Comparison of KIAA cDNA sequences between mouse and human (KIAA1996)

<<Original sequence data>>

mouse  mKIAA1996 (msj10320)     length:   3006 bp, CDS:     3 -  1013
human   KIAA1996  (bj00079)     length:   3682 bp, CDS:   159 -  1472

In this page, the longest coding region predicted by GeneMark
was assigned as CDS for each of mouse and human KIAA cDNAs.
They were colored in green.  When the CDS positions were not identical
on the aligned sequences between mouse and human cDNAs, mouse cDNA
sequence was translated based on the human CDS information.
The amino acid sequence produced here may not be identical to the
protein sequence deduced (see Description).


<<Aligned sequence information>>

----------------------------------------------------------
            region      #match  #mismatch  %diff
----------------------------------------------------------
DNA

5'UTR:    412 -   413       2        0      0.0
  CDS:    414 -  1478     828      183      18.1
3'UTR:   1479 -  3742    1399      587      29.6

amino acid

  CDS:    414 -  1478     260       93      26.3
----------------------------------------------------------


<<Alignment>>

             1 ----+----*----+----*----+----*----+----*----+----* 50
msj10320     1 .................................................. 1
                                                                 
bj00079      1 ACCGGACAGGCCTTGTCCGGCAATACCAAGTTTCATGCAGGCTCTTGGGA 50

            51 ----+----*----+----*----+----*----+----*----+----* 100
msj10320     1 .................................................. 1
                                                                 
bj00079     51 AAGCTGGTGCTGCTGCTGCCTGATTCCCGCCGACAGACCTTGGGACCGGG 100

           101 ----+----*----+----*----+----*----+----*----+----* 150
msj10320     1 .................................................. 1
                                                                 
bj00079    101 GCCAACACTGGCAGCTGGAGATGGCGGACACGAGATCCGTGCACGAGACT 150

           151 ----+----*----+----*----+----*----+----*----+----* 200
msj10320     1 .................................................. 1
                                                                 
bj00079    151 AGGTTTGAGGCGGCCGTGAAGGTGATCCAGAGTTTGCCGAAGAATGGGAT 200
                       G  G  R  E  G  D  P  E  F  A  E  E  W  D  

           201 ----+----*----+----*----+----*----+----*----+----* 250
msj10320     1 .................................................. 1
                                                                 
bj00079    201 GCTTGGAGTTCACTGGGTGATATGACCAAAGAGGAAGCCATGATTGCATA 250
               A  W  S  S  L  G  D  M  T  K  E  E  A  M  I  A  Y 

           251 ----+----*----+----*----+----*----+----*----+----* 300
msj10320     1 .................................................. 1
                                                                 
bj00079    251 TGTTGAAGAAATGAAAAAGATTATTGAAACTATGCCAATGACTGAGAAAG 300
                V  E  E  M  K  K  I  I  E  T  M  P  M  T  E  K  V

           301 ----+----*----+----*----+----*----+----*----+----* 350
msj10320     1 .................................................. 1
                                                                 
bj00079    301 TTGAAGAATTGCTGCGTGTCATAGGTCCATTTTATGAAATTGTCGAGGAC 350
                 E  E  L  L  R  V  I  G  P  F  Y  E  I  V  E  D  

           351 ----+----*----+----*----+----*----+----*----+----* 400
msj10320     1 .................................................. 1
                                                                 
bj00079    351 AAAAAGAGTGGCAGGAGTTCTGATATAACCTCAGATCTTGGTAATGTTCT 400
               K  K  S  G  R  S  S  D  I  T  S  D  L  G  N  V  L 

           401 ----+----*----+----*----+----*----+----*----+----* 450
                            N  A  K  A  V  N  G  K  A  E  S  S  D
msj10320     1 ...........CAAATGCCAAAGCTGTTAATGGTAAAGCAGAGAGCAGTG 39
                          |||| |||||| | |||||||||||||| || |||||||
bj00079    401 CACTTCTACTCCAAACGCCAAAACCGTTAATGGTAAAGCTGAAAGCAGTG 450
                T  S  T  P  N  A  K  T  V  N  G  K  A  E  S  S  D

