FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0085.ptfa, 263 aa
 vs ./tmplib.26680 library

1768754 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.5115+/-0.00458; mu= 14.9955+/- 0.307
 mean_var=89.2559+/-20.027, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1358

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0108  ( 273 res)   mpk01802                   ( 273)  140   36  0.0016


>>mKIAA0108  ( 273 res)   mpk01802                        (273 aa)
 initn: 226 init1: 110 opt: 140  Z-score: 155.5  bits: 36.5 E(): 0.0016
Smith-Waterman score: 202;  28.682% identity (31.356% ungapped) in 129 aa overlap (135-260:150-270)

          110       120       130       140       150       160    
mKIAA0 FLLCLLTLLGSYIELPAYLKLARPRPGPSKVPLMTLQLLDFCLSILTLCSSYMEVPTYLN
                                     .:..  .:.:: :: :.  ::   .:   .
mKIAA0 ACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKE
     120       130       140       150       160       170         

          170       180       190       200       210       220    
mKIAA0 FKSMNHMNYLPSQEGVPHSQFINMMLIFSVAFITVLILKVYMFKCVYTCYKFLKHMNSAM
       .  ....  .: .. .   .   ...:  : :.. .:.:.:...::..:::.... :   
mKIAA0 Y--LDQLPDFPYKDDLLALDSSCLLFIVLVFFVVFIIFKAYLINCVWNCYKYINNRNVP-
     180         190       200       210       220       230       

          230          240       250       260   
mKIAA0 EDSSSKMFL---KVALPSYEEALSLPPKTPEGDPAPPPYSEV
       : .    :    . .::.:: :...: : :     ::::   
mKIAA0 EIAVYPAFETPPQYVLPTYEMAVKIPEKEP-----PPPYLPA
        240       250       260            270   




263 residues in 1 query   sequences
1768754 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:11:55 2006 done: Mon Mar 27 10:11:56 2006
 Scan time:  0.470 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]