Comparison of KIAA cDNA sequences between mouse and human (FLJ00055)
<<Original sequence data>>
mouse mFLJ00055 (msj09017) length: 1962 bp, CDS: 3 - 1331
human (as00055) length: 4521 bp, CDS: 1 - 2934
In this page, the longest coding region predicted by GeneMark
was assigned as CDS for each of mouse and human KIAA cDNAs.
They were colored in green. When the CDS positions were not identical
on the aligned sequences between mouse and human cDNAs, mouse cDNA
sequence was translated based on the human CDS information.
The amino acid sequence produced here may not be identical to the
protein sequence deduced (see Description).
<<Aligned sequence information>>
----------------------------------------------------------
region #match #mismatch %diff
----------------------------------------------------------
DNA
5'UTR: 1574 - 1575 1 1 50.0
CDS: 1576 - 2940 997 322 24.4
3'UTR: 2941 - 3700 418 214 33.9
amino acid
CDS: 1576 - 2940 313 140 30.9
----------------------------------------------------------
<<Alignment>>
1 ----+----*----+----*----+----*----+----*----+----* 50
msj09017 1 .................................................. 1
as00055 1 CGGGAAGCTGCTGGCAGCCCTGCTAACTTCTCCTGGTTCCGAAATGGGGT 50
R E A A G S P A N F S W F R N G V
51 ----+----*----+----*----+----*----+----*----+----* 100
msj09017 1 .................................................. 1
as00055 51 GCTGTGGGCCCAGGGTCCCCTGGAGACCGTGACACTGCTGCCCGTGGCCA 100
L W A Q G P L E T V T L L P V A R
101 ----+----*----+----*----+----*----+----*----+----* 150
msj09017 1 .................................................. 1
as00055 101 GAACTGATGCTGCCCTTTACGCCTGCCGCATCCTGACTGAGGCTGGTGCC 150
T D A A L Y A C R I L T E A G A
151 ----+----*----+----*----+----*----+----*----+----* 200
msj09017 1 .................................................. 1
as00055 151 CAGCTCTCCACTCCCGTGCTCCTGAGTGTACTCTATCCCCCGGACCGTCC 200
Q L S T P V L L S V L Y P P D R P
201 ----+----*----+----*----+----*----+----*----+----* 250
msj09017 1 .................................................. 1
as00055 201 AAAGCTGTCAGCCCTCCTAGACATGGGCCAGGGCCACATGGCTCTGTTCA 250
K L S A L L D M G Q G H M A L F I
251 ----+----*----+----*----+----*----+----*----+----* 300
msj09017 1 .................................................. 1
as00055 251 TCTGCACTGTGGACAGCCGCCCCCTGGCCTTGCTGGCCTTGTTCCATGGG 300
C T V D S R P L A L L A L F H G
301 ----+----*----+----*----+----*----+----*----+----* 350
msj09017 1 .................................................. 1
as00055 301 GAGCACCTCCTGGCCACCAGCCTGGGTCCCCAGGTCCCATCCCATGGTCG 350
E H L L A T S L G P Q V P S H G R
351 ----+----*----+----*----+----*----+----*----+----* 400
msj09017 1 .................................................. 1
