Comparison of KIAA cDNA sequences between mouse and human (FLJ00209)

<<Original sequence data>>

mouse  mFLJ00209 (msj09154)     length:   2554 bp, CDS:     1 -  2442
human     (sj05025)     length:   3975 bp, CDS:   949 -  2025

In this page, the longest coding region predicted by GeneMark
was assigned as CDS for each of mouse and human KIAA cDNAs.
They were colored in green.  When the CDS positions were not identical
on the aligned sequences between mouse and human cDNAs, mouse cDNA
sequence was translated based on the human CDS information.
The amino acid sequence produced here may not be identical to the
protein sequence deduced (see Description).


<<Aligned sequence information>>

----------------------------------------------------------
            region      #match  #mismatch  %diff
----------------------------------------------------------
DNA

5'UTR:     73 -   949     658      136      17.1
  CDS:    950 -  2069     862      216      20.0
3'UTR:   2070 -  4019     482      154      24.2

amino acid

  CDS:    950 -  2069     278       81      22.6
----------------------------------------------------------


<<Alignment>>

             1 ----+----*----+----*----+----*----+----*----+----* 50
msj09154     1 .................................................. 1
                                                                 
sj05025      1 GCCCCGCCCCTTTGGGCTGGAACCGGAGGTGTCGCTCTTCGGACCTCAAG 50

            51 ----+----*----+----*----+----*----+----*----+----* 100
msj09154     1 ......................CAGCAGTCCCTCGCGGAAGGC..TCCGG 26
                                     | ||||| | |||||||| ||  || ||
sj05025     51 GTTCCCCTTAACACAGAGCGCCCCGCAGT.CTTCGCGGAAAGCGTTCGGG 99

           101 ----+----*----+----*----+----*----+----*----+----* 150
msj09154    27 GAGAGCGATGGCGGCTACGCGTGTACAGCCCAGTACCCGGGAGATTTTCA 76
               |   |||||||| || ||||||| |  |||| |  |||| ||||| ||||
sj05025    100 GTAGGCGATGGCTGCGACGCGTGCAGGGCCCCGCGCCCGCGAGATCTTCA 149

           151 ----+----*----+----*----+----*----+----*----+----* 200
msj09154    77 CGACGCTGGAGTACGGACCGGTGCCGGAGAGCCACGCATGCGCACTGGCC 126
               |  |||||||||||||||||||||||||||||||||||||||||||||||
sj05025    150 CCTCGCTGGAGTACGGACCGGTGCCGGAGAGCCACGCATGCGCACTGGCC 199

           201 ----+----*----+----*----+----*----+----*----+----* 250
msj09154   127 TGGCTGGACACCCACAACCGCCTCTTGGGCCACCATGTCAATGGGATGTG 176
               ||||||||||||||  ||||   |||||||||| |||| ||||||| |||
sj05025    200 TGGCTGGACACCCAGGACCGGTGCTTGGGCCACTATGTGAATGGGAAGTG 249

           251 ----+----*----+----*----+----*----+----*----+----* 300
msj09154   177 GCTGAAGCCAGAACACAGGAATCCAGCGCCTTGCCAGGATCCCATCACAG 226
               | | ||||| |||||||| ||| ||| |||||||||||||||||||||||
sj05025    250 GTTAAAGCCTGAACACAGAAATTCAGTGCCTTGCCAGGATCCCATCACAG 299

           301 ----+----*----+----*----+----*----+----*----+----* 350
msj09154   227 GAGAAAACCTGGCCAGCTGCTTGCAAGCAGAGGCTGAGGACATCGCTGCA 276
               |||| ||| ||||||| ||| |||| ||| |||| |||||  | ||||||
sj05025    300 GAGAGAACTTGGCCAGTTGCCTGCAGGCACAGGCCGAGGATGTGGCTGCA 349

           351 ----+----*----+----*----+----*----+----*----+----* 400
msj09154   277 GCTGTGGAGGCTGCAAAGATAGCATTCAAGGCCTGGAGCCAACTCCCTGG 326
               || |||||||| || | ||| ||||| |||| ||||||    | ||| ||
sj05025    350 GCCGTGGAGGCAGCCAGGATGGCATTTAAGGGCTGGAGTGCGCACCCCGG 399