           451 ----+----*----+----*----+----*----+----*----+----* 500
                 S  G  A  E  S  E  E  E  E  A  Q  E  E  L  K  G  
msj10320    40 ATAGTGGGGCTGAGTCTGAAGAAGAAGAGGCCCAAGAAGAGTTAAAAGGA 89
               | ||||| || |||||||| ||||||||||||||||||||  | ||||||
bj00079    451 ACAGTGGAGCCGAGTCTGAGGAAGAAGAGGCCCAAGAAGAAGTGAAAGGA 500
                 S  G  A  E  S  E  E  E  E  A  Q  E  E  V  K  G  

           501 ----+----*----+----*----+----*----+----*----+----* 550
               A  E  Q  S  G     D  D  K  K  T  L  K  K  S  A  - 
msj10320    90 GCAGAACAGAGCGGCAGTGATGATAAGAAAACGCTGAAGAAATCAGCAG. 138
               |||||||| || |    | |||||||||||| | ||||||| ||||||| 
bj00079    501 GCAGAACAAAGTG...ATAATGATAAGAAAATGATGAAGAAGTCAGCAGA 547
               A  E  Q  S  D     N  D  K  K  M  M  K  K  S  A  D 

           551 ----+----*----+----*----+----*----+----*----+----* 600
                   K  N  L  E  I  I  V  T  N  G  -     K  G  S  F
msj10320   139 ..ATAAGAATTTGGAAATCATTGTTACCAATGGCT...ATAAAGGTAGCT 183
                 |||||||||||||| ||||||| || |||||||   |||||| | |||
bj00079    548 CCATAAGAATTTGGAAGTCATTGTCACTAATGGCTATGATAAAGATGGCT 597
                H  K  N  L  E  V  I  V  T  N  G  Y  D  K  D  G  F

           601 ----+----*----+----*----+----*----+----*----+----* 650
                 V  Q  D  I  Q  S  D  I  H  T  D  S  S  R  S  T  
msj10320   184 TTGTTCAGGATATACAGAGTGACATTCATACTGATTCTTCCCGGAGCACC 233
               |||||||||||||||||| |||||||||| |   |||||||| ||    |
bj00079    598 TTGTTCAGGATATACAGAATGACATTCATGCCAGTTCTTCCCTGAATGGC 647
                 V  Q  D  I  Q  N  D  I  H  A  S  S  S  L  N  G  

           651 ----+----*----+----*----+----*----+----*----+----* 700
               R  S  S  E  D  E  K  P  G  D  E  S  S  Q  Q  T  G 
msj10320   234 AGAAGCAGTGAAGATGAAAAGCCTGGAGATGAGAGCTCTCAGCAGACAGG 283
               ||||||| |||||| | |||||||   ||||| | ||    ||| || ||
bj00079    648 AGAAGCACTGAAGAAGTAAAGCCTATTGATGAAAACTTGGGGCAAACTGG 697
               R  S  T  E  E  V  K  P  I  D  E  N  L  G  Q  T  G 

           701 ----+----*----+----*----+----*----+----*----+----* 750
                H  T  I  V  C  A  H  Q  D  R  N  E  D  P  S  E  D
msj10320   284 ACACACCATTGTCTGTGCTCACCAAGATAGAAATGAAGATCCCAGTGAAG 333
               | |  |   ||| ||   ||||||||||| |||||| ||||    |||||
bj00079    698 AAAATCTGCTGTTTGCATTCACCAAGATATAAATGATGATCATGTTGAAG 747
                K  S  A  V  C  I  H  Q  D  I  N  D  D  H  V  E  D

           751 ----+----*----+----*----+----*----+----*----+----* 800
                 A  S  G  I  H  H  L  T  S  D  S  D  S  E  V  Y  
msj10320   334 ATGCTTCAGGAATACACCATTTAACAAGTGATTCAGATAGTGAAGTGTAC 383
               ||| | ||||||| || ||||| ||||| |||||||| |||||||| |||
bj00079    748 ATGTTACAGGAATTCAGCATTTGACAAGCGATTCAGACAGTGAAGTTTAC 797
                 V  T  G  I  Q  H  L  T  S  D  S  D  S  E  V  Y  

           801 ----+----*----+----*----+----*----+----*----+----* 850
               C  D  S  M  E  Q  F  G  Q  E  -                   
msj10320   384 TGTGACTCTATGGAGCAATTTGGACAAGAAG................... 414
               ||||| |||||||| ||||||||||||||||                   
bj00079    798 TGTGATTCTATGGAACAATTTGGACAAGAAGAGTCTTTAGACAGCTTTAC 847
               C  D  S  M  E  Q  F  G  Q  E  E  S  L  D  S  F  T 