as00055 351 GTTCCAGGCTAAGGCTGAGGCCAACTCCCTGAAGTTAGAGGTCCGAGAAC 400
F Q A K A E A N S L K L E V R E L
401 ----+----*----+----*----+----*----+----*----+----* 450
msj09017 1 .................................................. 1
as00055 401 TGGGCCTTGGGGACTCTGGCAGCTACCGCTGTGAGGCCACAAATGTTCTT 450
G L G D S G S Y R C E A T N V L
451 ----+----*----+----*----+----*----+----*----+----* 500
msj09017 1 .................................................. 1
as00055 451 GGATCATCCAACACCTCACTCTTCTTCCAGGTCCGAGGAGCCTGGGTCCA 500
G S S N T S L F F Q V R G A W V Q
501 ----+----*----+----*----+----*----+----*----+----* 550
msj09017 1 .................................................. 1
as00055 501 GGTGTCACCATCACCTGAGCTCCAAGAGGGCCAGGCTGTGGTCCTGAGCT 550
V S P S P E L Q E G Q A V V L S C
551 ----+----*----+----*----+----*----+----*----+----* 600
msj09017 1 .................................................. 1
as00055 551 GCCAGGTACACACAGGAGTCCCAGAGGGGACCTCATATCGTTGGTATCGG 600
Q V H T G V P E G T S Y R W Y R
601 ----+----*----+----*----+----*----+----*----+----* 650
msj09017 1 .................................................. 1
as00055 601 GATGGCCAGCCCCTCCAGGAGTCGACCTCGGCCACGCTCCGCTTTGCAGC 650
D G Q P L Q E S T S A T L R F A A
651 ----+----*----+----*----+----*----+----*----+----* 700
msj09017 1 .................................................. 1
as00055 651 CATAACTTTGACACAAGCTGGGGCCTATCATTGCCAAGCCCAGGCCCCAG 700
I T L T Q A G A Y H C Q A Q A P G
701 ----+----*----+----*----+----*----+----*----+----* 750
msj09017 1 .................................................. 1
as00055 701 GCTCAGCCACCACGAGCCTAGCTGCACCCATCAGCCTCCACGTGTCCTAT 750
S A T T S L A A P I S L H V S Y
751 ----+----*----+----*----+----*----+----*----+----* 800
msj09017 1 .................................................. 1
as00055 751 GCCCCACGCCACGTCACACTCACTACCCTGATGGACACAGGCCCTGGACG 800
A P R H V T L T T L M D T G P G R
801 ----+----*----+----*----+----*----+----*----+----* 850
msj09017 1 .................................................. 1
as00055 801 ACTGGGCCTCCTCCTGTGCCGTGTGGACAGTGACCCTCCGGCCCAGCTGC 850
L G L L L C R V D S D P P A Q L R
851 ----+----*----+----*----+----*----+----*----+----* 900
msj09017 1 .................................................. 1
as00055 851 GGCTGCTCCACGGGGATCGCCTTGTGGCCTCCACCCTACAAGGTGTGGGG 900
L L H G D R L V A S T L Q G V G
901 ----+----*----+----*----+----*----+----*----+----* 950
msj09017 1 .................................................. 1
as00055 901 GGACCCGAAGGCAGCTCTCCCAGGCTGCATGTGGCTGTGGCCCCCAACAC 950
G P E G S S P R L H V A V A P N T
951 ----+----*----+----*----+----*----+----*----+----* 1000
msj09017 1 .................................................. 1
