FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0153.ptfa, 404 aa vs ./tmplib.26680 library 1768613 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 3.6566+/-0.0042; mu= 21.3114+/- 0.281 mean_var=74.3064+/-17.327, 0's: 0 Z-trim: 3 B-trim: 103 in 1/35 Lambda= 0.1488 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0173 ( 934 res) mpf00222 ( 934) 149 41 0.00028 mKIAA0998 ( 1333 res) mbg00723 (1333) 129 37 0.0067 >>mKIAA0173 ( 934 res) mpf00222 (934 aa) initn: 146 init1: 76 opt: 149 Z-score: 169.1 bits: 41.4 E(): 0.00028 Smith-Waterman score: 188; 22.472% identity (26.059% ungapped) in 356 aa overlap (35-370:321-647) 10 20 30 40 50 60 mKIAA0 GEADPLIRKCMLLPWAPADMLDLSFSTPEPPAKYYQAILEENKEKLPLAISPVARPQGHV :. :. . .: :::: . : . . mKIAA0 NCVDLMSKSLPNHEKVVRPALIYSLFPNVTPTIYF-GTRDERVEKLPWEQRRLLRWKMST 300 310 320 330 340 70 80 90 100 110 120 mKIAA0 FRVHCDVQQVLGHLTHPRFTFTDSEADADIFFHFSHFKDYMKLSQESPQVLLNQFPCENL . :.:..:. .: : :. . : . ..: . . . ::.:: mKIAA0 VTPNI-VKQTIGR-SH----FKISKRNDDWLGCWGHHMKSPGFRSIREHQKLNHFPGSFQ 350 360 370 380 390 400 130 140 150 160 170 180 mKIAA0 LTVKD----CLASIARRAGGPEGPPWLPRTFNLRTELPQFVSYFQHRERRGEDNHWICKP . :: :. . : : : ..:..: : :: . ... . . ..:: :: mKIAA0 IGRKDRLWRNLSRMQSRFGKKEFS-FFPQSFIL----PQDSKLLRKAWESSSRQKWIVKP 410 420 430 440 450 190 200 210 220 230 240 mKIAA0 WNLARSLDTHVTNNLHSIIRHRESTPKVVSKYIESPVLFLREDVGNVKFDIRYIVLLRSV ::.. .: .. .. ..: : .:..:...: : ... :::.: : . : mKIAA0 PASARGIGIQVIHKWSQLPKRR---PLLVQRYLHKPYL-----ISGSKFDLRIYVYVTSY 460 470 480 490 500 510 250 260 270 280 290 mKIAA0 RPLRLFAYDVFWLRFSNRPFA--LDDLDDYEKHFTVMNYDPDVVLKQVHYNEFIPQFEKQ :::.. .. .::.. .. . .:.. :.: .. . . :.. .: : .: mKIAA0 DPLRIYLFSDGLVRFASCKYSPSMKSLSNKFMHLTNYSVNKKNTEYQANADETACQGHKW 520 530 540 550 560 570 300 310 320 330 340 mKIAA0 YPEFPW---------SDVQAEIFKAFTELFQVACAKPPPMGL----CDYP-SSRAMYAID . : ::. : .: . . . ..: .: : : . ....: mKIAA0 ALKALWNYLSQKGINSDAIWEKIKDVV-VKTIISSEPYVTNLLKLYVRRPYSCHELFGFD 580 590 600 610 620 350 360 370 380 390 400 mKIAA0 LMLNWDNHPDGKRVMQPQILEVNFNPDCERACRYHPSFFNDVFSTLFLDETDNCHVTRII .::. . ..: .::::..:. mKIAA0 IMLDEN--------LKPWVLEVNISPSLHSNSPLDISIKGQMIRDLLNLAGFVLPNMEDI 630 640 650 660 670 680 >>mKIAA0998 ( 1333 res) mbg00723 (1333 aa) initn: 115 init1: 79 opt: 129 Z-score: 144.4 bits: 37.3 E(): 0.0067 Smith-Waterman score: 213; 25.364% identity (31.071% ungapped) in 343 aa overlap (77-390:92-400) 50 60 70 80 90 100 mKIAA0 KEKLPLAISPVARPQGHVFRVHCDVQQVLGHLTHPRFTFTDSEADADIFFHFSHFKDYM- : .:: : .: .... ::.: .. mKIAA0 RVIGERYHLSYKIVRTDSRLVRSILTAHGFHEVHP------SSTDYNLMWTGSHLKPFLL 70 80 90 100 110 110 120 130 140 150 160 mKIAA0 KLSQESPQVLLNQFPCENLLTVKDCL-ASIAR--RAGGPEGPPWLPRTFNLRTELPQFVS . .:. .: :.:: :: :: : .: : .. : .. ::.:: : .: .: . mKIAA0 RTLSEAQKV--NHFPRSYELTRKDRLYKNIIRMQHTHGFKAFHILPQTFLLPAEYAEFCN 120 130 140 150 160 170 170 180 190 200 210 220 mKIAA0 YFQHRERRGEDNHWICKPWNLARSLDTHVTNNLHSIIRHRESTPKVVSKYIESPVLFLRE .. . :: :: :: .:. ... :: ..: .:. .::.::..:.: mKIAA0 SYS--KDRGP---WIVKPVASSRGRGVYLINNPNQI-SLEENI--LVSRYINNPLL---- 180 190 200 210 220 230 240 250 260 270 mKIAA0 DVGNVKFDIRYIVLLRSVRPLRLFAYDVFWLRFSNRPFALDDLDDYEKHFTVMNY----- . . :::.: ::. : :: .. :. ::.. . . . .. . . :: mKIAA0 -IDDFKFDVRLYVLVTSYDPLVIYLYEEGLARFATVRYDQGSKNIRNQFMHLTNYSVNKK 230 240 250 260 270 280 280 290 300 310 320 mKIAA0 --------DPDVVLKQVHYN-----EFIPQFEKQYPEFPWSDVQAEIFKAF--TEL-FQV ::.: ... ... : :. . . :. :.:.. .:: . . mKIAA0 SGDYVSCDDPEVEDYGNKWSMSAMLRYLKQEGKDTTAL-MAHVEDLIIKTIISAELAIAT 290 300 310 320 330 330 340 350 360 370 mKIAA0 ACAKPPPMGLCDYPSSRAMYAIDLMLNWDNHPDGKRVMQPQILEVNFNPD--CERA--CR :: : : .:..:... :: ...: .::::..:. :. . mKIAA0 ACKTFVPH----RSSCFELYGFDVLI--DN------TLKPWLLEVNLSPSLACDAPLDLK 340 350 360 370 380 380 390 400 mKIAA0 YHPSFFNDVFSTLFLDETDNCHVTRII . :...:.:... mKIAA0 IKASMISDMFTVVGFVCQDPAQRTSNRSIYPSFESSRRNPFQKPQRTRPLSASDAEMKNL 390 400 410 420 430 440 404 residues in 1 query sequences 1768613 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:13:18 2006 done: Mon Mar 27 10:13:19 2006 Scan time: 0.620 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]