Comparison of KIAA cDNA sequences between mouse and human (FLJ00055)

<<Original sequence data>>

mouse  mFLJ00055 (msj09017)     length:   1962 bp, CDS:     3 -  1331
human     (as00055)     length:   4521 bp, CDS:     1 -  2934

In this page, the longest coding region predicted by GeneMark
was assigned as CDS for each of mouse and human KIAA cDNAs.
They were colored in green.  When the CDS positions were not identical
on the aligned sequences between mouse and human cDNAs, mouse cDNA
sequence was translated based on the human CDS information.
The amino acid sequence produced here may not be identical to the
protein sequence deduced (see Description).


<<Aligned sequence information>>

----------------------------------------------------------
            region      #match  #mismatch  %diff
----------------------------------------------------------
DNA

5'UTR:   1574 -  1575       1        1      50.0
  CDS:   1576 -  2940     997      322      24.4
3'UTR:   2941 -  3700     418      214      33.9

amino acid

  CDS:   1576 -  2940     313      140      30.9
----------------------------------------------------------


<<Alignment>>

             1 ----+----*----+----*----+----*----+----*----+----* 50
msj09017     1 .................................................. 1
                                                                 
as00055      1 CGGGAAGCTGCTGGCAGCCCTGCTAACTTCTCCTGGTTCCGAAATGGGGT 50
               R  E  A  A  G  S  P  A  N  F  S  W  F  R  N  G  V 

            51 ----+----*----+----*----+----*----+----*----+----* 100
msj09017     1 .................................................. 1
                                                                 
as00055     51 GCTGTGGGCCCAGGGTCCCCTGGAGACCGTGACACTGCTGCCCGTGGCCA 100
                L  W  A  Q  G  P  L  E  T  V  T  L  L  P  V  A  R

           101 ----+----*----+----*----+----*----+----*----+----* 150
msj09017     1 .................................................. 1
                                                                 
as00055    101 GAACTGATGCTGCCCTTTACGCCTGCCGCATCCTGACTGAGGCTGGTGCC 150
                 T  D  A  A  L  Y  A  C  R  I  L  T  E  A  G  A  

           151 ----+----*----+----*----+----*----+----*----+----* 200
msj09017     1 .................................................. 1
                                                                 
as00055    151 CAGCTCTCCACTCCCGTGCTCCTGAGTGTACTCTATCCCCCGGACCGTCC 200
               Q  L  S  T  P  V  L  L  S  V  L  Y  P  P  D  R  P 

           201 ----+----*----+----*----+----*----+----*----+----* 250
msj09017     1 .................................................. 1
                                                                 
as00055    201 AAAGCTGTCAGCCCTCCTAGACATGGGCCAGGGCCACATGGCTCTGTTCA 250
                K  L  S  A  L  L  D  M  G  Q  G  H  M  A  L  F  I

           251 ----+----*----+----*----+----*----+----*----+----* 300
msj09017     1 .................................................. 1
                                                                 
as00055    251 TCTGCACTGTGGACAGCCGCCCCCTGGCCTTGCTGGCCTTGTTCCATGGG 300
                 C  T  V  D  S  R  P  L  A  L  L  A  L  F  H  G  

           301 ----+----*----+----*----+----*----+----*----+----* 350
msj09017     1 .................................................. 1
                                                                 
as00055    301 GAGCACCTCCTGGCCACCAGCCTGGGTCCCCAGGTCCCATCCCATGGTCG 350
               E  H  L  L  A  T  S  L  G  P  Q  V  P  S  H  G  R 

           351 ----+----*----+----*----+----*----+----*----+----* 400
msj09017     1 .................................................. 1
                                                                 
as00055    351 GTTCCAGGCTAAGGCTGAGGCCAACTCCCTGAAGTTAGAGGTCCGAGAAC 400
                F  Q  A  K  A  E  A  N  S  L  K  L  E  V  R  E  L

           401 ----+----*----+----*----+----*----+----*----+----* 450
msj09017     1 .................................................. 1
                                                                 
as00055    401 TGGGCCTTGGGGACTCTGGCAGCTACCGCTGTGAGGCCACAAATGTTCTT 450
                 G  L  G  D  S  G  S  Y  R  C  E  A  T  N  V  L  

           451 ----+----*----+----*----+----*----+----*----+----* 500
msj09017     1 .................................................. 1
                                                                 
as00055    451 GGATCATCCAACACCTCACTCTTCTTCCAGGTCCGAGGAGCCTGGGTCCA 500
               G  S  S  N  T  S  L  F  F  Q  V  R  G  A  W  V  Q 

           501 ----+----*----+----*----+----*----+----*----+----* 550
msj09017     1 .................................................. 1
                                                                 
as00055    501 GGTGTCACCATCACCTGAGCTCCAAGAGGGCCAGGCTGTGGTCCTGAGCT 550
                V  S  P  S  P  E  L  Q  E  G  Q  A  V  V  L  S  C