           851 ----+----*----+----*----+----*----+----*----+----* 900
                                     Y  Y  L  G  G  D  P  T  Q  H
msj10320   415 ....................AGTATTATTTAGGTGGTGATCCTACTCAGC 444
                                   ||||||| || |||||| || | | ||| |
bj00079    848 GTCCAACAATGGACCATTTCAGTATTACTTGGGTGGTCATTCCAGTCAAC 897
                S  N  N  G  P  F  Q  Y  Y  L  G  G  H  S  S  Q  P

           901 ----+----*----+----*----+----*----+----*----+----* 950
                 L  E  S  S  G  F  C  E  D  A  Q  Q  S  P  G  N  
msj10320   445 ACTTGGAAAGTTCTGGTTTTTGTGAAGATGCTCAGCAATCTCCTGGAAAT 494
                | |||||| |||||| ||| ||||||||  |||   | |||||||||||
bj00079    898 CCATGGAAAATTCTGGATTTCGTGAAGATATTCAAGTACCTCCTGGAAAT 947
                 M  E  N  S  G  F  R  E  D  I  Q  V  P  P  G  N  

           951 ----+----*----+----*----+----*----+----*----+----* 1000
               G  S  I  G  K  M  W  M  V  A  V  K  G  K  G  E  V 
msj10320   495 GGCAGCATTGGGAAAATGTGGATGGTAGCAGTCAAAGGAAAAGGCGAAGT 544
               |||| ||||||||| |||  | |||| |||||  |||||||||| |||||
bj00079    948 GGCAACATTGGGAATATGCAGGTGGTTGCAGTTGAAGGAAAAGGTGAAGT 997
               G  N  I  G  N  M  Q  V  V  A  V  E  G  K  G  E  V 

          1001 ----+----*----+----*----+----*----+----*----+----* 1050
                K  H  G  G  E  D  G  R  S  S  S  G  A  P  H  R  E
msj10320   545 GAAACACGGAGGAGAAGATGGCAGAAGTAGCAGTGGAGCACCGCACCGTG 594
                || || ||||||||||||||||| | || ||| ||||| || ||||| |
bj00079    998 CAAGCATGGAGGAGAAGATGGCAGGAATAACAGCGGAGCGCCACACCGGG 1047
                K  H  G  G  E  D  G  R  N  N  S  G  A  P  H  R  E

          1051 ----+----*----+----*----+----*----+----*----+----* 1100
                 T  R  G  G  E  S  E  D  F  S  S  V  R  R  G  R  
msj10320   595 AGACGAGAGGTGGAGAGAGCGAGGACTTCTCCAGTGTCAGGAGAGGGAGA 644
               ||| | |||| ||||| |  || || ||||| | ||| || ||||| || 
bj00079   1048 AGAAGCGAGGCGGAGAAACTGATGAATTCTCTAATGTTAGAAGAGGAAG. 1096
                 K  R  G  G  E  T  D  E  F  S  N  V  R  R  G  R  

          1101 ----+----*----+----*----+----*----+----*----+----* 1150
                  G  N  R  I  P  H  L  S  E  G  P  K  G  R  Q  V 
msj10320   645 GTAGGGAATAGAATACCACATTTGAGCGAAGGACCCAAGGGTCGGCAAGT 694
                 |||  |||| || | ||| |||||||||||| ||||||| ||||| ||
bj00079   1097 ..AGGACATAGGATGCAACACTTGAGCGAAGGAACCAAGGGCCGGCAGGT 1144
                  G  H  R  M  Q  H  L  S  E  G  T  K  G  R  Q  V 

          1151 ----+----*----+----*----+----*----+----*----+----* 1200
                G  S  G  G  D  G  E  R  W  G  S  D  R  G  S  R  G
msj10320   695 AGGAAGTGGAGGTGATGGAGAACGCTGGGGCTCAGACCGGGGGTCCAGAG 744
                ||||||||||||||||| || ||||||||||| ||| | |||||| |||
bj00079   1145 GGGAAGTGGAGGTGATGGGGAGCGCTGGGGCTCCGACAGAGGGTCCCGAG 1194
                G  S  G  G  D  G  E  R  W  G  S  D  R  G  S  R  G