           401 ----+----*----+----*----+----*----+----*----+----* 450
msj09154   327 AGCTGCTCGGGGACAACACCTAACCCGGCTGGCCAAGGTCGTTCAGAAGC 376
                |  |  ||||  || ||||| ||| |||||||| ||||  | |||||||
sj05025    400 CGTCGTCCGGGCCCAGCACCTGACCAGGCTGGCCGAGGTGATCCAGAAGC 449

           451 ----+----*----+----*----+----*----+----*----+----* 500
msj09154   377 ACCAGCGACTGCTGTGGACCCTGGAATCCCTGGTCACTGGACGGGCTGTT 426
               ||||||| |||||||||||||||||||||||||| ||||| |||||||||
sj05025    450 ACCAGCGGCTGCTGTGGACCCTGGAATCCCTGGTGACTGGGCGGGCTGTT 499

           501 ----+----*----+----*----+----*----+----*----+----* 550
msj09154   427 CGAGAGGTTCGAGATGGAGATGTGCCACTGGCCCAGCAACTGCTCCAGTA 476
               |||||||||||||| || || || |  ||||||||||| |||||||| ||
sj05025    500 CGAGAGGTTCGAGACGGGGACGTCCAGCTGGCCCAGCAGCTGCTCCACTA 549

           551 ----+----*----+----*----+----*----+----*----+----* 600
msj09154   477 CCATGCAGTCCAGGCACATGCCCAGGGTGACGCACTGGCAGACTGGCAGC 526
               ||||||| ||||||||    ||||||  || |||||||||| |||| |||
sj05025    550 CCATGCAATCCAGGCATCCACCCAGGAGGAGGCACTGGCAGGCTGGGAGC 599

           601 ----+----*----+----*----+----*----+----*----+----* 650
msj09154   527 CCATGGGAGTCATTGGCCTCATCCTGCCGACTCCTTTCTCTTTCTTGGAC 576
               |||||||||| |||||||||||||||||  |  | ||||| ||| | || 
sj05025    600 CCATGGGAGTAATTGGCCTCATCCTGCCACCCACATTCTCCTTCCTTGAG 649

           651 ----+----*----+----*----+----*----+----*----+----* 700
msj09154   577 ATGATGTGGAGGATCTGCCCTGCCTTGGCTATGGGCTGCACCGTGGTGGC 626
               |||||||||||||| ||||||||| ||||| |||||||||||||||||||
sj05025    650 ATGATGTGGAGGATTTGCCCTGCCCTGGCTGTGGGCTGCACCGTGGTGGC 699

           701 ----+----*----+----*----+----*----+----*----+----* 750
msj09154   627 CCTCGTGCCCCCAGCCTTCCCGACACCTCTCCTCCTGGCTCAGCTGGCAG 676
               |||||||||||| |||| |||| | || ||||||||||| |||||||| |
sj05025    700 CCTCGTGCCCCCGGCCTCCCCGGCGCCCCTCCTCCTGGCCCAGCTGGCGG 749

           751 ----+----*----+----*----+----*----+----*----+----* 800
msj09154   677 GAGAGCTTGGCTCTTTCCCAGGGATCCTCAATGTGGTATGTGGCCCTGCC 726
               | ||||| ||| | ||||| || ||||| ||||| ||  |||||||||| 
sj05025    750 GGGAGCTGGGCCCCTTCCCGGGAATCCTGAATGTCGTCAGTGGCCCTGCG 799

           801 ----+----*----+----*----+----*----+----*----+----* 850
msj09154   727 TCGCTGGGGCCTGTCCTGGCCTCCCAACCTGGAGTCCAGAAGGTGGCTTT 776
               || |||| |||  ||||||||||||| |||||| ||| ||||||||| ||
sj05025    800 TCCCTGGTGCCCATCCTGGCCTCCCAGCCTGGAATCCGGAAGGTGGCCTT 849

           851 ----+----*----+----*----+----*----+----*----+----* 900
msj09154   777 CTGTGGAGCCGTGG.................................... 790
               ||| ||||||  ||                                    
sj05025    850 CTGCGGAGCCCCGGAGGTACCTTCGGGACAGGGGTCGTGGCGGAACGCGG 899

           901 ----+----*----+----*----+----*----+----*----+----* 950
                                                                E
msj09154   791 ...............................................AGG 793
                                                              |||
sj05025    900 CTGGGGGCCGCAAGGCTCCTCCTGCGGCTGAACTGGGGGGGGTCCCTAGG 949
                                                                E