           551 ----+----*----+----*----+----*----+----*----+----* 600
msj09017     1 .................................................. 1
                                                                 
as00055    551 GCCAGGTACACACAGGAGTCCCAGAGGGGACCTCATATCGTTGGTATCGG 600
                 Q  V  H  T  G  V  P  E  G  T  S  Y  R  W  Y  R  

           601 ----+----*----+----*----+----*----+----*----+----* 650
msj09017     1 .................................................. 1
                                                                 
as00055    601 GATGGCCAGCCCCTCCAGGAGTCGACCTCGGCCACGCTCCGCTTTGCAGC 650
               D  G  Q  P  L  Q  E  S  T  S  A  T  L  R  F  A  A 

           651 ----+----*----+----*----+----*----+----*----+----* 700
msj09017     1 .................................................. 1
                                                                 
as00055    651 CATAACTTTGACACAAGCTGGGGCCTATCATTGCCAAGCCCAGGCCCCAG 700
                I  T  L  T  Q  A  G  A  Y  H  C  Q  A  Q  A  P  G

           701 ----+----*----+----*----+----*----+----*----+----* 750
msj09017     1 .................................................. 1
                                                                 
as00055    701 GCTCAGCCACCACGAGCCTAGCTGCACCCATCAGCCTCCACGTGTCCTAT 750
                 S  A  T  T  S  L  A  A  P  I  S  L  H  V  S  Y  

           751 ----+----*----+----*----+----*----+----*----+----* 800
msj09017     1 .................................................. 1
                                                                 
as00055    751 GCCCCACGCCACGTCACACTCACTACCCTGATGGACACAGGCCCTGGACG 800
               A  P  R  H  V  T  L  T  T  L  M  D  T  G  P  G  R 

           801 ----+----*----+----*----+----*----+----*----+----* 850
msj09017     1 .................................................. 1
                                                                 
as00055    801 ACTGGGCCTCCTCCTGTGCCGTGTGGACAGTGACCCTCCGGCCCAGCTGC 850
                L  G  L  L  L  C  R  V  D  S  D  P  P  A  Q  L  R

           851 ----+----*----+----*----+----*----+----*----+----* 900
msj09017     1 .................................................. 1
                                                                 
as00055    851 GGCTGCTCCACGGGGATCGCCTTGTGGCCTCCACCCTACAAGGTGTGGGG 900
                 L  L  H  G  D  R  L  V  A  S  T  L  Q  G  V  G  

           901 ----+----*----+----*----+----*----+----*----+----* 950
msj09017     1 .................................................. 1
                                                                 
as00055    901 GGACCCGAAGGCAGCTCTCCCAGGCTGCATGTGGCTGTGGCCCCCAACAC 950
               G  P  E  G  S  S  P  R  L  H  V  A  V  A  P  N  T 

           951 ----+----*----+----*----+----*----+----*----+----* 1000
msj09017     1 .................................................. 1
                                                                 
as00055    951 ACTGCGTCTGGAGATCCACGGGGCTATGCTGGAGGATGAGGGTGTCTATA 1000
                L  R  L  E  I  H  G  A  M  L  E  D  E  G  V  Y  I

          1001 ----+----*----+----*----+----*----+----*----+----* 1050
msj09017     1 .................................................. 1
                                                                 
as00055   1001 TCTGTGAGGCCTCCAACACCCTGGGCCAGGCCTCGGCCTCAGCTGACTTC 1050
                 C  E  A  S  N  T  L  G  Q  A  S  A  S  A  D  F  

          1051 ----+----*----+----*----+----*----+----*----+----* 1100
msj09017     1 .................................................. 1
                                                                 
as00055   1051 GACGCTCAAGCTGTGAATGTGCAGGTGTGGCCCGGGGCTACCGTGCGGGA 1100
               D  A  Q  A  V  N  V  Q  V  W  P  G  A  T  V  R  E 

          1101 ----+----*----+----*----+----*----+----*----+----* 1150
msj09017     1 .................................................. 1
                                                                 
as00055   1101 GGGGCAGCTGGTGAACCTGACCTGCCTTGTGTGGACCACTCACCCGGCCC 1150
                G  Q  L  V  N  L  T  C  L  V  W  T  T  H  P  A  Q

          1151 ----+----*----+----*----+----*----+----*----+----* 1200
msj09017     1 .................................................. 1
                                                                 
as00055   1151 AGCTCACCTACACATGGTACCAGGATGGGCAGCAGCGCCTGGATGCCCAC 1200
                 L  T  Y  T  W  Y  Q  D  G  Q  Q  R  L  D  A  H  

          1201 ----+----*----+----*----+----*----+----*----+----* 1250
msj09017     1 .................................................. 1
                                                                 
as00055   1201 TCCATCCCCCTGCCCAACGTCACAGTCAGGGATGCCACCTCCTACCGCTG 1250
               S  I  P  L  P  N  V  T  V  R  D  A  T  S  Y  R  C 