as00055 951 ACTGCGTCTGGAGATCCACGGGGCTATGCTGGAGGATGAGGGTGTCTATA 1000
L R L E I H G A M L E D E G V Y I
1001 ----+----*----+----*----+----*----+----*----+----* 1050
msj09017 1 .................................................. 1
as00055 1001 TCTGTGAGGCCTCCAACACCCTGGGCCAGGCCTCGGCCTCAGCTGACTTC 1050
C E A S N T L G Q A S A S A D F
1051 ----+----*----+----*----+----*----+----*----+----* 1100
msj09017 1 .................................................. 1
as00055 1051 GACGCTCAAGCTGTGAATGTGCAGGTGTGGCCCGGGGCTACCGTGCGGGA 1100
D A Q A V N V Q V W P G A T V R E
1101 ----+----*----+----*----+----*----+----*----+----* 1150
msj09017 1 .................................................. 1
as00055 1101 GGGGCAGCTGGTGAACCTGACCTGCCTTGTGTGGACCACTCACCCGGCCC 1150
G Q L V N L T C L V W T T H P A Q
1151 ----+----*----+----*----+----*----+----*----+----* 1200
msj09017 1 .................................................. 1
as00055 1151 AGCTCACCTACACATGGTACCAGGATGGGCAGCAGCGCCTGGATGCCCAC 1200
L T Y T W Y Q D G Q Q R L D A H
1201 ----+----*----+----*----+----*----+----*----+----* 1250
msj09017 1 .................................................. 1
as00055 1201 TCCATCCCCCTGCCCAACGTCACAGTCAGGGATGCCACCTCCTACCGCTG 1250
S I P L P N V T V R D A T S Y R C
1251 ----+----*----+----*----+----*----+----*----+----* 1300
msj09017 1 .................................................. 1
as00055 1251 CGGTGTGGGCCCCCCTGGTCGGGCACCCCGCCTCTCCAGACCTATCACCT 1300
G V G P P G R A P R L S R P I T L
1301 ----+----*----+----*----+----*----+----*----+----* 1350
msj09017 1 .................................................. 1
as00055 1301 TGGACGTCCTCTACGCGCCCCGCAACCTGCGCCTGACCTACCTCCTGGAG 1350
D V L Y A P R N L R L T Y L L E
1351 ----+----*----+----*----+----*----+----*----+----* 1400
msj09017 1 .................................................. 1
as00055 1351 AGCCATGGCGGGCAGCTGGCCCTGGTACTGTGCACTGTGGACAGCCGCCC 1400
S H G G Q L A L V L C T V D S R P
1401 ----+----*----+----*----+----*----+----*----+----* 1450
msj09017 1 .................................................. 1
as00055 1401 GCCCGCCCAGCTGGCCCTCAGCCACGCCGGTCGCCTCTTGGCCTCCTCGA 1450
P A Q L A L S H A G R L L A S S T
1451 ----+----*----+----*----+----*----+----*----+----* 1500
msj09017 1 .................................................. 1
as00055 1451 CAGCAGCCTCTGTCCCCAACACCCTGCGCCTGGAGCTGCGAGGGCCACAG 1500
A A S V P N T L R L E L R G P Q
1501 ----+----*----+----*----+----*----+----*----+----* 1550
msj09017 1 .................................................. 1
as00055 1501 CCCAGGGATGAGGGTTTCTACAGCTGCTCTGCCCGCAGCCCTCTGGGCCA 1550
P R D E G F Y S C S A R S P L G Q
1551 ----+----*----+----*----+----*----+----*----+----* 1600
L E G V R V K M N