           951 ----+----*----+----*----+----*----+----*----+----* 1000
                 G  R  V  L  R  R  T  L  A  G  R  G  A  E  L  G  
msj09154   794 AAGGACGTGTTCTGCGACGGACTCTAGCAGGCAGGGGAGCTGAGCTGGGC 843
               |||| ||||  || |||||||  || || ||   | | || |||||||||
sj05025    950 AAGGGCGTGCCCTTCGACGGAGCCTGGCGGGAGAGTGTGCGGAGCTGGGC 999
                 G  R  A  L  R  R  S  L  A  G  E  C  A  E  L  G  

          1001 ----+----*----+----*----+----*----+----*----+----* 1050
               L  A  L  G  T  E  S  L  L  L  L  T  D  S  A  D  V 
msj09154   844 CTGGCCCTGGGCACAGAGTCACTGTTGCTATTGACGGACTCCGCAGATGT 893
               ||||| ||||| || ||||| ||| ||||  |||||||| | || || ||
sj05025   1000 CTGGCGCTGGGGACGGAGTCGCTGCTGCTGCTGACGGACACGGCGGACGT 1049
               L  A  L  G  T  E  S  L  L  L  L  T  D  T  A  D  V 

          1051 ----+----*----+----*----+----*----+----*----+----* 1100
                D  S  A  V  E  G  V  V  D  A  V  W  S  D  R  S  L
msj09154   894 GGACTCAGCTGTGGAGGGTGTCGTGGATGCCGTCTGGTCAGACCGCAGCC 943
                ||||| || ||||||||||||||||| |||| |||||| |||||| |||
sj05025   1050 AGACTCGGCCGTGGAGGGTGTCGTGGACGCCGCCTGGTCCGACCGCGGCC 1099
                D  S  A  V  E  G  V  V  D  A  A  W  S  D  R  G  P

          1101 ----+----*----+----*----+----*----+----*----+----* 1150
                 G  G  L  R  L  L  I  Q  E  S  V  W  D  E  A  M  
msj09154   944 TGGGGGGGCTCAGGCTCCTCATCCAGGAATCTGTATGGGATGAAGCTATG 993
                ||| || |||||||||||||||||||| ||||| ||||||||||| |||
sj05025   1100 CGGGTGGCCTCAGGCTCCTCATCCAGGAGTCTGTGTGGGATGAAGCCATG 1149
                 G  G  L  R  L  L  I  Q  E  S  V  W  D  E  A  M  

          1151 ----+----*----+----*----+----*----+----*----+----* 1200
               R  R  L  Q  A  R  M  A  Q  I  R  S  G  R  G  L  D 
msj09154   994 AGGCGACTCCAGGCCAGAATGGCACAGATACGGAGTGGGAGAGGACTGGA 1043
               || || || ||||   | ||||  | | | ||||||||  |||| |||||
sj05025   1150 AGACGGCTGCAGGAGCGGATGGGGCGGCTTCGGAGTGGCCGAGGGCTGGA 1199
               R  R  L  Q  E  R  M  G  R  L  R  S  G  R  G  L  D 

          1201 ----+----*----+----*----+----*----+----*----+----* 1250
                G  A  V  D  M  G  A  R  G  A  A  A  R  D  L  A  Q
msj09154  1044 TGGGGCTGTGGACATGGGGGCTCGAGGAGCTGCTGCCCGAGACCTGGCCC 1093
               |||||| |||||||||||||| || || ||||| ||  | ||||||| ||
sj05025   1200 TGGGGCCGTGGACATGGGGGCCCGGGGGGCTGCCGCATGTGACCTGGTCC 1249
                G  A  V  D  M  G  A  R  G  A  A  A  C  D  L  V  Q

          1251 ----+----*----+----*----+----*----+----*----+----* 1300
                 S  F  V  D  E  A  Q  S  Q  G  G  Q  V  F  Q  A  
msj09154  1094 AGAGCTTTGTGGATGAGGCCCAAAGCCAAGGGGGACAGGTATTCCAAGCT 1143
               || ||||||||  ||||||||| ||||| || | |||||| ||||| |||
sj05025   1250 AGCGCTTTGTGCGTGAGGCCCAGAGCCAGGGTGCACAGGTGTTCCAGGCT 1299
                 R  F  V  R  E  A  Q  S  Q  G  A  Q  V  F  Q  A  