          1201 ----+----*----+----*----+----*----+----*----+----* 1250
                 S  L  N  E  Q  I  A  L  V  L  I  R  L  Q  E  D  
msj10320   745 GCAGCCTCAATGAGCAGATCGCTCTTGTGCTCATTAGATTGCAGGAGGAC 794
               |||||||||||||||||||||| || ||||| || ||| |||||||||||
bj00079   1195 GCAGCCTCAATGAGCAGATCGCCCTCGTGCTGATGAGACTGCAGGAGGAC 1244
                 S  L  N  E  Q  I  A  L  V  L  M  R  L  Q  E  D  

          1251 ----+----*----+----*----+----*----+----*----+----* 1300
               M  Q  N  V  L  Q  R  L  H  K  L  E  T  L  T  A  S 
msj10320   795 ATGCAGAATGTCCTTCAGAGACTTCATAAACTGGAAACACTAACTGCTTC 844
               ||||||||||||||||||||||| || ||||||||||| || ||||||| 
bj00079   1245 ATGCAGAATGTCCTTCAGAGACTGCAGAAACTGGAAACGCTGACTGCTTT 1294
               M  Q  N  V  L  Q  R  L  Q  K  L  E  T  L  T  A  L 

          1301 ----+----*----+----*----+----*----+----*----+----* 1350
                Q  A  K  L  -           L  Q  T  S  N  Q  P  S  S
msj10320   845 GCAGGCGAAATTAT.........CTTTGCAGACAAGTAATCAGCCCTCCT 885
               |||||| |||| ||         | ||||||||   |  ||||||| |||
bj00079   1295 GCAGGCAAAATCATCAACATCAACATTGCAGACTGCTCCTCAGCCCACCT 1344
                Q  A  K  S  S  T  S  T  L  Q  T  A  P  Q  P  T  S

          1351 ----+----*----+----*----+----*----+----*----+----* 1400
                 Q  R  P  A  W  W  P  F  E  M  S  P  G  A  L  A  
msj10320   886 CACAGAGACCAGCTTGGTGGCCCTTTGAGATGTCCCCTGGTGCATTAGCT 935
               ||||||||||| ||||||||||||| |||||||| |||||||   || | 
bj00079   1345 CACAGAGACCATCTTGGTGGCCCTTCGAGATGTCTCCTGGTGTGCTAACG 1394
                 Q  R  P  S  W  W  P  F  E  M  S  P  G  V  L  T  

          1401 ----+----*----+----*----+----*----+----*----+----* 1450
               F  A  I  I  W  P  F  I  A  Q  W  L  A  H  L  Y  Y 
msj10320   936 TTTGCTATTATATGGCCTTTTATTGCTCAGTGGTTGGCACATTTGTATTA 985
               ||||| || ||||||||||||||||| ||||||||||   |||| || ||
bj00079   1395 TTTGCCATCATATGGCCTTTTATTGCACAGTGGTTGGTGTATTTATACTA 1444
               F  A  I  I  W  P  F  I  A  Q  W  L  V  Y  L  Y  Y 

          1451 ----+----*----+----*----+----*----+----*----+----* 1500
                Q  R  R  R  R  K  L  N  *                        
msj10320   986 TCAAAGAAGGAGAAGAAAACTAAATTGAAG.AAATGGCTTTTTACTCAAG 1034
               ||||||||||||||||||||| || ||| | ||||||  |||| ||||||
bj00079   1445 TCAAAGAAGGAGAAGAAAACTGAACTGAGGAAAATGGTGTTTTCCTCAAG 1494
                Q  R  R  R  R  K  L  N  *                        

          1501 ----+----*----+----*----+----*----+----*----+----* 1550
msj10320  1035 AAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGTGGA 1084
               |||||| ||||  ||||| ||||| ||| | | ||||||      |||| 
bj00079   1495 AAGACTACTGGAACTGGATGACCTCAGA.ATGAACTGGA....TTGTGGT 1539

          1551 ----+----*----+----*----+----*----+----*----+----* 1600
msj10320  1085 ATTCAGAAGAAAATCTCAGTTT.TGATGATTACGTTGCTTTT..TTGTCC 1131
                |||| |||||||||| ||||| |||||||||| ||||||||  ||||||
bj00079   1540 GTTCACAAGAAAATCTTAGTTTGTGATGATTACATTGCTTTTTGTTGTCC 1589