          1251 ----+----*----+----*----+----*----+----*----+----* 1300
msj09017     1 .................................................. 1
                                                                 
as00055   1251 CGGTGTGGGCCCCCCTGGTCGGGCACCCCGCCTCTCCAGACCTATCACCT 1300
                G  V  G  P  P  G  R  A  P  R  L  S  R  P  I  T  L

          1301 ----+----*----+----*----+----*----+----*----+----* 1350
msj09017     1 .................................................. 1
                                                                 
as00055   1301 TGGACGTCCTCTACGCGCCCCGCAACCTGCGCCTGACCTACCTCCTGGAG 1350
                 D  V  L  Y  A  P  R  N  L  R  L  T  Y  L  L  E  

          1351 ----+----*----+----*----+----*----+----*----+----* 1400
msj09017     1 .................................................. 1
                                                                 
as00055   1351 AGCCATGGCGGGCAGCTGGCCCTGGTACTGTGCACTGTGGACAGCCGCCC 1400
               S  H  G  G  Q  L  A  L  V  L  C  T  V  D  S  R  P 

          1401 ----+----*----+----*----+----*----+----*----+----* 1450
msj09017     1 .................................................. 1
                                                                 
as00055   1401 GCCCGCCCAGCTGGCCCTCAGCCACGCCGGTCGCCTCTTGGCCTCCTCGA 1450
                P  A  Q  L  A  L  S  H  A  G  R  L  L  A  S  S  T

          1451 ----+----*----+----*----+----*----+----*----+----* 1500
msj09017     1 .................................................. 1
                                                                 
as00055   1451 CAGCAGCCTCTGTCCCCAACACCCTGCGCCTGGAGCTGCGAGGGCCACAG 1500
                 A  A  S  V  P  N  T  L  R  L  E  L  R  G  P  Q  

          1501 ----+----*----+----*----+----*----+----*----+----* 1550
msj09017     1 .................................................. 1
                                                                 
as00055   1501 CCCAGGGATGAGGGTTTCTACAGCTGCTCTGCCCGCAGCCCTCTGGGCCA 1550
               P  R  D  E  G  F  Y  S  C  S  A  R  S  P  L  G  Q 

          1551 ----+----*----+----*----+----*----+----*----+----* 1600
                                        L  E  G  V  R  V  K  M  N
msj09017     1 .......................TGCTGGAAGGTGTCCGAGTGAAAATGA 27
                                       |||||| ||||| || ||||   || 
as00055   1551 GGCCAACACGTCCCTGGAGCTGCGGCTGGAGGGTGTGCGGGTGATCCTGG 1600
                A  N  T  S  L  E  L  R  L  E  G  V  R  V  I  L  A

          1601 ----+----*----+----*----+----*----+----*----+----* 1650
                 P  S  G  S  V  P  E  G  E  P  V  T  V  T  C  E  
msj09017    28 ATCCCTCTGGTAGTGTACCCGAGGGAGAGCCTGTCACAGTGACCTGCGAG 77
                |||    | |   || || || || |  ||  ||||||||||||| | |
as00055   1601 CTCCGGAGGCTGCCGTGCCTGAAGGTGCCCCCATCACAGTGACCTGTGCG 1650
                 P  E  A  A  V  P  E  G  A  P  I  T  V  T  C  A  

          1651 ----+----*----+----*----+----*----+----*----+----* 1700
               D  P  A  A  L  S  S  A  L  Y  A  W  F  H  N  G  H 
msj09017    78 GACCCTGCTGCCCTCTCATCCGCCCTCTATGCCTGGTTTCACAATGGCCA 127
               ||||||||||||| | || || | |||||| | ||||  ||||| || | 
as00055   1651 GACCCTGCTGCCCACGCACCCACACTCTATACTTGGTACCACAACGGTCG 1700
               D  P  A  A  H  A  P  T  L  Y  T  W  Y  H  N  G  R 

          1701 ----+----*----+----*----+----*----+----*----+----* 1750
                W  L  Q  E  G  P  A  S  S  L  Q  F  L  V  T  T  R
msj09017   128 TTGGCTTCAGGAGGGACCGGCTTCCTCACTCCAGTTCCTGGTGACTACAC 177
               |||||| |||||||| || ||| ||||||||   ||||||||| | || |
as00055   1701 TTGGCTGCAGGAGGGTCCAGCTGCCTCACTCTCATTCCTGGTGGCCACGC 1750
                W  L  Q  E  G  P  A  A  S  L  S  F  L  V  A  T  R

          1751 ----+----*----+----*----+----*----+----*----+----* 1800
                 A  H  A  G  A  Y  F  C  Q  V  H  D  T  Q  G  T  
msj09017   178 GGGCTCACGCTGGTGCTTACTTTTGCCAGGTGCATGATACACAAGGCACA 227
               ||||||| || || || |||| ||||||||  || ||| | || ||||| 
as00055   1751 GGGCTCATGCAGGCGCCTACTCTTGCCAGGCCCAGGATGCCCAGGGCACC 1800
                 A  H  A  G  A  Y  S  C  Q  A  Q  D  A  Q  G  T  