msj09017 1 .......................TGCTGGAAGGTGTCCGAGTGAAAATGA 27
|||||| ||||| || |||| ||
as00055 1551 GGCCAACACGTCCCTGGAGCTGCGGCTGGAGGGTGTGCGGGTGATCCTGG 1600
A N T S L E L R L E G V R V I L A
1601 ----+----*----+----*----+----*----+----*----+----* 1650
P S G S V P E G E P V T V T C E
msj09017 28 ATCCCTCTGGTAGTGTACCCGAGGGAGAGCCTGTCACAGTGACCTGCGAG 77
||| | | || || || || | || ||||||||||||| | |
as00055 1601 CTCCGGAGGCTGCCGTGCCTGAAGGTGCCCCCATCACAGTGACCTGTGCG 1650
P E A A V P E G A P I T V T C A
1651 ----+----*----+----*----+----*----+----*----+----* 1700
D P A A L S S A L Y A W F H N G H
msj09017 78 GACCCTGCTGCCCTCTCATCCGCCCTCTATGCCTGGTTTCACAATGGCCA 127
||||||||||||| | || || | |||||| | |||| ||||| || |
as00055 1651 GACCCTGCTGCCCACGCACCCACACTCTATACTTGGTACCACAACGGTCG 1700
D P A A H A P T L Y T W Y H N G R
1701 ----+----*----+----*----+----*----+----*----+----* 1750
W L Q E G P A S S L Q F L V T T R
msj09017 128 TTGGCTTCAGGAGGGACCGGCTTCCTCACTCCAGTTCCTGGTGACTACAC 177
|||||| |||||||| || ||| |||||||| ||||||||| | || |
as00055 1701 TTGGCTGCAGGAGGGTCCAGCTGCCTCACTCTCATTCCTGGTGGCCACGC 1750
W L Q E G P A A S L S F L V A T R
1751 ----+----*----+----*----+----*----+----*----+----* 1800
A H A G A Y F C Q V H D T Q G T
msj09017 178 GGGCTCACGCTGGTGCTTACTTTTGCCAGGTGCATGATACACAAGGCACA 227
||||||| || || || |||| |||||||| || ||| | || |||||
as00055 1751 GGGCTCATGCAGGCGCCTACTCTTGCCAGGCCCAGGATGCCCAGGGCACC 1800
A H A G A Y S C Q A Q D A Q G T
1801 ----+----*----+----*----+----*----+----*----+----* 1850
R S S R P A S L Q I L Y A P R D A
msj09017 228 CGGAGCTCCAGACCTGCCAGCCTGCAAATTCTCTATGCCCCCCGGGATGC 277
|| |||||| | ||||| ||||||| | ||||||||||| | ||| ||
as00055 1801 CGCAGCTCCCGTCCTGCTGCCCTGCAAGTCCTCTATGCCCCTCAGGACGC 1850
R S S R P A A L Q V L Y A P Q D A
1851 ----+----*----+----*----+----*----+----*----+----* 1900
V L S S F R D S R T R L M V V I Q
msj09017 278 TGTCCTGTCTTCCTTTCGAGACTCAAGGACCAGGCTCATGGTCGTGATTC 327
||||||||| ||||| || ||||| ||| |||| ||||| ||||| |
as00055 1851 TGTCCTGTCCTCCTTCCGGGACTCCAGGGCCAGATCCATGGCTGTGATAC 1900
V L S S F R D S R A R S M A V I Q
1901 ----+----*----+----*----+----*----+----*----+----* 1950
C T V D S E P P A E M V L S H N
msj09017 328 AGTGCACCGTGGACAGTGAGCCACCTGCTGAGATGGTCCTATCCCACAAT 377
||||||| |||||||||||||||||||||||| ||| |||||| || ||
as00055 1901 AGTGCACTGTGGACAGTGAGCCACCTGCTGAGCTGGCCCTATCTCATGAT 1950
C T V D S E P P A E L A L S H D
1951 ----+----*----+----*----+----*----+----*----+----* 2000
G K V L A A S H E R H S S A S G I
msj09017 378 GGCAAGGTGCTAGCTGCCAGCCACGAGCGTCACAGCTCAGCATCAGGGAT 427
||||||||||| || | ||| || | ||||||| ||||||||||
as00055 1951 GGCAAGGTGCTGGCCACGAGCAGCGGGGTCCACAGCTTGGCATCAGGGAC 2000
G K V L A T S S G V H S L A S G T
