FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0178.ptfa, 236 aa
 vs ./tmplib.26680 library

1768781 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.8835+/-0.00463; mu= 18.2501+/- 0.310
 mean_var=111.3855+/-24.984, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.1215

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0594  ( 773 res)   mbg01891                   ( 773)  149   37  0.0035


>>mKIAA0594  ( 773 res)   mbg01891                        (773 aa)
 initn: 154 init1: 101 opt: 149  Z-score: 149.4  bits: 36.7 E(): 0.0035
Smith-Waterman score: 149;  18.519% identity (19.608% ungapped) in 216 aa overlap (1-207:532-744)

                                             10        20        30
mKIAA0                               EIKQEMNTLQQKLNEQQSVLQRIAAPNMKA
                                     .. . .. ..  :.:..:  . ... : ..
mKIAA0 CNLSADQAVPQEFQTVSIKISNSSPPMAFQDLPNTLDEIDALLTEERSRASCFTGLNPSV
             510       520       530       540       550       560 

               40        50        60        70        80        90
mKIAA0 MEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKA
       .:.  . . ..:. ..:... . .  . .. . :.:.. .. ..   :..  ........
mKIAA0 VEEYSKREVEIQQLTEELQGKKVELDEYRENISQVKERWLNPLKELVEKINEKFSNFFSS
             570       580       590       600       610       620 

              100       110           120       130       140      
mKIAA0 LSRNSSAQAFLGPENPEEPYLDGI----NYNCVAPGKRFRPMDNLSGGEKTVAALALLFA
       ..   .... :  :: :.    ::    ..   .  ... :  . ::::..:...  :.:
mKIAA0 MQ--CAGEVDLHTENEEDYDKYGIRIRVKFRSSTQLHELTPHHQ-SGGERSVSTMLYLMA
               630       640       650       660        670        

        150       160       170            180       190       200 
mKIAA0 IHSYKPAPFFVLDEIDAALDNTNIGKVANYI-----KEQSTCNFQAIVISLKEEFYTKAE
       ..  .  :: :.:::. ..:  :  .: ...     ::...  :      :..  :..  
mKIAA0 LQELNRCPFRVVDEINQGMDPINERRVFEMVVNTACKENTSQYFFITPKLLQNLPYSEKM
      680       690       700       710       720       730        

             210       220       230      
mKIAA0 SLIGVYPEQGDCVISKVLTFDLTKYPDANPNPNEQ
       ... ::                             
mKIAA0 TVLFVYNGPHMLEPNRWNLKAFQRRRRRITFTQPQ
      740       750       760       770   




236 residues in 1 query   sequences
1768781 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:13:53 2006 done: Mon Mar 27 10:13:54 2006
 Scan time:  0.440 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]