          1801 ----+----*----+----*----+----*----+----*----+----* 1850
               R  S  S  R  P  A  S  L  Q  I  L  Y  A  P  R  D  A 
msj09017   228 CGGAGCTCCAGACCTGCCAGCCTGCAAATTCTCTATGCCCCCCGGGATGC 277
               || |||||| | |||||   ||||||| | ||||||||||| | ||| ||
as00055   1801 CGCAGCTCCCGTCCTGCTGCCCTGCAAGTCCTCTATGCCCCTCAGGACGC 1850
               R  S  S  R  P  A  A  L  Q  V  L  Y  A  P  Q  D  A 

          1851 ----+----*----+----*----+----*----+----*----+----* 1900
                V  L  S  S  F  R  D  S  R  T  R  L  M  V  V  I  Q
msj09017   278 TGTCCTGTCTTCCTTTCGAGACTCAAGGACCAGGCTCATGGTCGTGATTC 327
               ||||||||| ||||| || ||||| ||| ||||   |||||  ||||| |
as00055   1851 TGTCCTGTCCTCCTTCCGGGACTCCAGGGCCAGATCCATGGCTGTGATAC 1900
                V  L  S  S  F  R  D  S  R  A  R  S  M  A  V  I  Q

          1901 ----+----*----+----*----+----*----+----*----+----* 1950
                 C  T  V  D  S  E  P  P  A  E  M  V  L  S  H  N  
msj09017   328 AGTGCACCGTGGACAGTGAGCCACCTGCTGAGATGGTCCTATCCCACAAT 377
               ||||||| |||||||||||||||||||||||| ||| |||||| ||  ||
as00055   1901 AGTGCACTGTGGACAGTGAGCCACCTGCTGAGCTGGCCCTATCTCATGAT 1950
                 C  T  V  D  S  E  P  P  A  E  L  A  L  S  H  D  

          1951 ----+----*----+----*----+----*----+----*----+----* 2000
               G  K  V  L  A  A  S  H  E  R  H  S  S  A  S  G  I 
msj09017   378 GGCAAGGTGCTAGCTGCCAGCCACGAGCGTCACAGCTCAGCATCAGGGAT 427
               ||||||||||| ||  | |||  || |   |||||||  |||||||||| 
as00055   1951 GGCAAGGTGCTGGCCACGAGCAGCGGGGTCCACAGCTTGGCATCAGGGAC 2000
               G  K  V  L  A  T  S  S  G  V  H  S  L  A  S  G  T 

          2001 ----+----*----+----*----+----*----+----*----+----* 2050
                G  H  I  Q  V  A  R  N  A  L  R  L  Q  V  Q  D  V
msj09017   428 AGGCCACATCCAGGTAGCCCGAAATGCTCTTCGACTACAAGTGCAAGATG 477
               ||||||  ||||||| |||||||| || || || || || ||||||||||
as00055   2001 AGGCCATGTCCAGGTGGCCCGAAACGCCCTACGGCTGCAGGTGCAAGATG 2050
                G  H  V  Q  V  A  R  N  A  L  R  L  Q  V  Q  D  V

          2051 ----+----*----+----*----+----*----+----*----+----* 2100
                 T  L  G  D  D     T  Y  V  C  T  A  Q  N  T  L  
msj09017   478 TGACTCTGGGTGATGGCAACACCTATGTTTGCACAGCCCAGAATACACTG 527
               || ||   |||||||   |||||||||||||||||||||| ||    |||
as00055   2051 TGCCTGCAGGTGATG...ACACCTATGTTTGCACAGCCCAAAACTTGCTG 2097
                 P  A  G  D  D     T  Y  V  C  T  A  Q  N  L  L  

          2101 ----+----*----+----*----+----*----+----*----+----* 2150
               G  S  I  S  T  T  Q  R  L  L  T  D     D  I  R  V 
msj09017   528 GGCTCCATCAGTACCACCCAGAGGCTTCTGACGGAGACTGATATACGTGT 577
               ||||| ||||| |||| |  | || | | |   ||    | |  ||| ||
as00055   2098 GGCTCAATCAGCACCATCGGGCGGTTGCAGGTAGA...AGGTGCACGCGT 2144
               G  S  I  S  T  I  G  R  L  Q  V  E     G  A  R  V 

          2151 ----+----*----+----*----+----*----+----*----+----* 2200
                T  A  E  P  G  L  D  V  P  E  G  T  A  L  N  L  S
msj09017   578 GACAGCTGAGCCAGGCTTGGATGTGCCAGAGGGCACAGCTCTGAACTTAA 627
               |   || ||||| ||| |||| ||||| |||||| | || |||||| | |
as00055   2145 GGTGGCAGAGCCTGGCCTGGACGTGCCTGAGGGCGCTGCCCTGAACCTCA 2194
                V  A  E  P  G  L  D  V  P  E  G  A  A  L  N  L  S