2001 ----+----*----+----*----+----*----+----*----+----* 2050
G H I Q V A R N A L R L Q V Q D V
msj09017 428 AGGCCACATCCAGGTAGCCCGAAATGCTCTTCGACTACAAGTGCAAGATG 477
|||||| ||||||| |||||||| || || || || || ||||||||||
as00055 2001 AGGCCATGTCCAGGTGGCCCGAAACGCCCTACGGCTGCAGGTGCAAGATG 2050
G H V Q V A R N A L R L Q V Q D V
2051 ----+----*----+----*----+----*----+----*----+----* 2100
T L G D D T Y V C T A Q N T L
msj09017 478 TGACTCTGGGTGATGGCAACACCTATGTTTGCACAGCCCAGAATACACTG 527
|| || ||||||| |||||||||||||||||||||| || |||
as00055 2051 TGCCTGCAGGTGATG...ACACCTATGTTTGCACAGCCCAAAACTTGCTG 2097
P A G D D T Y V C T A Q N L L
2101 ----+----*----+----*----+----*----+----*----+----* 2150
G S I S T T Q R L L T D D I R V
msj09017 528 GGCTCCATCAGTACCACCCAGAGGCTTCTGACGGAGACTGATATACGTGT 577
||||| ||||| |||| | | || | | | || | | ||| ||
as00055 2098 GGCTCAATCAGCACCATCGGGCGGTTGCAGGTAGA...AGGTGCACGCGT 2144
G S I S T I G R L Q V E G A R V
2151 ----+----*----+----*----+----*----+----*----+----* 2200
T A E P G L D V P E G T A L N L S
msj09017 578 GACAGCTGAGCCAGGCTTGGATGTGCCAGAGGGCACAGCTCTGAACTTAA 627
| || ||||| ||| |||| ||||| |||||| | || |||||| | |
as00055 2145 GGTGGCAGAGCCTGGCCTGGACGTGCCTGAGGGCGCTGCCCTGAACCTCA 2194
V A E P G L D V P E G A A L N L S
2201 ----+----*----+----*----+----*----+----*----+----* 2250
C L L P G G S G P T G N S S F T
msj09017 628 GCTGCCTCCTCCCTGGTGGCTCTGGGCCCACGGGCAACTCTTCCTTCACG 677
|||||| ||||| |||||| ||||||| ||||||||| |||| |
as00055 2195 GCTGCCGCCTCCTGGGTGGCCCTGGGCCTGTGGGCAACTCCACCTTTGCA 2244
C R L L G G P G P V G N S T F A
2251 ----+----*----+----*----+----*----+----*----+----* 2300
W F W N R H R L H S A P V P T L S
msj09017 678 TGGTTCTGGAATCGCCACCGACTACATTCAGCTCCTGTGCCCACACTCTC 727
|||||||||||| || || || || | | ||||||||||| ||| |
as00055 2245 TGGTTCTGGAATGACCGGCGGCTGCACGCGGAGCCTGTGCCCACTCTCGC 2294
W F W N D R R L H A E P V P T L A
2301 ----+----*----+----*----+----*----+----*----+----* 2350
F T P V V R A Q A G L Y H C R A D
msj09017 728 CTTCACCCCTGTGGTCCGGGCTCAGGCTGGGCTGTACCACTGCAGGGCTG 777
|||||||| |||| || ||||| |||||| ||||||||||| |||||
as00055 2295 CTTCACCCACGTGGCTCGTGCTCAAGCTGGGATGTACCACTGCCTGGCTG 2344
F T H V A R A Q A G M Y H C L A E
2351 ----+----*----+----*----+----*----+----*----+----* 2400
L P T G A T T S A P V M L R V L
msj09017 778 ATCTCCCCACCGGGGCCACTACCTCTGCTCCAGTTATGCTCCGTGTCCTC 827
| |||||||| ||||| || ||||||||||||| ||||||||||| |||
as00055 2345 AGCTCCCCACTGGGGCTGCTGCCTCTGCTCCAGTCATGCTCCGTGTGCTC 2394
L P T G A A A S A P V M L R V L
2401 ----+----*----+----*----+----*----+----*----+----* 2450
Y P P K T P T L I V F V E P Q G G
msj09017 828 TATCCCCCCAAGACGCCCACTCTCATAGTGTTTGTGGAGCCTCAGGGTGG 877
|| || |||||||||||||| | || || || ||||||||| |||||||