          1601 ----+----*----+----*----+----*----+----*----+----* 1650
msj10320  1132 AGTAGTTTGGTT........TATATACATAAATATTCTTTGCACTACACA 1173
               |||||||| |||        |||||||| | ||||  |||||||||||||
bj00079   1590 AGTAGTTTAGTTTGTGTACATATATACACATATATATTTTGCACTACACA 1639

          1651 ----+----*----+----*----+----*----+----*----+----* 1700
msj10320  1174 AATGGTAACATTTTAAAGACTAATATTGCTGATACTTGAAAAATCAATCT 1223
               || | ||||||||||| ||||||||||||||||||||||| |||||||||
bj00079   1640 AACGATAACATTTTAAGGACTAATATTGCTGATACTTGAATAATCAATCT 1689

          1701 ----+----*----+----*----+----*----+----*----+----* 1750
msj10320  1224 CAACTAGATTTTAAGTAGCATCCATAGACTTACTCT..TTTTGAGCTTGA 1271
               | ||||| || ||||||| || || ||| |||| ||    |||| |||||
bj00079   1690 CTACTAGGTTATAAGTAGTATACACAGATTTACCCTGCCCTTGAACTTGA 1739

          1751 ----+----*----+----*----+----*----+----*----+----* 1800
msj10320  1272 AGGAC..TAAATTATTAATTATTGTTCAGTA..ATGATCACCTAATT.TT 1316
               |||||  |||||||||||| ||  ||  |||  ||| | |||| ||| | 
bj00079   1740 AGGACATTAAATTATTAATGATCATTTGGTAACATGTTTACCTGATTATC 1789

          1801 ----+----*----+----*----+----*----+----*----+----* 1850
msj10320  1317 TTCCATA.AGAATTATAAGCTGCATTTCTAAGGCATAGCTCCAATTATGA 1365
               ||||||| || |  ||||||||| |||| |||| |    |   || ||||
bj00079   1790 TTCCATAGAGTAACATAAGCTGCTTTTCAAAGGTACCATTGTGATAATGA 1839

          1851 ----+----*----+----*----+----*----+----*----+----* 1900
msj10320  1366 GATAAAATTTATA.......CTTTTTACTTTTCTAAATTAAACACAAGAA 1408
               ||| |||||||||        |||||| |||||||||||||| | |||||
bj00079   1840 GATCAAATTTATAAGTTATTATTTTTAATTTTCTAAATTAAATAAAAGAA 1889

          1901 ----+----*----+----*----+----*----+----*----+----* 1950
msj10320  1409 AGAATGCAAAAACAAAAGTGATTTTTTAAAAATGAGGTTAAATCGATTTT 1458
               ||||||| ||| ||  ||||| |||    ||||||| |  |||||| |||
bj00079   1890 AGAATGC.AAACCAGGAGTGAATTT...CAAATGAGATGTAATCGACTTT 1935

          1951 ----+----*----+----*----+----*----+----*----+----* 2000
msj10320  1459 GCATC..AGTCACTGAACTGTCA.GCTACGTGGCAGGAACCGGACGGAAG 1505
                 |||  |||||| ||  || || |  | || | || || |    |||||
bj00079   1936 ATATCTTAGTCACGGAGTTGCCATGGCATGTAGTAGAAAACCACAGGAAG 1985

          2001 ----+----*----+----*----+----*----+----*----+----* 2050
msj10320  1506 AATCCTCTCCAGGAGACTGGGCTTTAGTTAGTGGCTTGATTCCCC..... 1550
               |||  ||      |   || |   |    |    |||  ||   |     
bj00079   1986 AATGGTCATATTCACTTTGTGGGCTGCCCATAATCTTTCTTGGGCATTCA 2035

          2051 ----+----*----+----*----+----*----+----*----+----* 2100
msj10320  1551 ............GGCTTGCTCAGGGGAACTCAGAAAATCATCG...TCCT 1585
                               || |||||     | |  |||   | |    |  
bj00079   2036 CAACTCTTGAGTTTGGTGTTCAGGCATCATTATTAAAAAGTGGAGTCCTA 2085

          2101 ----+----*----+----*----+----*----+----*----+----* 2150
msj10320  1586 TGTACTGCGCT.TCTGTTTACAAACGATTCACTGAACAGACTTAACTTGA 1634
               |||||    ||   | |||||||| ||||  | |   |||| ||||    
bj00079   2086 TGTACCAGACTGAGTTTTTACAAATGATTTGCAGGCTAGACATAACCCAC 2135