          2201 ----+----*----+----*----+----*----+----*----+----* 2250
                 C  L  L  P  G  G  S  G  P  T  G  N  S  S  F  T  
msj09017   628 GCTGCCTCCTCCCTGGTGGCTCTGGGCCCACGGGCAACTCTTCCTTCACG 677
               |||||| |||||  |||||| |||||||   |||||||||  ||||  | 
as00055   2195 GCTGCCGCCTCCTGGGTGGCCCTGGGCCTGTGGGCAACTCCACCTTTGCA 2244
                 C  R  L  L  G  G  P  G  P  V  G  N  S  T  F  A  

          2251 ----+----*----+----*----+----*----+----*----+----* 2300
               W  F  W  N  R  H  R  L  H  S  A  P  V  P  T  L  S 
msj09017   678 TGGTTCTGGAATCGCCACCGACTACATTCAGCTCCTGTGCCCACACTCTC 727
               ||||||||||||  ||  || || ||  | |  ||||||||||| ||| |
as00055   2245 TGGTTCTGGAATGACCGGCGGCTGCACGCGGAGCCTGTGCCCACTCTCGC 2294
               W  F  W  N  D  R  R  L  H  A  E  P  V  P  T  L  A 

          2301 ----+----*----+----*----+----*----+----*----+----* 2350
                F  T  P  V  V  R  A  Q  A  G  L  Y  H  C  R  A  D
msj09017   728 CTTCACCCCTGTGGTCCGGGCTCAGGCTGGGCTGTACCACTGCAGGGCTG 777
               ||||||||  ||||  || ||||| |||||| |||||||||||  |||||
as00055   2295 CTTCACCCACGTGGCTCGTGCTCAAGCTGGGATGTACCACTGCCTGGCTG 2344
                F  T  H  V  A  R  A  Q  A  G  M  Y  H  C  L  A  E

          2351 ----+----*----+----*----+----*----+----*----+----* 2400
                 L  P  T  G  A  T  T  S  A  P  V  M  L  R  V  L  
msj09017   778 ATCTCCCCACCGGGGCCACTACCTCTGCTCCAGTTATGCTCCGTGTCCTC 827
               | |||||||| |||||  || ||||||||||||| ||||||||||| |||
as00055   2345 AGCTCCCCACTGGGGCTGCTGCCTCTGCTCCAGTCATGCTCCGTGTGCTC 2394
                 L  P  T  G  A  A  A  S  A  P  V  M  L  R  V  L  

          2401 ----+----*----+----*----+----*----+----*----+----* 2450
               Y  P  P  K  T  P  T  L  I  V  F  V  E  P  Q  G  G 
msj09017   828 TATCCCCCCAAGACGCCCACTCTCATAGTGTTTGTGGAGCCTCAGGGTGG 877
               || || ||||||||||||||  | || || || ||||||||| |||||||
as00055   2395 TACCCTCCCAAGACGCCCACCATGATGGTCTTCGTGGAGCCTGAGGGTGG 2444
               Y  P  P  K  T  P  T  M  M  V  F  V  E  P  E  G  G 

          2451 ----+----*----+----*----+----*----+----*----+----* 2500
                H  Q  G  I  L  D  C  R  V  D  S  E  P  L  A  I  L
msj09017   878 CCACCAGGGCATCCTCGACTGTCGAGTGGACAGTGAGCCCCTGGCCATCC 927
               || || ||||||||| || || ||||||||||| ||||| || |||| ||
as00055   2445 CCTCCGGGGCATCCTGGATTGCCGAGTGGACAGCGAGCCGCTCGCCAGCC 2494
                L  R  G  I  L  D  C  R  V  D  S  E  P  L  A  S  L

          2501 ----+----*----+----*----+----*----+----*----+----* 2550
                 T  L  H  R  G  S  Q  L  V  A  S  N  Q  L  H  D  
msj09017   928 TCACTCTTCACCGGGGCAGTCAACTAGTAGCCTCCAACCAACTTCACGAT 977
               | ||||| ||||  ||||||| ||| || |||||||  || |  || | |
as00055   2495 TGACTCTCCACCTTGGCAGTCGACTGGTGGCCTCCAGTCAGCCCCAGGGT 2544
                 T  L  H  L  G  S  R  L  V  A  S  S  Q  P  Q  G  

          2551 ----+----*----+----*----+----*----+----*----+----* 2600
               A  P  T  K  P  H  I  R  V  T  A  P  P  N  A  L  R 
msj09017   978 GCTCCCACCAAGCCCCACATCCGAGTCACTGCTCCTCCCAATGCCTTGAG 1027
               |||||  |  |||| |||||||  |||   ||| | ||||||||| ||||
as00055   2545 GCTCCTGCAGAGCCACACATCCATGTCCTGGCTTCCCCCAATGCCCTGAG 2594
               A  P  A  E  P  H  I  H  V  L  A  S  P  N  A  L  R 