          1301 ----+----*----+----*----+----*----+----*----+----* 1350
               G  D  V  P  S  S  S  P  F  F  S  P  A  L  V  S  G 
msj09154  1144 GGTGATGTGCCCTCCAGTAGCCCATTTTTCTCTCCAGCCTTGGTTTCTGG 1193
               ||||||||||| ||     ||||||| |   | ||| ||||||| ||   
sj05025   1300 GGTGATGTGCCTTCGGAACGCCCATTCTATCCCCCAACCTTGGTCTCCAA 1349
               G  D  V  P  S  E  R  P  F  Y  P  P  T  L  V  S  N 

          1351 ----+----*----+----*----+----*----+----*----+----* 1400
                L  P  P  A  A  P  C  A  Q  A  E  V  P  W  P  V  V
msj09154  1194 TCTGCCTCCAGCAGCCCCATGTGCCCAGGCCGAGGTACCGTGGCCTGTGG 1243
                ||||| |||||  |||||||||||||||  ||||| |||||||||||||
sj05025   1350 CCTGCCCCCAGCCTCCCCATGTGCCCAGGTGGAGGTGCCGTGGCCTGTGG 1399
                L  P  P  A  S  P  C  A  Q  V  E  V  P  W  P  V  V

          1401 ----+----*----+----*----+----*----+----*----+----* 1450
                 M  A  S  P  F  R  T  V  K  E  A  L  A  L  A  N  
msj09154  1244 TTATGGCTTCTCCTTTCCGCACAGTCAAGGAGGCACTAGCCCTGGCCAAT 1293
               |  |||| || || |||||||||| ||||||||||||     ||||||| 
sj05025   1400 TCGTGGCCTCCCCCTTCCGCACAGCCAAGGAGGCACTGTTGGTGGCCAAC 1449
                 V  A  S  P  F  R  T  A  K  E  A  L  L  V  A  N  

          1451 ----+----*----+----*----+----*----+----*----+----* 1500
               G  T  P  R  G  G  S  A  S  V  W  S  E  R  L  G  Q 
msj09154  1294 GGAACACCCCGGGGAGGCAGCGCCAGCGTGTGGAGTGAAAGGCTAGGGCA 1343
               || || ||||| || ||||||||||| |||||||| || ||||| |||||
sj05025   1450 GGGACGCCCCGCGGGGGCAGCGCCAGTGTGTGGAGCGAGAGGCTGGGGCA 1499
               G  T  P  R  G  G  S  A  S  V  W  S  E  R  L  G  Q 

          1501 ----+----*----+----*----+----*----+----*----+----* 1550
                A  L  E  L  G  Y  G  L  Q  V  G  T  V  W  I  N  A
msj09154  1344 AGCCCTGGAGCTGGGCTATGGGCTCCAGGTGGGCACAGTGTGGATCAATG 1393
                || |||||||||||||||||||||||||||||||| || |||||||| |
sj05025   1500 GGCGCTGGAGCTGGGCTATGGGCTCCAGGTGGGCACTGTCTGGATCAACG 1549
                A  L  E  L  G  Y  G  L  Q  V  G  T  V  W  I  N  A

          1551 ----+----*----+----*----+----*----+----*----+----* 1600
                 H  G  L  R  D  P  A  V  P  T  G  G  C  K  E  S  
msj09154  1394 CTCATGGCCTCCGAGACCCTGCGGTGCCGACAGGGGGCTGCAAGGAGAGT 1443
               | || |||||| |||||||| ||||||| ||||| |||||||||||||||
sj05025   1550 CCCACGGCCTCAGAGACCCTTCGGTGCCCACAGGCGGCTGCAAGGAGAGT 1599
                 H  G  L  R  D  P  S  V  P  T  G  G  C  K  E  S  

          1601 ----+----*----+----*----+----*----+----*----+----* 1650
               G  S  S  W  H  G  G  P  D  G  L  Y  E  Y  L  Q  P 
msj09154  1444 GGGTCTTCCTGGCACGGAGGCCCAGATGGCCTGTATGAGTACCTGCAGCC 1493
               |||| |||||||||||| |||||||| || ||||||||||| |||| |||
sj05025   1600 GGGTGTTCCTGGCACGGGGGCCCAGACGGGCTGTATGAGTATCTGCGGCC 1649
               G  C  S  W  H  G  G  P  D  G  L  Y  E  Y  L  R  P 