          2151 ----+----*----+----*----+----*----+----*----+----* 2200
msj10320  1635 TGATGGAAATGATGAAAAACAGGCCTAATGTAGGTGTAAAAGTGTATTCA 1684
               ||||||||||| |||| ||   || | |||||||| ||||||||||||| 
bj00079   2136 TGATGGAAATGGTGAAGAATGAGCTTCATGTAGGTTTAAAAGTGTATTCT 2185

          2201 ----+----*----+----*----+----*----+----*----+----* 2250
msj10320  1685 AACTCTAGACACGGCTAATCAGATTTTAATTCAATCATACACACATAATC 1734
                |  ||  | | |  ||||||| |||| ||||||||||| | |  || ||
bj00079   2186 GAGCCTGTAGATGATTAATCAGGTTTTTATTCAATCATATAAATGTATTC 2235

          2251 ----+----*----+----*----+----*----+----*----+----* 2300
msj10320  1735 CTTTGTAATCATTTTTCTTTTAAGTGAGGATATCTACTGTCTGCTTCATA 1784
               ||||||||||||||||  ||||| |||||||||||| |||||||||||||
bj00079   2236 CTTTGTAATCATTTTT.GTTTAACTGAGGATATCTAGTGTCTGCTTCATA 2284

          2301 ----+----*----+----*----+----*----+----*----+----* 2350
msj10320  1785 GGGTGCTTTGCA..ATAAAATGAAAACGTATTTATACTGTTTTTACTAAG 1832
               |||||||||| |  ||||||||||||| |||||||||||||||||| |  
bj00079   2285 GGGTGCTTTGAAATATAAAATGAAAACTTATTTATACTGTTTTTACAACA 2334

          2351 ----+----*----+----*----+----*----+----*----+----* 2400
msj10320  1833 GTAACAAAAG.....CATGATAATCCTTTTTTTTGCAAGTGTAAAC..GA 1875
               || | ||| |     || || ||||  |||| |   |    | |||   |
bj00079   2335 GTCAAAAAGGAAACACACGAAAATCACTTTTCTGCAACTGATGAACTATA 2384

          2401 ----+----*----+----*----+----*----+----*----+----* 2450
msj10320  1876 CAGTCTGGACTCTTAACTTCTTAGTGCCTCAG.TTTTCCTTTGGGGTA.. 1922
                || ||||||||||||| |||||||||||||| |||||||| ||||||  
bj00079   2385 TAGACTGGACTCTTAACCTCTTAGTGCCTCAGTTTTTCCTTCGGGGTATA 2434

          2451 ----+----*----+----*----+----*----+----*----+----* 2500
msj10320  1923 ................TACTTCACAAG.GTATCAGAAGTACTTTCAGTCT 1955
                               ||||||||| | |||   || | | || ||  ||
bj00079   2435 CTATTTTAGATACACCTACTTCACAGGAGTACTGGAGGGATTTGCAAGCT 2484

          2501 ----+----*----+----*----+----*----+----*----+----* 2550
msj10320  1956 ACAGGTCTCTATG..TCCACATAACTAAGGAATGCCTAACTAATGGAAAC 2003
               |  || |   |||  |||| |  | ||||| ||||| | ||||  |||| 
bj00079   2485 AACGGGCCAAATGCTTCCATAGGAATAAGGCATGCCCAGCTAACAGAAAT 2534

          2551 ----+----*----+----*----+----*----+----*----+----* 2600
msj10320  2004 TTAAGTTCCT..........TCTAGCCATTAAAACAGAGAGAAGA..TCA 2041
               |||||| |||          |||  |   || | || | ||||||   ||
bj00079   2535 TTAAGTCCCTCTTCCCCACCTCTCTCATCTAGACCAAAAAGAAGACTACA 2584

          2601 ----+----*----+----*----+----*----+----*----+----* 2650
msj10320  2042 ATTTAGATCCCGGAACACTGTATTTGAAAAATAATCTTCCTGTGTACTTT 2091
               ||||||||||  | | ||                | ||||||| | | ||
bj00079   2585 ATTTAGATCCTTGGAGAC................TTTTCCTGTATGCCTT 2618