          2601 ----+----*----+----*----+----*----+----*----+----* 2650
                V  D  I  E  E  L  G  P  S  N  Q  G  E  Y  V  C  T
msj09017  1028 AGTGGACATAGAGGAGCTCGGCCCTAGCAATCAAGGGGAGTATGTGTGCA 1077
                |||||||| |||| |||  | || ||| | |||||||| ||  | ||  
as00055   2595 GGTGGACATCGAGGCGCTGAGGCCCAGCGACCAAGGGGAATACATCTGTT 2644
                V  D  I  E  A  L  R  P  S  D  Q  G  E  Y  I  C  S

          2651 ----+----*----+----*----+----*----+----*----+----* 2700
                 A  S  N  T  L  G  S  A  S  A  S  A  Y  F  G  T  
msj09017  1078 CTGCCTCCAACACTCTGGGCTCTGCCTCAGCCTCTGCCTACTTTGGGACC 1127
               ||||||| ||    ||||||||||||||  ||||  |||||||||||  |
as00055   2645 CTGCCTCAAATGTCCTGGGCTCTGCCTCTACCTCCACCTACTTTGGGGTC 2694
                 A  S  N  V  L  G  S  A  S  T  S  T  Y  F  G  V  

          2701 ----+----*----+----*----+----*----+----*----+----* 2750
               R  A  L  H  Q  L  Q  L  F  Q  R  L  L  W  V  L  G 
msj09017  1128 AGAGCTCTGCACCAACTGCAGCTGTTCCAGAGGCTGCTCTGGGTCCTGGG 1177
               ||||| |||||||  ||||| | |||||||  ||||||||||||||||||
as00055   2695 AGAGCCCTGCACCGCCTGCATCAGTTCCAGCAGCTGCTCTGGGTCCTGGG 2744
               R  A  L  H  R  L  H  Q  F  Q  Q  L  L  W  V  L  G 

          2751 ----+----*----+----*----+----*----+----*----+----* 2800
                F  L  A  G  F  L  C  L  L  L  G  L  V  A  Y  H  T
msj09017  1178 ATTTCTGGCAGGCTTCCTGTGCCTGCTGCTGGGTCTGGTGGCCTATCACA 1227
               | | ||||  ||| |||||  ||||||| |||| |||| |||||   |||
as00055   2745 ACTGCTGGTGGGCCTCCTGCTCCTGCTGTTGGGCCTGGGGGCCTGCTACA 2794
                L  L  V  G  L  L  L  L  L  L  G  L  G  A  C  Y  T

          2801 ----+----*----+----*----+----*----+----*----+----* 2850
                 W  R  K  K  S  S  T  K  L  N  E  D  E  N  S  A  
msj09017  1228 CCTGGAGAAAGAAGAGTTCTACCAAGCTGAATGAGGATGAGAATTCAGCA 1277
               ||||||||| || | ||  |   |||| ||    ||  |||||||| |  
as00055   2795 CCTGGAGAAGGAGGCGTGTTTGTAAGCAGAGCATGGGCGAGAATTCGGTG 2844
                 W  R  R  R  R  V  C  K  Q  S  M  G  E  N  S  V  

          2851 ----+----*----+----*----+----*----+----*----+----* 2900
               E  M  A  T  K  K  N  T  I  Q  E  E  V  V  A  -    
msj09017  1278 GAGATGGCCACTAAGAAAAATACTATCCAGGAGGAAGTGGTTGCTGC... 1324
               ||||||||   | ||||| | || |  |||      |    || |||   
as00055   2845 GAGATGGCTTTTCAGAAAGAGACCACGCAGCTCATTGATCCTGATGCAGC 2894
               E  M  A  F  Q  K  E  T  T  Q  L  I  D  P  D  A  A 

          2901 ----+----*----+----*----+----*----+----*----+----* 2950
msj09017  1325 .................................................. 1325
                                                                 
as00055   2895 CACATGTGAGACCTCAACCTGTGCCCCACCCCTGGGCTGACCAGTGGTGT 2944
                T  C  E  T  S  T  C  A  P  P  L  G  *            

          2951 ----+----*----+----*----+----*----+----*----+----* 3000
msj09017  1325 ................................TCTCTGACAACTCAGGTG 1342
                                               ||| |||  ||||  |  
as00055   2945 TGCCTGCCCTCCGGAGGAGAAAGTGGCCAGAATCTGTGATGACTCCAG.C 2993

          3001 ----+----*----+----*----+----*----+----*----+----* 3050
msj09017  1343 CTGTGAACAAGA................TCCTGCCTACCTCTGTATAAGC 1376
               || ||||   ||                |||||||  |||||    || |
as00055   2994 CTATGAATGTGAATGAGGCAGTGTTGAGTCCTGCCCGCCTCTACGAAAAC 3043

          3051 ----+----*----+----*----+----*----+----*----+----* 3100
msj09017  1377 AGTACAGAGACATCTGGC.TTTCCTGACCTGCCCGACTTGCCTTCCAAGC 1425
               ||  | | |||||||| | |||  ||||||| ||          ||||||
as00055   3044 AGCTCTGTGACATCTGACTTTTTATGACCTGGCC..........CCAAGC 3083

