70 80 90 mFLJ00 LSDTPAPKRKRSPPMGGVPSPSSLSLPPSTGFPLQTSGAPSPYLSSLASPPYPPFPSDYL ::::::::::::::.::.:::::::::::::::::.::.::::::::::: ::::::::: gi|114 LSDTPAPKRKRSPPLGGTPSPSSLSLPPSTGFPLQASGVPSPYLSSLASPRYPPFPSDYL 90 100 110 120 130 140 100 110 120 130 140 150 mFLJ00 ALQLPEPSPLRPKLEKRPRLPRKLKMSVGPPDCPVGGPLAFPARGSGASVGAALTPLPPP ::::::::::::: ::::::::::::.::::::::::::.::.:::::.::..::::::: gi|114 ALQLPEPSPLRPKREKRPRLPRKLKMAVGPPDCPVGGPLTFPGRGSGAGVGTTLTPLPPP 150 160 170 180 190 200 160 170 180 mFLJ00 KMPPHTILSTVPQQMFSDAGSGDDALDGDDDLVIDIPE :::: :::::::.::::::::::::::::::::::::: gi|114 KMPPPTILSTVPRQMFSDAGSGDDALDGDDDLVIDIPE 210 220 230 240 >>gi|97046498|sp|Q29RS4.1|IN80E_BOVIN RecName: Full=INO8 (244 aa) initn: 1207 init1: 1207 opt: 1207 Z-score: 1054.1 bits: 202.1 E(): 5.2e-50 Smith-Waterman score: 1207; 92.553% identity (97.872% similar) in 188 aa overlap (1-188:57-244) 10 20 30 mFLJ00 LLQYENVDEDSSDSDATASSDNSETEGTPK :::::::::::::::::::::::::::::: gi|970 YEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPK 30 40 50 60 70 80 40 50 60 70 80 90 mFLJ00 LSDTPAPKRKRSPPMGGVPSPSSLSLPPSTGFPLQTSGAPSPYLSSLASPPYPPFPSDYL ::::::::::::::.::.:::::::::::::::::.: :::::::::::: ::::::::: gi|970 LSDTPAPKRKRSPPLGGAPSPSSLSLPPSTGFPLQASRAPSPYLSSLASPTYPPFPSDYL 90 100 110 120 130 140 100 110 120 130 140 150 mFLJ00 ALQLPEPSPLRPKLEKRPRLPRKLKMSVGPPDCPVGGPLAFPARGSGASVGAALTPLPPP ::::::::::::: ::::::::::::.::::::::::::.::.:::::.:::::.::::: gi|970 ALQLPEPSPLRPKREKRPRLPRKLKMAVGPPDCPVGGPLTFPGRGSGAGVGAALAPLPPP 150 160 170 180 190 200 160 170 180 mFLJ00 KMPPHTILSTVPQQMFSDAGSGDDALDGDDDLVIDIPE :::: ::::.::.::::::::::::::::::::::::: gi|970 KMPPPTILSAVPRQMFSDAGSGDDALDGDDDLVIDIPE 210 220 230 240 188 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Thu Mar 12 23:51:12 2009 done: Thu Mar 12 23:55:46 2009 Total Scan time: 656.690 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]