          2651 ----+----*----+----*----+----*----+----*----+----* 2700
msj10320  2092 CTCAAA...CCTGCGCTCAGTAATATACTTTATTCTTTGAAGATTTAATT 2138
               |  |||   ||||| | |    || ||| || | ||||||||||||  ||
bj00079   2619 CCAAAACTTCCTGCTCACTTAGATGTACCTTGTGCTTTGAAGATTTCTTT 2668

          2701 ----+----*----+----*----+----*----+----*----+----* 2750
msj10320  2139 TAAAAACTTCATAGAAAATCCTTTTTTGCTTTTCCTTTTGAG........ 2180
                |   | |   |  || |     ||||  ||||    | |||        
bj00079   2669 GATGCAGTCTTTGTAACAAATAATTTTTTTTTTTAAATGGAGTTTCTCTC 2718

          2751 ----+----*----+----*----+----*----+----*----+----* 2800
msj10320  2181 ......................ACAGAGTTTTGGTAGCTCCTACCAGCCT 2208
                                     |  | ||  |  | ||||    || | |
bj00079   2719 TTGTTGCCCAGGCTGGAGGGCAATGGCGTGATCTTGGCTCACTGCAACTT 2768

          2801 ----+----*----+----*----+----*----+----*----+----* 2850
msj10320  2209 CCA............................................... 2211
               |||                                               
bj00079   2769 CCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCACTCCCAAGTAGCTGGG 2818

          2851 ----+----*----+----*----+----*----+----*----+----* 2900
msj10320  2212 .................................................. 2212
                                                                 
bj00079   2819 ATTACAGGCATGCACCACCATGCCTGGCTAATTTTGTATTTTTAGTAGAG 2868

          2901 ----+----*----+----*----+----*----+----*----+----* 2950
msj10320  2212 ......ATTCTCTATGTAGCTGAAGATGACCTTGACTACC.......... 2245
                      ||||| |||| | | | | ||| ||  |   ||          
bj00079   2869 ACGGGGTTTCTCCATGTTGGTAAGGCTGATCTCAAACTCCCAACCTCAGG 2918

          2951 ----+----*----+----*----+----*----+----*----+----* 3000
msj10320  2246 TGAGTTTCCTGTCTCTACTTCTTTTCAGCTTCTGGGACCACAGGCCTGTA 2295
               |||  | |||| |||  |  ||    |  | ||||||  | |||| ||  
bj00079   2919 TGATCTGCCTGCCTCGGC..CTCCCAAAGTGCTGGGATTAGAGGCGTGAG 2966

          3001 ----+----*----+----*----+----*----+----*----+----* 3050
msj10320  2296 CCACCATGGCCAGCTTTAGAGAGTAAAACATTTTAATTTGTTCTTGATTT 2345
               ||||     |  || |     || |||  ||||| |    ||||  |  |
bj00079   2967 CCACTGCACCTGGCCT...GTAGCAAATAATTTTTAAGCATTCTCAAGAT 3013

          3051 ----+----*----+----*----+----*----+----*----+----* 3100
msj10320  2346 GTATGATGTTGGGGGCGTTAGCATTACGTGTTGAATATTTTGAGTAAGAA 2395
               |||||||||||||    ||| ||| |  |||| |   | ||   |||  |
bj00079   3014 GTATGATGTTGGG...TTTAACATCATATGTTCACAGTGTT..TTAAATA 3058

          3101 ----+----*----+----*----+----*----+----*----+----* 3150
msj10320  2396 GAAAAGAATCCATCTTCAGAATATAGGGTTGTTCTTTG...GGAAAAAGA 2442
                 ||| ||||  |||| || ||| ||| | ||||||||   |    || |
bj00079   3059 AGAAATAATCTGTCTTTAGTATACAGGATGGTTCTTTGTTTGCCTGAAAA 3108

          3151 ----+----*----+----*----+----*----+----*----+----* 3200
msj10320  2443 GTATAAGAACATAATTTCTTTGTCCTAGACTTTACAAATTTTTCAAAACT 2492
               ||||||||| | |||||  || ||| | ||| |      || |       
bj00079   3109 GTATAAGAATACAATTTACTTTTCCCAAACTCTTTTTCCTTATTTTTTTC 3158