          3101 ----+----*----+----*----+----*----+----*----+----* 3150
msj09017  1426 CTCTTGATCCTAAGAAAAATGGACGAAGGGAGGTTTGGGGTTGGAGGTCA 1475
               ||||||  ||    ||||||||  |  | ||||| ||     |  |||  
as00055   3084 CTCTTG.CCCCCCCAAAAATGGGTGGTGAGAGGTCTGCCCAGGAGGGT.. 3130

          3151 ----+----*----+----*----+----*----+----*----+----* 3200
msj09017  1476 ACCTGCCGCCTCCAGGGCTCTGAGACGGACTCAGC.CATGTTGCCCACGT 1524
                  |    |||  ||| | ||||   | ||| |||  || | || | |  
as00055   3131 ..GTTGACCCTGGAGGACACTGAAGAGCACTGAGCTGATCTCGCTCTCTC 3178

          3201 ----+----*----+----*----+----*----+----*----+----* 3250
msj09017  1525 CTCTCTGTGTGGTTTTCCTCTGTATCCCTTT................... 1555
                |||||| |   |  |||  | | ||| |||                   
as00055   3179 TTCTCTG.GATCTCCTCCCTTCTCTCCATTTCTCCCTCAAAGGAAGCCCT 3227

          3251 ----+----*----+----*----+----*----+----*----+----* 3300
msj09017  1556 ..........GCCTTTCTCTTCAAAGCTCACCTTGGACTTTCTTGGTGGG 1595
                           | ||||| || ||  ||||| |||||||  | | ||| 
as00055   3228 GCCCTTTCACATCCTTCTCCTCGAAAGTCACCCTGGACTT..TGGTTGGA 3275

          3301 ----+----*----+----*----+----*----+----*----+----* 3350
msj09017  1596 TTAGAGCAACATCCAGTTTCTCACAGACTTTCTAAGACGGTCTGTACCAG 1645
               ||  |||| | | ||  | |||| || ||  | ||| |  ||||||    
as00055   3276 TTGCAGCATCCTGCA..TCCTCAGAGGCTCACCAAGGCATTCTGTATTCA 3323

          3351 ----+----*----+----*----+----*----+----*----+----* 3400
msj09017  1646 CCAGGATATCAGTCAGGTTGCTCTAAC.AGAGACTCAATACAGTGACCAC 1694
                |||  ||||||||||  ||||||||| ||||||  |||||||||||  |
as00055   3324 ACAGAGTATCAGTCAGCCTGCTCTAACAAGAGACCAAATACAGTGACTTC 3373

          3401 ----+----*----+----*----+----*----+----*----+----* 3450
msj09017  1695 AGCATGACAGGGTCTTAGTTTTCCCTCCTGGCCT................ 1728
               | ||||| ||  | ||| ||||| ||||    ||                
as00055   3374 AACATGATAGAATTTTATTTTTCTCTCCCACGCTAGTCTGGCTGTTACGA 3423

          3451 ----+----*----+----*----+----*----+----*----+----* 3500
msj09017  1729 ..GGTTATGTTGTTGTGGTATCAGAATCCTTCTTGCTTGATTTTCTCCAT 1776
                 | ||||| ||||| ||  |||| ||||||||  |||  ||||||| ||
as00055   3424 TGGTTTATGATGTTG.GGGCTCAGGATCCTTCTATCTTCCTTTTCTCTAT 3472

          3501 ----+----*----+----*----+----*----+----*----+----* 3550
msj09017  1777 TCCCCAAGTGTTGCCTTTGATTATGAAGCT...CAGGTAACTGCAGTGCC 1823
                ||  || || ||||||||||| ||| |||   || |   | ||  || |
as00055   3473 CCCTAAAATGATGCCTTTGATTGTGAGGCTCACCATGGCCCCGCTTTGTC 3522

          3551 ----+----*----+----*----+----*----+----*----+----* 3600
msj09017  1824 CATGGACCCTACAG...GGAGAAGGAAGAGTGAAGGGA.AGACATACCCA 1869
               ||    |||| |||   | ||||||||||||| ||| | |  || |||||
as00055   3523 CACATGCCCTCCAGCCAGAAGAAGGAAGAGTGGAGGTAGAAGCACACCCA 3572

          3601 ----+----*----+----*----+----*----+----*----+----* 3650
msj09017  1870 TCCCCATGGTCCATGGACTGTGTGTGCAATTGCACCCCAC.......CCA 1912
               | ||||||||  | | |     |  | |  |||||   ||       |  
as00055   3573 TGCCCATGGTGGACGCA...ACTCAGAAGCTGCACAGGACTTTTCCACTC 3619

