FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mFLJ00168.ptfa, 631 aa
 vs ./tmplib.26680 library

1768386 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.0285+/-0.00421; mu= 20.1417+/- 0.282
 mean_var=87.6208+/-19.777, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1370

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0601  ( 879 res)   mbh00670                   ( 879)  200   50   1e-06


>>mKIAA0601  ( 879 res)   mbh00670                        (879 aa)
 initn: 321 init1: 166 opt: 200  Z-score: 213.0  bits: 50.1 E(): 1e-06
Smith-Waterman score: 293;  24.532% identity (31.441% ungapped) in 587 aa overlap (40-507:280-856)

      10        20        30        40        50              60   
mFLJ00 VLAATLLGLAGSLDWKAASSLNPIEKCMEDHDYEQLLKVVTLGLNRTSKP------QKVV
                                     :.: .   ....:. .  ::       ::.
mKIAA0 DNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPIKKTGKVI
     250       260       270       280       290       300         

            70        80        90       100       110             
mFLJ00 VVGAGVAGLVAAKMLSDAGHKVTILEADNRIGGRIFTFRDEKTGWIGELGAM--------
       ..:.::.::.::..:.. :  ::.::: .:.:::. :::  : .....::::        
mKIAA0 IIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFR--KGNYVADLGAMVVTGLGGN
     310       320       330       340         350       360       

                                                         120       
mFLJ00 ----------------------------RMPS--------------------SHR----I
                                    .:.                    ::.    .
mKIAA0 PMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNV
       370       380       390       400       410       420       

           130       140               150               160       
mFLJ00 LHKLCRTLGLNLTQFTQYDENT--------WTEVHNVK-----LRNYVV---EKMPEKLG
       :..   .::  :    : .:.         : .. ...     : : .:   ::. : : 
mKIAA0 LNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKE-LH
       430       440       450       460       470       480       

       170       180       190        200       210       220      
mFLJ00 YNLNNRERGHSPEDIYQMALNKA-FKDLKALGCKKAMNKFNKHTLLEYLLEEGNLSRPAV
        . ..  . . :.::    : :.  .:: :: ::.  .  . .  ::  :.: . . :. 
mKIAA0 QQYKEASEVKPPRDITAEFLVKSKHRDLTAL-CKEYDELAETQGKLEEKLQELEANPPSD
        490       500       510        520       530       540     

        230          240             250       260           270   
mFLJ00 QLLGD---VMSEEGFFYLSFAEALR------AHACLSDRLRYS----RIVGGWDLLPRAL
         :..    . .  :  : ::.:         :   .: ....     . .:.. .: ::
mKIAA0 VYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVAL
         550       560       570       580       590       600     

           280       290       300       310         320           
mFLJ00 LSSLSGALLLNAPVVSITQGRNDVRVHIATSLHSEKTL--TADVVLLTASGPALQR----
         .:.  . ::. : ..    .  .:  ...  . .:.    :.:: :    .:..    
mKIAA0 AEGLD--IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPA
         610         620       630       640       650       660   

       330       340       350       360       370         380     
mFLJ00 ITFSPPLTRKRQEALRALHYVAASKVFLSFRRPFWHEEHIEGGHSNTDRPSR--LIFYPA
       . : ::: . .  :.. . .   .:: : : : ::       :: ..   ::  :...  
mKIAA0 VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN
           670       680       690       700       710       720   

         390       400       410       420       430       440     
mFLJ00 QGEGSLLLASYTWSDAAAPFAGLSTDQTLRLVLQDVAALHGPVVFRLWDGRGVVKRWAED
         .. .:::  . ..::. . ..: :  .   :  . .. :  .      . ::.::  :
mKIAA0 LYKAPILLALVA-GEAAGIMENISDDVIVGRCLAILKGIFGSSAVP-QPKETVVSRWRAD
           730        740       750       760        770       780 

         450       460       470                     480        490
mFLJ00 PHSQGGFVVQPPLYGREAEDYDWSA--------------PFGRIYFAGEHTALPH-GWVE
       : ..:..       :  ..:::  :              :. :..::::::   . . :.
mKIAA0 PWARGSYSYVAA--GSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVH
             790         800       810       820       830         

              500       510       520       530       540       550
mFLJ00 TAVKSGLRAAVRINNNYGYGEVDPQMMEHAYAEANYLDQYPEGERPEEQQAREEVSPDEQ
        :. :::: : :: ...                                           
mKIAA0 GALLSGLREAGRIADQFLGAMYTLPRQATPGVPAQQSPSM                    
     840       850       860       870                             




631 residues in 1 query   sequences
1768386 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:07:40 2006 done: Mon Mar 27 10:07:41 2006
 Scan time:  0.780 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]