          1651 ----+----*----+----*----+----*----+----*----+----* 1700
                L  G  T  P  S  Q  E  S  F  L  C  E  N  I  N  Y  D
msj09154  1494 CTTGGGGACACCTTCCCAGGAGTCCTTCCTTTGTGAGAATATCAACTATG 1543
               ||  ||||| ||| ||| |  ||||| ||| |   ||||  | |||||||
sj05025   1650 CTCAGGGACCCCTGCCCGGCTGTCCTGCCTCTCCAAGAACCTGAACTATG 1699
                S  G  T  P  A  R  L  S  C  L  S  K  N  L  N  Y  D

          1701 ----+----*----+----*----+----*----+----*----+----* 1750
                 T  F  G  L  A  A  S  S  I  L  P  S  G  P  E  T  
msj09154  1544 ACACATTTGGCCTTGCTGCGTCCTCCATTCTGCCGTCAGGGCCAGAAACA 1593
               |||| |||||||| |||| | |||| |  |||||| | ||||| |||| |
sj05025   1700 ACACCTTTGGCCTCGCTGTGCCCTCAACCCTGCCGGCTGGGCCTGAAATA 1749
                 T  F  G  L  A  V  P  S  T  L  P  A  G  P  E  I  

          1751 ----+----*----+----*----+----*----+----*----+----* 1800
               G  P                                             S
msj09154  1594 GGGCCTAGCCCAGCCCCTCCCTATGGGCTGTTTGTCGGAGGCCGTTTCCA 1643
               ||||                                           |||
sj05025   1750 GGGC...........................................CCA 1756
               G  P                                             R

          1801 ----+----*----+----*----+----*----+----*----+----* 1850
                 L  L  G  P  R  A  P  G  P  S  K  I  L  R  A  K  
msj09154  1644 GTCTCCTGGGACCCAGAGCTCCAGGCCCATCCAAGATTCTTCGGGCAAAG 1693
               | |||||||| |||  ||||||||||||||||  ||||| || |||||  
sj05025   1757 GGCTCCTGGGGCCCGAAGCTCCAGGCCCATCCGGGATTCGTCTGGCAATC 1806
                 L  L  G  P  E  A  P  G  P  S  G  I  R  L  A  I  

          1851 ----+----*----+----*----+----*----+----*----+----* 1900
               S  P  A  M  *  L  R  V  E  P  R  I  S  E  V  L  * 
msj09154  1694 TCTCCAGCTATGTAGCTGAGGGTGGAGCCAAGGATATCCGAGGTGCTGTA 1743
               ||    |||| || |||||||||||||||||||| |||||||||||||| 
sj05025   1807 TCCATGGCTACGTGGCTGAGGGTGGAGCCAAGGACATCCGAGGTGCTGTG 1856
               S  M  A  T  W  L  R  V  E  P  R  T  S  E  V  L  W 

          1901 ----+----*----+----*----+----*----+----*----+----* 1950
                R  L  L  I  R  L  P  L  A  G  E  P  S  P  Q  E  P
msj09154  1744 GAGGCTGCTCATCAGGCTGCCCCTGGCTGGGGAGCCCAGTCCCCAAGAGC 1793
               ||||| ||||| ||||||  |||||||||||  | |||||||||| ||||
sj05025   1857 GAGGCCGCTCACCAGGCTTTCCCTGGCTGGGCGGGCCAGTCCCCAGGAGC 1906
                R  P  L  T  R  L  S  L  A  G  R  A  S  P  Q  E  P

          1951 ----+----*----+----*----+----*----+----*----+----* 2000
                 E  Q  A  C  C  G  P  W  R  L  L  W  S  A  G  S  
msj09154  1794 CCGAGCAGGCCTGCTGTGGGCCCTGGCGGCTGCTCTGGAGCGCAGGAAGC 1843
               ||| |||| |||||||||||||||||||||||| ||||||||| ||||| 
sj05025   1907 CCGGGCAGCCCTGCTGTGGGCCCTGGCGGCTGCACTGGAGCGCCGGAAGT 1956
                 G  Q  P  C  C  G  P  W  R  L  H  W  S  A  G  S  

          2001 ----+----*----+----*----+----*----+----*----+----* 2050
               Q  C  *  P  H  N  *  K  G  T  E  Q  R  L  Q  L  P 
msj09154  1844 CAGTGCTGACCTCACAACTAGAAAGGCACGGAGCAGCGCCTACAGTTGCC 1893
               |    ||| ||||    || || ||||| ||||| | ||  |  | ||| 
sj05025   1957 CTACCCTGGCCTCGAGGCTGGAGAGGCAGGGAGCGGAGCTCAAGGCTGCG 2006
               L  P  W  P  R  G  W  R  G  R  E  R  S  S  R  L  R 