          3651 ----+----*----+----*----+----*----+----*----+----* 3700
msj09017  1913 ACTTCTCATCCGCTAGAAACTGGTCACATAAACATACCATGCTGAAAGGG 1962
               ||||| |||  ||| ||   | |||||||    |   || |||  |||||
as00055   3620 ACTTCCCATTGGCTGGAGTATTGTCACATGGCTACTGCAAGCTACAAGGG 3669

          3701 ----+----*----+----*----+----*----+----*----+----* 3750
msj09017  1963 .................................................. 1963
                                                                 
as00055   3670 AGACTGGGAAATGTAGTTTTTATTTTGAGTCCAGAGGACATTTGGAATTG 3719

          3751 ----+----*----+----*----+----*----+----*----+----* 3800
msj09017  1963 .................................................. 1963
                                                                 
as00055   3720 GACTTCCAAAGGACTCCCAACTGTGAGCTCATCCCTGAGACTTTTGACAT 3769

          3801 ----+----*----+----*----+----*----+----*----+----* 3850
msj09017  1963 .................................................. 1963
                                                                 
as00055   3770 TGTTGGGAATGCCACCAGCAGGCCATGTTTTGTCTCAGTGCCCATCTACT 3819

          3851 ----+----*----+----*----+----*----+----*----+----* 3900
msj09017  1963 .................................................. 1963
                                                                 
as00055   3820 GAGGGCCAGGGTGTGCCCCTGGCCATTCTGGTTGTGGGCTTCCTGGAAGA 3869

          3901 ----+----*----+----*----+----*----+----*----+----* 3950
msj09017  1963 .................................................. 1963
                                                                 
as00055   3870 GGTGATCACTCTCACACTAAGACTGAGGAAATAAAAAAGGTTTGGTGTTT 3919

          3951 ----+----*----+----*----+----*----+----*----+----* 4000
msj09017  1963 .................................................. 1963
                                                                 
as00055   3920 TCCTAGGGAGAGAGCATGCCAGGCAGTGGAGTTGCCTAAGCAGACATCCT 3969

          4001 ----+----*----+----*----+----*----+----*----+----* 4050
msj09017  1963 .................................................. 1963
                                                                 
as00055   3970 TGTGCCAGATTTGGCCCCTGAAAGAAGAGATGCCCTCATTCCCACCACCA 4019

          4051 ----+----*----+----*----+----*----+----*----+----* 4100
msj09017  1963 .................................................. 1963
                                                                 
as00055   4020 CCCCCCCTACCCCCAGGGACTGGGTACTACCTTACTGGCCCTTACAAGAG 4069

          4101 ----+----*----+----*----+----*----+----*----+----* 4150
msj09017  1963 .................................................. 1963
                                                                 
as00055   4070 TGGAGGGCAGACACAGATGTTGTCAGCATCCTTATTCCTGCTCCAGATGC 4119

          4151 ----+----*----+----*----+----*----+----*----+----* 4200
msj09017  1963 .................................................. 1963
                                                                 
as00055   4120 ATCTCTGTTCATGACTGTGTGAGCTCCTGTCCTTTTCCTGGAGACCCTGT 4169

          4201 ----+----*----+----*----+----*----+----*----+----* 4250
msj09017  1963 .................................................. 1963
                                                                 
as00055   4170 GTCGGGCTGTTAAAGAGAATGAGTTACCAAGAAGGAATGACGTGCCCCTG 4219

          4251 ----+----*----+----*----+----*----+----*----+----* 4300
msj09017  1963 .................................................. 1963
                                                                 
as00055   4220 CGAATCAGGGACCAACAGGAGAGAGCTCTTGAGTGGGCTAGTGACTCCCC 4269

          4301 ----+----*----+----*----+----*----+----*----+----* 4350
msj09017  1963 .................................................. 1963
                                                                 
as00055   4270 CTGCAGCCTGGTGGAGATGGTGTGAGGAGCGAAGAGCCCTCTGCTCTAGG 4319

          4351 ----+----*----+----*----+----*----+----*----+----* 4400
msj09017  1963 .................................................. 1963
                                                                 
as00055   4320 ATTTGGGTTGAAAAACAGAGAGAGAAGTGGGGAGTTGCCACAGGAGCTAA 4369

          4401 ----+----*----+----*----+----*----+----*----+----* 4450
msj09017  1963 .................................................. 1963
                                                                 
as00055   4370 CACGCTGGGAGGCAGTTGGGGGCGGGTGAACTTTGTGTAGCCGAGGCCGC 4419

          4451 ----+----*----+----*----+----*----+----*----+----* 4500
msj09017  1963 .................................................. 1963
                                                                 
as00055   4420 ACCCTCCCTCATTCCAGGCTCATTCATTTTCATGCTCCATTGCCAGACTC 4469

          4501 ----+----*----+----*----+----*----+----*----+----* 4550
msj09017  1963 .................................................. 1963
                                                                 
as00055   4470 TTGCTGGGAGCCCGTCCAGAATGTCCTCCCAATAAAACTCCATCCTATGA 4519

          4551 -- 4552
msj09017  1963 .. 1963
                 
as00055   4520 CG 4521