# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/msj09148.fasta.nr -Q ../query/mFLJ00406.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mFLJ00406, 217 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921382 sequences Expectation_n fit: rho(ln(x))= 4.6011+/-0.000178; mu= 10.8149+/- 0.010 mean_var=59.6868+/-11.698, 0's: 41 Z-trim: 42 B-trim: 0 in 0/66 Lambda= 0.166010 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|134034057|sp|Q3TYS2.2|CQ062_MOUSE RecName: Full ( 187) 1207 296.9 1.4e-78 gi|74152976|dbj|BAE34490.1| unnamed protein produc ( 187) 1201 295.4 3.8e-78 gi|81884556|sp|Q6AYA6.1|CQ062_RAT RecName: Full=Un ( 187) 1201 295.4 3.8e-78 gi|122140255|sp|Q3SZM3.1|CQ062_BOVIN RecName: Full ( 187) 1103 272.0 4.4e-71 gi|109119239|ref|XP_001113383.1| PREDICTED: hypoth ( 187) 1084 267.4 1e-69 gi|194216497|ref|XP_001914716.1| PREDICTED: simila ( 186) 1079 266.2 2.3e-69 gi|74732825|sp|Q9BQA9.1|CQ062_HUMAN RecName: Full= ( 187) 1076 265.5 3.9e-69 gi|90083901|dbj|BAE90901.1| unnamed protein produc ( 187) 1076 265.5 3.9e-69 gi|123230333|emb|CAM21740.1| novel protein [Mus mu ( 150) 970 240.0 1.4e-61 gi|126309472|ref|XP_001374378.1| PREDICTED: hypoth ( 190) 964 238.7 4.6e-61 gi|119610196|gb|EAW89790.1| chromosome 17 open rea ( 186) 948 234.8 6.5e-60 gi|114671179|ref|XP_511764.2| PREDICTED: hypotheti ( 237) 898 222.9 3.2e-56 gi|82179206|sp|Q5HZS2.1|CQ062_XENLA RecName: Full= ( 188) 858 213.3 2e-53 gi|123230334|emb|CAM21741.1| novel protein [Mus mu ( 132) 850 211.2 5.8e-53 gi|50757685|ref|XP_415607.1| PREDICTED: similar to ( 189) 844 209.9 2.1e-52 gi|123885229|sp|Q0D2D7.1|CQ062_XENTR RecName: Full ( 188) 835 207.8 9.2e-52 gi|119610192|gb|EAW89786.1| chromosome 17 open rea ( 173) 822 204.6 7.5e-51 gi|82183019|sp|Q6DGA7.1|CQ062_DANRE RecName: Full= ( 206) 744 186.0 3.6e-45 gi|189526440|ref|XP_001923618.1| PREDICTED: simila ( 206) 741 185.3 5.9e-45 gi|224074865|ref|XP_002187762.1| PREDICTED: hypoth ( 176) 673 169.0 4.2e-40 gi|47215782|emb|CAG02578.1| unnamed protein produc ( 163) 656 164.9 6.6e-39 gi|210091065|gb|EEA39326.1| hypothetical protein B ( 189) 515 131.1 1.1e-28 gi|210126233|gb|EEA73921.1| hypothetical protein B ( 284) 511 130.3 2.9e-28 gi|119610188|gb|EAW89782.1| chromosome 17 open rea ( 131) 477 121.9 4.5e-26 gi|72114956|ref|XP_788217.1| PREDICTED: hypothetic ( 203) 420 108.4 8.1e-22 gi|119610184|gb|EAW89778.1| chromosome 17 open rea ( 63) 321 84.3 4.6e-15 gi|74013281|ref|XP_850295.1| PREDICTED: hypothetic ( 104) 299 79.2 2.6e-13 gi|149055126|gb|EDM06943.1| hypothetical protein L ( 49) 269 71.8 2.1e-11 gi|119610195|gb|EAW89789.1| chromosome 17 open rea ( 80) 269 71.9 3.1e-11 gi|119610183|gb|EAW89777.1| chromosome 17 open rea ( 