# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/msk06204.fasta.nr -Q ../query/mKIAA0178.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0178, 236 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7918586 sequences Expectation_n fit: rho(ln(x))= 5.4849+/-0.000187; mu= 6.9482+/- 0.010 mean_var=81.4674+/-16.156, 0's: 26 Z-trim: 44 B-trim: 1635 in 1/64 Lambda= 0.142096 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|74152875|dbj|BAE43202.1| unnamed protein produc ( 257) 1535 323.7 1.7e-86 gi|33585731|gb|AAH55477.1| Smc1a protein [Mus musc ( 362) 1535 323.8 2.2e-86 gi|119613555|gb|EAW93149.1| SMC1 structural mainte ( 545) 1535 324.0 3e-86 gi|194227956|ref|XP_001914824.1| PREDICTED: simila ( 592) 1535 324.0 3.2e-86 gi|119613557|gb|EAW93151.1| SMC1 structural mainte (1099) 1535 324.2 5.2e-86 gi|123220915|emb|CAM23830.1| structural maintenanc (1233) 1535 324.2 5.7e-86 gi|29336527|sp|Q9Z1M9.1|SMC1A_RAT RecName: Full=St (1233) 1535 324.2 5.7e-86 gi|999380|gb|AAB34405.1| mitosis-specific chromoso (1233) 1535 324.2 5.7e-86 gi|149031310|gb|EDL86308.1| structural maintenance (1233) 1535 324.2 5.7e-86 gi|29336595|sp|O97593.1|SMC1A_BOVIN RecName: Full= (1233) 1535 324.2 5.7e-86 gi|74007448|ref|XP_538049.2| PREDICTED: similar to (1295) 1535 324.2 6e-86 gi|149567471|ref|XP_001512488.1| PREDICTED: hypoth (1192) 1529 323.0 1.3e-85 gi|29336930|sp|Q9CU62.3|SMC1A_MOUSE RecName: Full= (1233) 1529 323.0 1.3e-85 gi|126340324|ref|XP_001362224.1| PREDICTED: simila (1233) 1522 321.6 3.6e-85 gi|29837126|emb|CAD58850.2| SMC1 protein cohesin s (1234) 1484 313.8 8.1e-83 gi|125852264|ref|XP_688120.2| PREDICTED: similar t (1232) 1471 311.1 5.1e-82 gi|29336591|sp|O93308.1|SMC1A_XENLA RecName: Full= (1232) 1465 309.9 1.2e-81 gi|28436771|gb|AAH46691.1| Smc1l1 protein [Xenopus (1232) 1465 309.9 1.2e-81 gi|3098266|gb|AAC15582.1| mitosis-specific chromos (1233) 1463 309.5 1.6e-81 gi|49618927|gb|AAT68048.1| chromosome adhesion pro (1233) 1459 308.7 2.8e-81 gi|47228706|emb|CAG07438.1| unnamed protein produc (1277) 1436 303.9 7.6e-80 gi|31088222|dbj|BAC76893.1| SMC1 alpha [Oryzias la ( 814) 1429 302.4 1.4e-79 gi|148675529|gb|EDL07476.1| structural maintenance (1189) 1259 267.6 6e-69 gi|115730842|ref|XP_786064.2| PREDICTED: hypotheti (1247) 1191 253.7 9.8e-65 gi|109130919|ref|XP_001091228.1| PREDICTED: SMC1 s (1196) 1114 237.9 5.4e-60 gi|126338810|ref|XP_001378464.1| PREDICTED: simila (1240) 1087 232.4 2.6e-58 gi|73969294|ref|XP_538328.2| PREDICTED: similar to (1235) 1085 232.0 3.4e-58 gi|194226969|ref|XP_001488422.2| PREDICTED: struct (1225) 1084 231.8 3.9e-58 gi|194667559|ref|XP_001256619.2| PREDICTED: simila ( 598) 1078 230.3 5.2e-58 gi|34531934|dbj|BAC86266.1| unnamed protein produc ( 486) 1075 229.6 6.8e-58 gi|168985224|emb|CAQ09092.1| structural maintenanc ( 505) 1074 229.4 8e-58 gi|109094525|ref|XP_001109647.1| PREDICTED: simila (1234) 1077 230.3 1.1e-57 gi|57015410|sp|Q8NDV3.2|SMC1B_HUMAN RecName: Full= (1235) 1074 229.7 1.6e-57 gi|71565160|ref|NP_683515.3| SMC1 structural maint (1235) 