          3201 ----+----*----+----*----+----*----+----*----+----* 3250
msj10320  2493 GTAACTTTATTTTAAACTTGTGTATCACAACTTGGTTGA......TATGC 2536
                |     ||  || || |  |  ||| ||   || || |      | || 
bj00079   3159 TTTCAAATAACTTTAATTATTTAATCCCATACTGATTAAAATATGTCTGT 3208

          3251 ----+----*----+----*----+----*----+----*----+----* 3300
msj10320  2537 CTAAAATGATCTACTGGCTTTTGCTTATGATTAAAAAACCTCAAATCTAT 2586
               |||||  ||||||||    |||||||              | |||    |
bj00079   3209 CTAAAGGGATCTACTACTATTTGCTT..............TTAAAAAAGT 3244

          3301 ----+----*----+----*----+----*----+----*----+----* 3350
msj10320  2587 CTTCTACATTTTAAAAGGAAGAAAAAAAAGCAAATAACTGAATTATTATA 2636
                |||   ||||    ||||| |||   ||||||  |||||||||  ||| 
bj00079   3245 GTTCCCTATTTATTTAGGAA.AAAGTGAAGCAAGCAACTGAATTTATATG 3293

          3351 ----+----*----+----*----+----*----+----*----+----* 3400
msj10320  2637 GAAAA.....CTTTAGACCTGTG....ACATTTTTTTGTTTTAAATTACA 2677
                ||||      ||||||||||||    | |  || || |   |||| | |
bj00079   3294 TAAAAATAACATTTAGACCTGTGGATCAAAGATTATTTTCAAAAATGAGA 3343

          3401 ----+----*----+----*----+----*----+----*----+----* 3450
msj10320  2678 AAAGAGGTTGGTATGATAAAGTGATGGCTTTTTTCT.......TATATAA 2720
                |  |  ||||||| |  ||    || ||||| |||       || ||||
bj00079   3344 TATCAATTTGGTATCAGTAAAAAGTGTCTTTTCTCTTAGTATATAAATAA 3393

          3451 ----+----*----+----*----+----*----+----*----+----* 3500
msj10320  2721 ATAGAATGCAAATCAAAGATATAACCAG.TGTGATTGATTGCAAGTAGTC 2769
               ||| ||||||||| ||   | ||| ||| ||||| | ||| |||| ||||
bj00079   3394 ATAAAATGCAAATTAAGAGTGTAAGCAGTTGTGAATCATTACAAGCAGTC 3443

          3501 ----+----*----+----*----+----*----+----*----+----* 3550
msj10320  2770 AAGTGTAACTAACTCCTAAGGGCAACCATTTGTATCTTATATATCAGAAT 2819
                 |  ||||||||||||| ||  |||||||| |||| | |     ||  |
bj00079   3444 TGGGATAACTAACTCCTAGGGATAACCATTTCTATCCTGTTCCAAAGTCT 3493

          3551 ----+----*----+----*----+----*----+----*----+----* 3600
msj10320  2820 TACTTTATAGTTTG.AAAGCACTTTGCACACATTTCCTGTATATA..... 2863
               || ||||||||||| ||||||||||||||||| ||| ||||||||     
bj00079   3494 TATTTTATAGTTTGAAAAGCACTTTGCACACAGTTCTTGTATATAAAAGT 3543

          3601 ----+----*----+----*----+----*----+----*----+----* 3650
msj10320  2864 AAGGATGTAATTACAGGATATAGTGGTAATGCAT..TAAAACATGAACCT 2911
               || |||||||||| ||||||||||| |  ||| |  |  || | ||||||
bj00079   3544 AAAGATGTAATTATAGGATATAGTGTTCCTGCTTTGTTTAATAAGAACCT 3593

          3651 ----+----*----+----*----+----*----+----*----+----* 3700
msj10320  2912 CATTTTAGAAATCGACAGCTATGGTATTTTTTTAATGAT..CAGCTTTTC 2959
               |||||   || | ||||||||||||||||||||||||||  |  ||||||
bj00079   3594 CATTT..AAACTTGACAGCTATGGTATTTTTTTAATGATAACTTCTTTTC 3641

          3701 ----+----*----+----*----+----*----+----*----+-- 3747
msj10320  2960 TGTTTATTGTAAAACTAAGTTAAAAAATAAAAGGTTAATGAGAAATG 3006
               ||||||||||||||||||||| ||||||||||||||||||||     
bj00079   3642 TGTTTATTGTAAAACTAAGTT.AAAAATAAAAGGTTAATGAG..... 3682