66) 183 51.3 4.2e-05 gi|119610187|gb|EAW89781.1| chromosome 17 open rea ( 78) 170 48.2 0.00041 >>gi|134034057|sp|Q3TYS2.2|CQ062_MOUSE RecName: Full=Unc (187 aa) initn: 1207 init1: 1207 opt: 1207 Z-score: 1567.2 bits: 296.9 E(): 1.4e-78 Smith-Waterman score: 1207; 100.000% identity (100.000% similar) in 187 aa overlap (31-217:1-187) 10 20 30 40 50 60 mFLJ00 WSLLVTEARGRLQLCFSKPGRLCSRAQVPRMYMQVETRTSTRLHLKRAPGIRSWSLLVGI :::::::::::::::::::::::::::::: gi|134 MYMQVETRTSTRLHLKRAPGIRSWSLLVGI 10 20 30 70 80 90 100 110 120 mFLJ00 LSTGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAIFNKNTGKVILKTFSLYKKLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 LSTGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAIFNKNTGKVILKTFSLYKKLL 40 50 60 70 80 90 130 140 150 160 170 180 mFLJ00 TLLRAGHDQVVVLLKDIQDVNVEEEKVRYFGKGYMVVLRFATGFSHPLTQSAVMGRRSDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 TLLRAGHDQVVVLLKDIQDVNVEEEKVRYFGKGYMVVLRFATGFSHPLTQSAVMGRRSDV 100 110 120 130 140 150 190 200 210 mFLJ00 EAIAKLITSFLELHRLESPSERSQSSDSEPDGPGGQS ::::::::::::::::::::::::::::::::::::: gi|134 EAIAKLITSFLELHRLESPSERSQSSDSEPDGPGGQS 160 170 180 >>gi|74152976|dbj|BAE34490.1| unnamed protein product [M (187 aa) initn: 1201 init1: 1201 opt: 1201 Z-score: 1559.4 bits: 295.4 E(): 3.8e-78 Smith-Waterman score: 1201; 99.465% identity (100.000% similar) in 187 aa overlap (31-217:1-187) 10 20 30 40 50 60 mFLJ00 WSLLVTEARGRLQLCFSKPGRLCSRAQVPRMYMQVETRTSTRLHLKRAPGIRSWSLLVGI :::::::::::::::::::::::::::::: gi|741 MYMQVETRTSTRLHLKRAPGIRSWSLLVGI 10 20 30 70 80 90 100 110 120 mFLJ00 LSTGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAIFNKNTGKVILKTFSLYKKLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LSTGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAIFNKNTGKVILKTFSLYKKLL 40 50 60 70 80 90 130 140 150 160 170 180 mFLJ00 TLLRAGHDQVVVLLKDIQDVNVEEEKVRYFGKGYMVVLRFATGFSHPLTQSAVMGRRSDV ::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::: gi|741 TLLRAGHDQVVVLLKDIQDVSVEEEKVRYFGKGYMVVLRFATGFSHPLTQSAVMGRRSDV 100 110 120 130 140 150 190 200 210 mFLJ00 EAIAKLITSFLELHRLESPSERSQSSDSEPDGPGGQS ::::::::::::::::::::::::::::::::::::: gi|741 EAIAKLITSFLELHRLESPSERSQSSDSEPDGPGGQS 160 170 180 >>gi|81884556|sp|Q6AYA6.1|CQ062_RAT RecName: Full=Unchar (187 aa) initn: 1201 init1: 1201 opt: 1201 Z-score: 1559.4 bits: 295.4 E(): 3.8e-78 Smith-Waterman score: 1201; 99.465% identity (100.000% similar) in 187 aa overlap (31-217:1-187) 10 20 30 40 50 60 mFLJ00 WSLLVTEARGRLQLCFSKPGRLCSRAQVPRMYMQVETRTSTRLHLKRAPGIRSWSLLVGI :::::::::::::::::::::::::::::: gi|818 MYMQVETRTSTRLHLKRAPGIRSWSLLVGI 10 20 30 70 80 90 100 110 120 mFLJ00 LSTGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAIFNKNTGKVILKTFSLYKKLL :::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::: gi|818 LSTGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAIFNKSTGKVILKTFSLYKKLL 40 50 60 70 80 90 130 140 150 160 170 180 mFLJ00 TLLRAGHDQVVVLLKDIQDVNVEEEKVRYFGKGYMVVLRFATGFSHPLTQSAVMGRRSDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 TLLRAGHDQVVVLLKDIQDVNVEEEKVRYFGKGYMVVLRFATGFSHPLTQSAVMGRRSDV 100 110 120 130 140 150 190 200 210 mFLJ00 EAIAKLITSFLELHRLESPSERSQSSDSEPDGPGGQS ::::::::::::::::::::::::::::::::::::: gi|818 EAIAKLITSFLELHRLESPSERSQSSDSEPDGPGGQS 160 170 180 >>gi|122140255|sp|Q3SZM3.1|CQ062_BOVIN RecName: Full=Unc (187 aa) initn: 1103 init1: 1103 opt: 1103 Z-score: 1432.5 bits: 272.0 E(): 4.4e-71 Smith-Waterman score: 1103; 90.909% identity (96.791% similar) in 187 aa overlap (31-217:1-187) 10 20 30 40 50 60 mFLJ00 WSLLVTEARGRLQLCFSKPGRLCSRAQVPRMYMQVETRTSTRLHLKRAPGIRSWSLLVGI ::::::::::.::::::::::::::::::: gi|122 MYMQVETRTSSRLHLKRAPGIRSWSLLVGI 10 20 30 70 80 90 100 110 120 mFLJ00 LSTGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAIFNKNTGKVILKTFSLYKKLL :: ::::::::::::::::::::::::::::::::::::::::.::::.:::::::.::: gi|122 LSIGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAIFNKSTGKVVLKTFSLYRKLL 40 50 60 70 80 90 130 140 150 160 170 180 mFLJ00 TLLRAGHDQVVVLLKDIQDVNVEEEKVRYFGKGYMVVLRFATGFSHPLTQSAVMGRRSDV :: :::::::::::.::.::::::::::::::::.::::::::::::::::::::.:::: gi|122 TLCRAGHDQVVVLLSDIRDVNVEEEKVRYFGKGYVVVLRFATGFSHPLTQSAVMGHRSDV 100 110 120 130 140 150 190 200 210 mFLJ00 EAIAKLITSFLELHRLESPSERSQSSDSEPDGPGGQS :.::::::.:::::::::: : ::::::: :.:: :: gi|122 EVIAKLITTFLELHRLESPVELSQSSDSEADSPGDQS 160 170 180 >>gi|109119239|ref|XP_001113383.1| PREDICTED: hypothetic (187 aa) initn: 1084 init1: 1084 opt: 1084 Z-score: 1408.0 bits: 267.4 E(): 1e-69 Smith-Waterman score: 1084; 89.305% identity (96.791% similar) in 187 aa overlap (31-217:1-187) 10 20 30 40 50 60 mFLJ00 WSLLVTEARGRLQLCFSKPGRLCSRAQVPRMYMQVETRTSTRLHLKRAPGIRSWSLLVGI ::.:::::::.::::::::::::::::::: gi|109 MYLQVETRTSSRLHLKRAPGIRSWSLLVGI 10 20 30 70 80 90 100 110 120 mFLJ00 LSTGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAIFNKNTGKVILKTFSLYKKLL :: ::::::::::::::::::::::::::::::::::::::.:.::::.::::::::::: gi|109 LSIGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAIFDKSTGKVVLKTFSLYKKLL 40 50 60 70 80 90 130 140 150 160 170 180 mFLJ00 TLLRAGHDQVVVLLKDIQDVNVEEEKVRYFGKGYMVVLRFATGFSHPLTQSAVMGRRSDV ::.:::::::::::.:..::.::::::::::::::::::.:::::::::::::::.:::: gi|109 TLFRAGHDQVVVLLHDVRDVSVEEEKVRYFGKGYMVVLRLATGFSHPLTQSAVMGHRSDV 100 110 120 130 140 150 190 200 210 mFLJ00 EAIAKLITSFLELHRLESPSERSQSSDSEPDGPGGQS :::::::::::::: ::::.: ::::::: ::.:: gi|109 EAIAKLITSFLELHCLESPTELSQSSDSEAGDPGSQS 160 170 180 >>gi|194216497|ref|XP_001914716.1| PREDICTED: similar to (186 aa) initn: 687 init1: 687 opt: 1079 Z-score: 1401.5 bits: 266.2 E(): 2.3e-69 Smith-Waterman score: 1079; 90.909% identity (95.722% similar) in 187 aa overlap (31-217:1-186) 10 20 30 40 50 60 mFLJ00 WSLLVTEARGRLQLCFSKPGRLCSRAQVPRMYMQVETRTSTRLHLKRAPGIRSWSLLVGI ::::::::::. :::::::::::::::::: gi|194 MYMQVETRTSSCLHLKRAPGIRSWSLLVGI 10 20 30 70 80 90 100 110 120 mFLJ00 LSTGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAIFNKNTGKVILKTFSLYKKLL :: ::::::::::::::::::::::::::::::::::::::::.::::.::::::::::: gi|194 LSIGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAIFNKSTGKVVLKTFSLYKKLL 40 50 60 70 80 90 130 140 150 160 170 180 mFLJ00 TLLRAGHDQVVVLLKDIQDVNVEEEKVRYFGKGYMVVLRFATGFSHPLTQSAVMGRRSDV :: :::::::::::.::.:::::: :::::::::.::::::::::::::::::::.:::: gi|194 TLSRAGHDQVVVLLNDIRDVNVEE-KVRYFGKGYVVVLRFATGFSHPLTQSAVMGHRSDV 100 110 120 130 140 190 200 210 mFLJ00 EAIAKLITSFLELHRLESPSERSQSSDSEPDGPGGQS ::::::::.:::::::::: : ::::::: ::: .:: gi|194 EAIAKLITAFLELHRLESPMELSQSSDSEADGPKSQS 150 160 170 180 >>gi|74732825|sp|Q9BQA9.1|CQ062_HUMAN RecName: Full=Unch (187 aa) initn: 1076 init1: 1076 opt: 1076 Z-score: 1397.6 bits: 265.5 E(): 3.9e-69 Smith-Waterman score: 1076; 88.770% identity (96.791% similar) in 187 aa overlap (31-217:1-187) 10 20 30 40 50 60 mFLJ00 WSLLVTEARGRLQLCFSKPGRLCSRAQVPRMYMQVETRTSTRLHLKRAPGIRSWSLLVGI ::.:::::::.::::::::::::::::::: gi|747 MYLQVETRTSSRLHLKRAPGIRSWSLLVGI 10 20 30 70 80 90 100 110 120 mFLJ00 LSTGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAIFNKNTGKVILKTFSLYKKLL :: ::::::::::::::::::::::::::::::::::::::.:.::::.::::::::::: gi|747 LSIGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAIFDKSTGKVVLKTFSLYKKLL 40 50 60 70 80 90 130 140 150 160 170 180 mFLJ00 TLLRAGHDQVVVLLKDIQDVNVEEEKVRYFGKGYMVVLRFATGFSHPLTQSAVMGRRSDV ::.:::::::::::.:..::.::::::::::::::::::.:::::::::::::::.:::: gi|747 TLFRAGHDQVVVLLHDVRDVSVEEEKVRYFGKGYMVVLRLATGFSHPLTQSAVMGHRSDV 100 110 120 130 140 150 190 200 210 mFLJ00 EAIAKLITSFLELHRLESPSERSQSSDSEPDGPGGQS :::::::::::::: ::::.: ::::::: :..:: gi|747 EAIAKLITSFLELHCLESPTELSQSSDSEAGDPASQS 160 170 180 >>gi|90083901|dbj|BAE90901.1| unnamed protein product [M (187 aa) initn: 1076 init1: 1076 opt: 1076 Z-score: 1397.6 bits: 265.5 E(): 3.9e-69 Smith-Waterman score: 1076; 88.770% identity (96.257% similar) in 187 aa overlap (31-217:1-187) 10 20 30 40 50 60 mFLJ00 WSLLVTEARGRLQLCFSKPGRLCSRAQVPRMYMQVETRTSTRLHLKRAPGIRSWSLLVGI ::.:::::::.::::::::::::: ::::: gi|900 MYLQVETRTSSRLHLKRAPGIRSWPLLVGI 10 20 30 70 80 90 100 110 120 mFLJ00 LSTGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAIFNKNTGKVILKTFSLYKKLL :: ::::::::::::::::::::::::::::::::::::::.:.::::.::::::::::: gi|900 LSIGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAIFDKSTGKVVLKTFSLYKKLL 40 50 60 70 80 90 130 140 150 160 170 180 mFLJ00 TLLRAGHDQVVVLLKDIQDVNVEEEKVRYFGKGYMVVLRFATGFSHPLTQSAVMGRRSDV ::.:::::::::::.:..::.::::::::::::::::::.:::::::::::::::.:::: gi|900 TLFRAGHDQVVVLLHDVRDVSVEEEKVRYFGKGYMVVLRLATGFSHPLTQSAVMGHRSDV 100 110 120 130 140 150 190 200 210 mFLJ00 EAIAKLITSFLELHRLESPSERSQSSDSEPDGPGGQS :::::::::::::: ::::.: ::::::: ::.:: gi|900 EAIAKLITSFLELHCLESPTELSQSSDSEAGYPGSQS 160 170 180 >>gi|123230333|emb|CAM21740.1| novel protein [Mus muscul (150 aa) initn: 970 init1: 970 opt: 970 Z-score: 1261.7 bits: 240.0 E(): 1.4e-61 Smith-Waterman score: 970; 100.000% identity (100.000% similar) in 150 aa overlap (31-180:1-150) 10 20 30 40 50 60 mFLJ00 WSLLVTEARGRLQLCFSKPGRLCSRAQVPRMYMQVETRTSTRLHLKRAPGIRSWSLLVGI :::::::::::::::::::::::::::::: gi|123 MYMQVETRTSTRLHLKRAPGIRSWSLLVGI 10 20 30 70 80 90 100 110 120 mFLJ00 LSTGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAIFNKNTGKVILKTFSLYKKLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 LSTGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAIFNKNTGKVILKTFSLYKKLL 40 50 60 70 80 90 130 140 150 160 170 180 mFLJ00 TLLRAGHDQVVVLLKDIQDVNVEEEKVRYFGKGYMVVLRFATGFSHPLTQSAVMGRRSDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 TLLRAGHDQVVVLLKDIQDVNVEEEKVRYFGKGYMVVLRFATGFSHPLTQSAVMGRRSDV 100 110 120 130 140 150 190 200 210 mFLJ00 EAIAKLITSFLELHRLESPSERSQSSDSEPDGPGGQS >>gi|126309472|ref|XP_001374378.1| PREDICTED: hypothetic (190 aa) initn: 986 init1: 964 opt: 964 Z-score: 1252.5 bits: 238.7 E(): 4.6e-61 Smith-Waterman score: 964; 83.240% identity (93.855% similar) in 179 aa overlap (31-209:1-179) 10 20 30 40 50 60 mFLJ00 WSLLVTEARGRLQLCFSKPGRLCSRAQVPRMYMQVETRTSTRLHLKRAPGIRSWSLLVGI :::::::::.. :::::.:::::::::::: gi|126 MYMQVETRTGSFLHLKRSPGIRSWSLLVGI 10 20 30 70 80 90 100 110 120 mFLJ00 LSTGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAIFNKNTGKVILKTFSLYKKLL :: ::::::::::.::::.::::::::::::::::::::.:.:::::::::::.::.:.: gi|126 LSIGLAAAYYSGDNLGWKFFYVTGCLFVAVQNLEDWEEALFDKNTGKVILKTFNLYRKIL 40 50 60 70 80 90 130 140 150 160 170 180 mFLJ00 TLLRAGHDQVVVLLKDIQDVNVEEEKVRYFGKGYMVVLRFATGFSHPLTQSAVMGRRSDV :. :: :.:::: ::::::::: ::::::::::: :.::::::::::::::::::.:::: gi|126 TVSRACHEQVVVGLKDIQDVNVIEEKVRYFGKGYTVILRFATGFSHPLTQSAVMGHRSDV 100 110 120 130 140 150 190 200 210 mFLJ00 EAIAKLITSFLELHRLESPSERSQSSDSEPDGPGGQS : ::::::.:::::. :: .. :::::.: gi|126 EIIAKLITNFLELHQPESLKDLSQSSDTEASDVDEPRHQD 160 170 180 190 217 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 10:07:46 2009 done: Fri Mar 13 10:12:40 2009 Total Scan time: 697.370 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]