          2051 ----+----*----+----*----+----*----+----*----+----* 2100
                R  L  K  *  N  *                                 
msj09154  1894 AAGATTGAAGTAGAACTGAGTGTGAGGCGACTCCAGACATGGGGCACCCG 1943
                ||   || || || ||||| |  || ||||| | | | |||||  ||||
sj05025   2007 GAGGCGGAGGTGGAGCTGAGCGCAAGACGACTTCGGGCGTGGGGGGCCCG 2056
                R  R  R  W  S  *                                 

          2101 ----+----*----+----*----+----*----+----*----+----* 2150
msj09154  1944 GGTTCAGGACCAAGGCCAGACACTACAGGTAACAGGATTGAGAGGCCCTG 1993
               ||| |||| ||||||||| || || |||||| | ||  ||||||||||||
sj05025   2057 GGTGCAGGCCCAAGGCCACACCCTGCAGGTAGCCGGGCTGAGAGGCCCTG 2106

          2151 ----+----*----+----*----+----*----+----*----+----* 2200
msj09154  1994 TGCTCCGGCTTCGAGAACCATTGGGAGTGCTGGCCGTGGTGTGCCCGGAT 2043
               |||| || || || || ||  |||| |||||||| |||||||| ||||| 
sj05025   2107 TGCTGCGCCTGCGGGAGCCGCTGGGTGTGCTGGCTGTGGTGTGTCCGGAC 2156

          2201 ----+----*----+----*----+----*----+----*----+----* 2250
msj09154  2044 GAGTGGCCCCTGCTGGCTTTTGTGTCACTACTGGCCCCTGCACTGGCCCA 2093
               |||||||||||||| || || ||||| || ||||| || || |||||| |
sj05025   2157 GAGTGGCCCCTGCTTGCCTTCGTGTCCCTGCTGGCTCCCGCCCTGGCCTA 2206

          2251 ----+----*----+----*----+----*----+----*----+----* 2300
msj09154  2094 TGGCAATGCCGTGGTCTTAGTACCCAGTGGGGCATGTCCTCTGCTGGCCT 2143
                |||||  | |||||| | || ||||||| ||| ||||||||||||||| 
sj05025   2207 CGGCAACACTGTGGTCATGGTGCCCAGTGCGGCCTGTCCTCTGCTGGCCC 2256

          2301 ----+----*----+----*----+----*----+----*----+----* 2350
msj09154  2144 TGGAGGTCTGCCAGGATATAGCTCCTCTGTTTCCTGCTGGCCTGGTGAGT 2193
               |||||||||||||||| || ||  |  |||| || || |||||||  |  
sj05025   2257 TGGAGGTCTGCCAGGACATGGCCACCGTGTTCCCAGCAGGCCTGGCCAAC 2306

          2351 ----+----*----+----*----+----*----+----*----+----* 2400
msj09154  2194 GTAGTGACAGGGGATCGCGACCACCTGACCCGCTGTCTGGCCTTACATCA 2243
               || |||||||| || || ||||| ||||||||||| |||||||| || ||
sj05025   2307 GTGGTGACAGGAGACCGGGACCATCTGACCCGCTGCCTGGCCTTGCACCA 2356

          2401 ----+----*----+----*----+----*----+----*----+----* 2450
msj09154  2244 GGATGTCCAAGCCCTGTGGTACTTCGGCTCGGCC................ 2277
                || ||||| ||| ||||||| ||||| || |||                
sj05025   2357 AGACGTCCAGGCCATGTGGTATTTCGGATCAGCCCAGGTGCTCTTTGTTC 2406

          2451 ----+----*----+----*----+----*----+----*----+----* 2500
msj09154  2278 .................................................. 2278
                                                                 
sj05025   2407 TGTTTTGCCATCTTCAGCATCTCAAACTTCAAACAGGCTCCTCCTTTTCT 2456

          2501 ----+----*----+----*----+----*----+----*----+----* 2550
msj09154  2278 .................................................. 2278
                                                                 
sj05025   2457 GGAAACACAGCCCCGCCCTCTTAGAACTCCTGTTGGTAAGGGGAGAAACT 2506

          2551 ----+----*----+----*----+----*----+----*----+----* 2600
msj09154  2278 .................................................. 2278
                                                                 