1074 229.7 1.6e-57 gi|48427624|emb|CAD43404.2| SMC1beta protein [Homo (1235) 1074 229.7 1.6e-57 gi|119593789|gb|EAW73383.1| SMC1 structural mainte (1247) 1074 229.7 1.6e-57 gi|119593787|gb|EAW73381.1| SMC1 structural mainte (1260) 1074 229.7 1.6e-57 gi|114686916|ref|XP_001135642.1| PREDICTED: SMC1 s (1235) 1073 229.5 1.9e-57 gi|114686914|ref|XP_515195.2| PREDICTED: SMC1 stru (1235) 1073 229.5 1.9e-57 gi|149065716|gb|EDM15589.1| SMC (structural mainte (1247) 1071 229.1 2.5e-57 gi|29336874|sp|Q920F6.1|SMC1B_MOUSE RecName: Full= (1248) 1070 228.9 2.9e-57 gi|149436615|ref|XP_001511311.1| PREDICTED: simila (1329) 1069 228.7 3.5e-57 gi|66506890|ref|XP_395059.2| PREDICTED: similar to (1230) 1066 228.1 5e-57 gi|193591985|ref|XP_001948129.1| PREDICTED: simila (1239) 1046 224.0 8.7e-56 gi|156228799|gb|EDO49596.1| predicted protein [Nem (1216) 1021 218.9 3e-54 gi|198421707|ref|XP_002129062.1| PREDICTED: simila (1225) 1015 217.6 7e-54 gi|91088785|ref|XP_967679.1| PREDICTED: similar to (1222) 1002 215.0 4.4e-53 gi|118083143|ref|XP_416467.2| PREDICTED: similar t (1243) 1001 214.8 5.2e-53 gi|221119871|ref|XP_002155805.1| PREDICTED: simila (1097) 997 213.9 8.3e-53 gi|27227572|emb|CAD59403.1| SMC1 protein [Anophele (1229) 995 213.5 1.2e-52 >>gi|74152875|dbj|BAE43202.1| unnamed protein product [M (257 aa) initn: 1535 init1: 1535 opt: 1535 Z-score: 1709.2 bits: 323.7 E(): 1.7e-86 Smith-Waterman score: 1535; 100.000% identity (100.000% similar) in 236 aa overlap (1-236:22-257) 10 20 30 mKIAA0 EIKQEMNTLQQKLNEQQSVLQRIAAPNMKAMEKLESVRD ::::::::::::::::::::::::::::::::::::::: gi|741 GLIEIDYGDLCEDLKDAQAEEEIKQEMNTLQQKLNEQQSVLQRIAAPNMKAMEKLESVRD 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA0 KFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKALSRNSSAQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 KFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKALSRNSSAQA 70 80 90 100 110 120 100 110 120 130 140 150 mKIAA0 FLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 FLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLD 130 140 150 160 170 180 160 170 180 190 200 210 mKIAA0 EIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGVYPEQGDCVISKVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 EIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGVYPEQGDCVISKVL 190 200 210 220 230 240 220 230 mKIAA0 TFDLTKYPDANPNPNEQ ::::::::::::::::: gi|741 TFDLTKYPDANPNPNEQ 250 >>gi|33585731|gb|AAH55477.1| Smc1a protein [Mus musculus (362 aa) initn: 1535 init1: 1535 opt: 1535 Z-score: 1707.2 bits: 323.8 E(): 2.2e-86 Smith-Waterman score: 1535; 100.000% identity (100.000% similar) in 236 aa overlap (1-236:127-362) 10 20 30 mKIAA0 EIKQEMNTLQQKLNEQQSVLQRIAAPNMKA :::::::::::::::::::::::::::::: gi|335 RTSSIYAREALIEIDYGDLCEDLKDAQAEEEIKQEMNTLQQKLNEQQSVLQRIAAPNMKA 100 110 120 130 140 150 40 50 60 70 80 90 mKIAA0 MEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|335 MEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKA 160 170 180 190 200 210 100 110 120 130 140 150 mKIAA0 LSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|335 LSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY 220 230 240 250 260 270 160 170 180 190 200 210 mKIAA0 KPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGVYPEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|335 KPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGVYPEQ 280 290 300 310 320 330 220 230 mKIAA0 GDCVISKVLTFDLTKYPDANPNPNEQ :::::::::::::::::::::::::: gi|335 GDCVISKVLTFDLTKYPDANPNPNEQ 340 350 360 >>gi|119613555|gb|EAW93149.1| SMC1 structural maintenanc (545 aa) initn: 1535 init1: 1535 opt: 1535 Z-score: 1704.7 bits: 324.0 E(): 3e-86 Smith-Waterman score: 1535; 100.000% identity (100.000% similar) in 236 aa overlap (1-236:310-545) 10 20 30 mKIAA0 EIKQEMNTLQQKLNEQQSVLQRIAAPNMKA :::::::::::::::::::::::::::::: gi|119 RISSIYAREALIEIDYGDLCEDLKDAQAEEEIKQEMNTLQQKLNEQQSVLQRIAAPNMKA 280 290 300 310 320 330 40 50 60 70 80 90 mKIAA0 MEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKA 340 350 360 370 380 390 100 110 120 130 140 150 mKIAA0 LSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY 400 410 420 430 440 450 160 170 180 190 200 210 mKIAA0 KPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGVYPEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGVYPEQ 460 470 480 490 500 510 220 230 mKIAA0 GDCVISKVLTFDLTKYPDANPNPNEQ :::::::::::::::::::::::::: gi|119 GDCVISKVLTFDLTKYPDANPNPNEQ 520 530 540 >>gi|194227956|ref|XP_001914824.1| PREDICTED: similar to (592 aa) initn: 1535 init1: 1535 opt: 1535 Z-score: 1704.2 bits: 324.0 E(): 3.2e-86 Smith-Waterman score: 1535; 100.000% identity (100.000% similar) in 236 aa overlap (1-236:44-279) 10 20 30 mKIAA0 EIKQEMNTLQQKLNEQQSVLQRIAAPNMKA :::::::::::::::::::::::::::::: gi|194 RTSNIYAREALIEIDYGDLCEDLKDAQAEEEIKQEMNTLQQKLNEQQSVLQRIAAPNMKA 20 30 40 50 60 70 40 50 60 70 80 90 mKIAA0 MEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 MEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKA 80 90 100 110 120 130 100 110 120 130 140 150 mKIAA0 LSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY 140 150 160 170 180 190 160 170 180 190 200 210 mKIAA0 KPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGVYPEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 KPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGVYPEQ 200 210 220 230 240 250 220 230 mKIAA0 GDCVISKVLTFDLTKYPDANPNPNEQ :::::::::::::::::::::::::: gi|194 GDCVISKVLTFDLTKYPDANPNPNEQLGGELCSRGRPQLLAGGCSHGTLRGGAEVVALGS 260 270 280 290 300 310 >>gi|119613557|gb|EAW93151.1| SMC1 structural maintenanc (1099 aa) initn: 1535 init1: 1535 opt: 1535 Z-score: 1700.4 bits: 324.2 E(): 5.2e-86 Smith-Waterman score: 1535; 100.000% identity (100.000% similar) in 236 aa overlap (1-236:864-1099) 10 20 30 mKIAA0 EIKQEMNTLQQKLNEQQSVLQRIAAPNMKA :::::::::::::::::::::::::::::: gi|119 RISSIYAREALIEIDYGDLCEDLKDAQAEEEIKQEMNTLQQKLNEQQSVLQRIAAPNMKA 840 850 860 870 880 890 40 50 60 70 80 90 mKIAA0 MEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKA 900 910 920 930 940 950 100 110 120 130 140 150 mKIAA0 LSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY 960 970 980 990 1000 1010 160 170 180 190 200 210 mKIAA0 KPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGVYPEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGVYPEQ 1020 1030 1040 1050 1060 1070 220 230 mKIAA0 GDCVISKVLTFDLTKYPDANPNPNEQ :::::::::::::::::::::::::: gi|119 GDCVISKVLTFDLTKYPDANPNPNEQ 1080 1090 >>gi|123220915|emb|CAM23830.1| structural maintenance of (1233 aa) initn: 1535 init1: 1535 opt: 1535 Z-score: 1699.7 bits: 324.2 E(): 5.7e-86 Smith-Waterman score: 1535; 100.000% identity (100.000% similar) in 236 aa overlap (1-236:998-1233) 10 20 30 mKIAA0 EIKQEMNTLQQKLNEQQSVLQRIAAPNMKA :::::::::::::::::::::::::::::: gi|123 RTSSIYAREALIEIDYGDLCEDLKDAQAEEEIKQEMNTLQQKLNEQQSVLQRIAAPNMKA 970 980 990 1000 1010 1020 40 50 60 70 80 90 mKIAA0 MEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 MEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKA 1030 1040 1050 1060 1070 1080 100 110 120 130 140 150 mKIAA0 LSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 LSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY 1090 1100 1110 1120 1130 1140 160 170 180 190 200 210 mKIAA0 KPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGVYPEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 KPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGVYPEQ 1150 1160 1170 1180 1190 1200 220 230 mKIAA0 GDCVISKVLTFDLTKYPDANPNPNEQ :::::::::::::::::::::::::: gi|123 GDCVISKVLTFDLTKYPDANPNPNEQ 1210 1220 1230 >>gi|29336527|sp|Q9Z1M9.1|SMC1A_RAT RecName: Full=Struct (1233 aa) initn: 1535 init1: 1535 opt: 1535 Z-score: 1699.7 bits: 324.2 E(): 5.7e-86 Smith-Waterman score: 1535; 100.000% identity (100.000% similar) in 236 aa overlap (1-236:998-1233) 10 20 30 mKIAA0 EIKQEMNTLQQKLNEQQSVLQRIAAPNMKA :::::::::::::::::::::::::::::: gi|293 RTSSIYAREALIEIDYGDLCEDLKDAQAEEEIKQEMNTLQQKLNEQQSVLQRIAAPNMKA 970 980 990 1000 1010 1020 40 50 60 70 80 90 mKIAA0 MEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|293 MEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKA 1030 1040 1050 1060 1070 1080 100 110 120 130 140 150 mKIAA0 LSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|293 LSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY 1090 1100 1110 1120 1130 1140 160 170 180 190 200 210 mKIAA0 KPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGVYPEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|293 KPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGVYPEQ 1150 1160 1170 1180 1190 1200 220 230 mKIAA0 GDCVISKVLTFDLTKYPDANPNPNEQ :::::::::::::::::::::::::: gi|293 GDCVISKVLTFDLTKYPDANPNPNEQ 1210 1220 1230 >>gi|999380|gb|AAB34405.1| mitosis-specific chromosome s (1233 aa) initn: 1535 init1: 1535 opt: 1535 Z-score: 1699.7 bits: 324.2 E(): 5.7e-86 Smith-Waterman score: 1535; 100.000% identity (100.000% similar) in 236 aa overlap (1-236:998-1233) 10 20 30 mKIAA0 EIKQEMNTLQQKLNEQQSVLQRIAAPNMKA :::::::::::::::::::::::::::::: gi|999 RISSIYAREALIEIDYGDLCEDLKDAQAEEEIKQEMNTLQQKLNEQQSVLQRIAAPNMKA 970 980 990 1000 1010 