FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0265.ptfa, 412 aa
 vs ./tmplib.26680 library

1768605 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.9261+/-0.00453; mu= 13.9376+/- 0.304
 mean_var=121.6983+/-28.413, 0's: 0 Z-trim: 8  B-trim: 125 in 1/35
 Lambda= 0.1163

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0817  ( 1399 res)   mbg09915                  (1399)  174   41 0.00064


>>mKIAA0817  ( 1399 res)   mbg09915                       (1399 aa)
 initn: 118 init1:  78 opt: 174  Z-score: 162.7  bits: 40.8 E(): 0.00064
Smith-Waterman score: 242;  25.000% identity (28.866% ungapped) in 336 aa overlap (43-363:158-463)

             20        30        40        50        60            
mKIAA0 RRRGGGAAGGASGVSGAGAAGGGRGTGQLNRFVQLSGRPHLPGHRPPPARSGHRCV---A
                                     :..:. .  .  :  : : :: :  .   :
mKIAA0 GPDATLWMFGGLGLPQGLLGNLYRYSVSERRWTQMLAGAEDGGPGPSP-RSFHAAAYVPA
       130       140       150       160       170        180      

      70        80        90       100       110       120         
mKIAA0 DNTNLYVFGGYNPDYDESGGPDNEDYPLFRELWRYHFATGVWHQMGTDGYMPRE-LASMS
           .:..:: .     .::       . :..:  ...:  :.:      :    .:. .
mKIAA0 GRGAMYLLGGLT-----AGG-------VTRDFWVLNLTTLQWRQEKPPQNMELPAVAGHT
        190            200              210       220       230    

      130        140       150       160         170       180     
mKIAA0 LVLH-GNNLLVFGGTGIPFGESNGNDVHVCNVKYKR--WALLSCRGKRPSRIYGQAMAL-
       :. . : .::. ::    ..  :: . .. . .     :.  .  :  :. .::.. .  
mKIAA0 LTARRGLSLLLVGG----YSPENGFNQQLLEYQLATGTWVSGAQSGTPPTGLYGHSAVYH
          240           250       260       270       280       290

           190       200           210       220       230         
mKIAA0 -INGSLYVFGGTTGYIY----STDLHKLDLNTMVWTQLKPNNLSCDLPEERYRHEIAHDG
         . :::::::   ..     : .:..:     .:. : :.. .   :. :  :  :  :
mKIAA0 EATDSLYVFGGFRFHVELAAPSPELYSLHCPDRTWSLLAPSQGAK--PRPRLFHASALLG
              300       310       320       330         340        

     240       250       260       270        280        290       
mKIAA0 QRIYILGGGTSWTAYSLNKIHAYNLETNAWEEIA-TKPHEKIGFPAARRC-HSCVQIKND
       . . .::: ..   .: . .  :... :.:   : :.:   .: :  .   :. . . . 
mKIAA0 DTMVVLGGRSDPDEFS-SDVLLYQVNCNTWLLPALTRPAF-VGSPMEESVAHAVAAVGSR
      350       360        370       380        390       400      

       300       310       320       330       340       350       
mKIAA0 VFICGGYNGEVILGDIWKLNLQTFQWVKLPATMPEPVYFHCAAVTPAGCMYIHGGVVNIH
       ..: ::..: : :: .  :.:       ::.  ::     :     ..: . ::. ..  
mKIAA0 LYISGGFGG-VALGRLLALTLPPDPCRLLPS--PEA----CNQ--SGACTWCHGACLSGD
        410        420       430             440         450       

       360       370       380       390       400       410       
mKIAA0 ENKRTGSLFKIWLVVPSLLELAWEKLLAAFPNLANLSRTQLLHLGLTQELIERLK     
       . .: :                                                      
mKIAA0 QAHRLGCGVPPCSPMPRSPEECRRLRTCSECLARHPRTLQPGDGEASIPRCKWCTNCPEG
       460       470       480       490       500       510       




412 residues in 1 query   sequences
1768605 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:16:08 2006 done: Mon Mar 27 10:16:09 2006
 Scan time:  0.610 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]