sj05025   2507 CCTTGACAAGAAGGTTTTGAGGCCCCGCCCTTAGGACTCAAGTTACTAAG 2556

          2601 ----+----*----+----*----+----*----+----*----+----* 2650
msj09154  2278 .................................................. 2278
                                                                 
sj05025   2557 GAAGAGGCTGTCCTTAGCAACAGGGGCCTGAGAGCTGCCTAGCCCAAAGA 2606

          2651 ----+----*----+----*----+----*----+----*----+----* 2700
msj09154  2278 .................................................. 2278
                                                                 
sj05025   2607 CCTCGTCTCAGGGGACAGCCCGTTGCTAAGGACCACACCCTAGATTTGGA 2656

          2701 ----+----*----+----*----+----*----+----*----+----* 2750
msj09154  2278 .................................................. 2278
                                                                 
sj05025   2657 GGCCCACAGTCTACGCTTTGTTTTTCTATTTTGAGACAGAACCTCACCCT 2706

          2751 ----+----*----+----*----+----*----+----*----+----* 2800
msj09154  2278 .................................................. 2278
                                                                 
sj05025   2707 GTCACCCAGATGCAATCATACCTCACTGCAGCCGCAACCTCCCAGGCTCA 2756

          2801 ----+----*----+----*----+----*----+----*----+----* 2850
msj09154  2278 .................................................. 2278
                                                                 
sj05025   2757 AGCCACCGTCCCACCTCAGCTTCCTGAGTAGCTGGGACCACAGGCGTGCA 2806

          2851 ----+----*----+----*----+----*----+----*----+----* 2900
msj09154  2278 .................................................. 2278
                                                                 
sj05025   2807 CCACCATGCCCAGCTAATTTTTTTCTTTTGCAGAGACTGGGGTTTCTCTA 2856

          2901 ----+----*----+----*----+----*----+----*----+----* 2950
msj09154  2278 .................................................. 2278
                                                                 
sj05025   2857 TGTTGGCCAGGCTGATCTTGAACTCCTGGGCTCAAGTGATCTGCCCGCCT 2906

          2951 ----+----*----+----*----+----*----+----*----+----* 3000
msj09154  2278 .................................................. 2278
                                                                 
sj05025   2907 CGGCCTCTCAAAGTGCTGGGATTACAGGTGTGAGCCAGCACAACTGGTTG 2956

          3001 ----+----*----+----*----+----*----+----*----+----* 3050
msj09154  2278 .................................................. 2278
                                                                 
sj05025   2957 AGTCTACTGTTTTTTTTTTATTTTATTTTATTTTATTTTATTTTTCTGTC 3006

          3051 ----+----*----+----*----+----*----+----*----+----* 3100
msj09154  2278 .................................................. 2278
                                                                 
sj05025   3007 GCCCAGGCTGGAATACAGTGGCACGATCTTGGCTCACTGCAACCTCTGCC 3056

          3101 ----+----*----+----*----+----*----+----*----+----* 3150
msj09154  2278 .................................................. 2278
                                                                 
sj05025   3057 TCCCGGGTTCAAGTGATTCTCCTGCCTCCCAAGTAGCTGAGACTACAGGC 3106

          3151 ----+----*----+----*----+----*----+----*----+----* 3200
msj09154  2278 .................................................. 2278
                                                                 
sj05025   3107 ACTCACCGCCATGCCCAGCTAATTGTTGGGGGTTTTTTTTTAGTAGAGAT 3156

          3201 ----+----*----+----*----+----*----+----*----+----* 3250
msj09154  2278 .................................................. 2278
                                                                 
sj05025   3157 GGGGTTTCGCCATATTGGCCAGGCTGGTCTCGAACTCCTGACCTCGCGTG 3206

          3251 ----+----*----+----*----+----*----+----*----+----* 3300
msj09154  2278 .................................................. 2278
                                                                 
sj05025   3207 ATCTGCCTGCCTCAGCCTCCCAAAATGCTGAGATTACAGGCGTGAGCCAC 3256

          3301 ----+----*----+----*----+----*----+----*----+----* 3350
msj09154  2278 .................................................. 2278
                                                                 
sj05025   3257 TGTGCCCAACCAATTTTTACTTTTTAAATGGAGACGGGGTCTCGCCATAT 3306

          3351 ----+----*----+----*----+----*----+----*----+----* 3400
msj09154  2278 .................................................. 2278
                                                                 