1020 40 50 60 70 80 90 mKIAA0 MEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|999 MEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKA 1030 1040 1050 1060 1070 1080 100 110 120 130 140 150 mKIAA0 LSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|999 LSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY 1090 1100 1110 1120 1130 1140 160 170 180 190 200 210 mKIAA0 KPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGVYPEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|999 KPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGVYPEQ 1150 1160 1170 1180 1190 1200 220 230 mKIAA0 GDCVISKVLTFDLTKYPDANPNPNEQ :::::::::::::::::::::::::: gi|999 GDCVISKVLTFDLTKYPDANPNPNEQ 1210 1220 1230 >>gi|149031310|gb|EDL86308.1| structural maintenance of (1233 aa) initn: 1535 init1: 1535 opt: 1535 Z-score: 1699.7 bits: 324.2 E(): 5.7e-86 Smith-Waterman score: 1535; 100.000% identity (100.000% similar) in 236 aa overlap (1-236:998-1233) 10 20 30 mKIAA0 EIKQEMNTLQQKLNEQQSVLQRIAAPNMKA :::::::::::::::::::::::::::::: gi|149 RTSSIYAREALIEIDYGDLCEDLKDAQAEEEIKQEMNTLQQKLNEQQSVLQRIAAPNMKA 970 980 990 1000 1010 1020 40 50 60 70 80 90 mKIAA0 MEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 MEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKA 1030 1040 1050 1060 1070 1080 100 110 120 130 140 150 mKIAA0 LSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY 1090 1100 1110 1120 1130 1140 160 170 180 190 200 210 mKIAA0 KPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGVYPEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGVYPEQ 1150 1160 1170 1180 1190 1200 220 230 mKIAA0 GDCVISKVLTFDLTKYPDANPNPNEQ :::::::::::::::::::::::::: gi|149 GDCVISKVLTFDLTKYPDANPNPNEQ 1210 1220 1230 >>gi|29336595|sp|O97593.1|SMC1A_BOVIN RecName: Full=Stru (1233 aa) initn: 1535 init1: 1535 opt: 1535 Z-score: 1699.7 bits: 324.2 E(): 5.7e-86 Smith-Waterman score: 1535; 100.000% identity (100.000% similar) in 236 aa overlap (1-236:998-1233) 10 20 30 mKIAA0 EIKQEMNTLQQKLNEQQSVLQRIAAPNMKA :::::::::::::::::::::::::::::: gi|293 RTSNIYAREALIEIDYGDLCEDLKDAQAEEEIKQEMNTLQQKLNEQQSVLQRIAAPNMKA 970 980 990 1000 1010 1020 40 50 60 70 80 90 mKIAA0 MEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|293 MEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKA 1030 1040 1050 1060 1070 1080 100 110 120 130 140 150 mKIAA0 LSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|293 LSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSY 1090 1100 1110 1120 1130 1140 160 170 180 190 200 210 mKIAA0 KPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGVYPEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|293 KPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGVYPEQ 1150 1160 1170 1180 1190 1200 220 230 mKIAA0 GDCVISKVLTFDLTKYPDANPNPNEQ :::::::::::::::::::::::::: gi|293 GDCVISKVLTFDLTKYPDANPNPNEQ 1210 1220 1230 236 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 06:11:52 2009 done: Fri Mar 13 06:16:57 2009 Total Scan time: 720.160 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]