sj05025   3307 TGTCCAGGCTGGTCTCAAACTCCTGAACTCAAGCGATCCTCCCGCCTCAG 3356

          3401 ----+----*----+----*----+----*----+----*----+----* 3450
msj09154  2278 .................................................. 2278
                                                                 
sj05025   3357 CCACCCCAAGTGCTGGGATTACAGGAGCGAGTCACCGCGCCCCACCGTCC 3406

          3451 ----+----*----+----*----+----*----+----*----+----* 3500
msj09154  2278 .................................................. 2278
                                                                 
sj05025   3407 ACTCTCTTAAACCTCCTGTTGGTAACAGATGTGAACTTGTTGACAAGAGC 3456

          3501 ----+----*----+----*----+----*----+----*----+----* 3550
msj09154  2278 .................................................. 2278
                                                                 
sj05025   3457 CTTGGGGCCCATTCCTTTCAACATGGGCTGTTAAGGGAGAGGAAATTCCC 3506

          3551 ----+----*----+----*----+----*----+----*----+----* 3600
msj09154  2278 .................................................. 2278
                                                                 
sj05025   3507 TAACCACTGGGTCCAGTGCTTTTCCCTACCATCTGGAAGTTCTGCTTGGG 3556

          3601 ----+----*----+----*----+----*----+----*----+----* 3650
msj09154  2278 .................................................. 2278
                                                                 
sj05025   3557 AGGAGCTGGGCATTGTAGCTGCAGAGCCTGGGTCCAGCCTGAAGCCCCTC 3606

          3651 ----+----*----+----*----+----*----+----*----+----* 3700
msj09154  2278 .................................................. 2278
                                                                 
sj05025   3607 GTCAGTAACAGTCTTCATCGCGGAGGAAGCAGGTGCTCAGCAACAAGCCT 3656

          3701 ----+----*----+----*----+----*----+----*----+----* 3750
msj09154  2278 .................................CAGGGCTCCCAGTTTGT 2294
                                                ||||| |||||||||||
sj05025   3657 GCAGAAGTGCTTACCCCCGTCTCTTCCTCCCCTCAGGGTTCCCAGTTTGT 3706

          3751 ----+----*----+----*----+----*----+----*----+----* 3800
msj09154  2295 GGAATGGGCCTCTGCAGGAAACCTCAAGTCTGTGTGGGTAAACAGGGGCT 2344
                || |||||||| ||||||||||||||  | |||||||  | ||||||||
sj05025   3707 CGAGTGGGCCTCGGCAGGAAACCTCAAACCGGTGTGGGCGAGCAGGGGCT 3756

          3801 ----+----*----+----*----+----*----+----*----+----* 3850
msj09154  2345 TCCCAAGGGCCTGGGATGTGGAGGTCCAGGGGGCAGGACAGGAGCTGAGT 2394
                |||  ||||||||||   ||||| | |||||||||| |  |||||| | 
sj05025   3757 GCCCGCGGGCCTGGGACCAGGAGGCCGAGGGGGCAGGCCCAGAGCTGGGG 3806

          3851 ----+----*----+----*----+----*----+----*----+----* 3900
msj09154  2395 CTTCACGCAGCACGAACAAAGGCCCTGTGGCTGCCAATGGGGGACTGATG 2444
               || |  |  || || || ||||||||||||||||| ||||||||||||||
sj05025   3807 CTGCGAGTGGCGCGGACCAAGGCCCTGTGGCTGCCTATGGGGGACTGATG 3856

          3901 ----+----*----+----*----+----*----+----*----+----* 3950
msj09154  2445 CCGAA..GCCACCCACTCCATCTTTGATGCTCAGGAGCACCAAGTG.... 2488
               ||  |  |||||| ||| ||| || ||  |     | ||    | |    
sj05025   3857 CCTGAGCGCCACCTACTGCATTTTGGACACCTCACACCAAGGGGAGATGC 3906

          3951 ----+----*----+----*----+----*----+----*----+----* 4000
msj09154  2489 ............CTTGGAACGTTTCTCTCAGATTTCCCATGGCTTCTAAT 2526
                           | ||| || || | ||     ||||  || || | |||
sj05025   3907 ACCCCACGGACACCTGGGACTTTCCCCTTCTGGTTCCTGTGTCTCCCAAT 3956

          4001 ----+----*----+----*----+--- 4028
msj09154  2527 AAACTGAGTGACTTTAACTGTGCATTTG 2554
               |||||   ||||     ||         
sj05025   3957 AAACTCTCTGACCAACCCT......... 3975