as00055 2395 TACCCTCCCAAGACGCCCACCATGATGGTCTTCGTGGAGCCTGAGGGTGG 2444
Y P P K T P T M M V F V E P E G G
2451 ----+----*----+----*----+----*----+----*----+----* 2500
H Q G I L D C R V D S E P L A I L
msj09017 878 CCACCAGGGCATCCTCGACTGTCGAGTGGACAGTGAGCCCCTGGCCATCC 927
|| || ||||||||| || || ||||||||||| ||||| || |||| ||
as00055 2445 CCTCCGGGGCATCCTGGATTGCCGAGTGGACAGCGAGCCGCTCGCCAGCC 2494
L R G I L D C R V D S E P L A S L
2501 ----+----*----+----*----+----*----+----*----+----* 2550
T L H R G S Q L V A S N Q L H D
msj09017 928 TCACTCTTCACCGGGGCAGTCAACTAGTAGCCTCCAACCAACTTCACGAT 977
| ||||| |||| ||||||| ||| || ||||||| || | || | |
as00055 2495 TGACTCTCCACCTTGGCAGTCGACTGGTGGCCTCCAGTCAGCCCCAGGGT 2544
T L H L G S R L V A S S Q P Q G
2551 ----+----*----+----*----+----*----+----*----+----* 2600
A P T K P H I R V T A P P N A L R
msj09017 978 GCTCCCACCAAGCCCCACATCCGAGTCACTGCTCCTCCCAATGCCTTGAG 1027
||||| | |||| ||||||| ||| ||| | ||||||||| ||||
as00055 2545 GCTCCTGCAGAGCCACACATCCATGTCCTGGCTTCCCCCAATGCCCTGAG 2594
A P A E P H I H V L A S P N A L R
2601 ----+----*----+----*----+----*----+----*----+----* 2650
V D I E E L G P S N Q G E Y V C T
msj09017 1028 AGTGGACATAGAGGAGCTCGGCCCTAGCAATCAAGGGGAGTATGTGTGCA 1077
|||||||| |||| ||| | || ||| | |||||||| || | ||
as00055 2595 GGTGGACATCGAGGCGCTGAGGCCCAGCGACCAAGGGGAATACATCTGTT 2644
V D I E A L R P S D Q G E Y I C S
2651 ----+----*----+----*----+----*----+----*----+----* 2700
A S N T L G S A S A S A Y F G T
msj09017 1078 CTGCCTCCAACACTCTGGGCTCTGCCTCAGCCTCTGCCTACTTTGGGACC 1127
||||||| || |||||||||||||| |||| ||||||||||| |
as00055 2645 CTGCCTCAAATGTCCTGGGCTCTGCCTCTACCTCCACCTACTTTGGGGTC 2694
A S N V L G S A S T S T Y F G V
2701 ----+----*----+----*----+----*----+----*----+----* 2750
R A L H Q L Q L F Q R L L W V L G
msj09017 1128 AGAGCTCTGCACCAACTGCAGCTGTTCCAGAGGCTGCTCTGGGTCCTGGG 1177
||||| ||||||| ||||| | ||||||| ||||||||||||||||||
as00055 2695 AGAGCCCTGCACCGCCTGCATCAGTTCCAGCAGCTGCTCTGGGTCCTGGG 2744
R A L H R L H Q F Q Q L L W V L G
2751 ----+----*----+----*----+----*----+----*----+----* 2800
F L A G F L C L L L G L V A Y H T
msj09017 1178 ATTTCTGGCAGGCTTCCTGTGCCTGCTGCTGGGTCTGGTGGCCTATCACA 1227
| | |||| ||| ||||| ||||||| |||| |||| ||||| |||
as00055 2745 ACTGCTGGTGGGCCTCCTGCTCCTGCTGTTGGGCCTGGGGGCCTGCTACA 2794
L L V G L L L L L L G L G A C Y T
2801 ----+----*----+----*----+----*----+----*----+----* 2850
W R K K S S T K L N E D E N S A
msj09017 1228 CCTGGAGAAAGAAGAGTTCTACCAAGCTGAATGAGGATGAGAATTCAGCA 1277
||||||||| || | || | |||| || || |||||||| |
as00055 2795 CCTGGAGAAGGAGGCGTGTTTGTAAGCAGAGCATGGGCGAGAATTCGGTG 2844
W R R R R V C K Q S M G E N S V
2851 ----+----*----+----*----+----*----+----*----+----* 2900
E M A T K K N T I Q E E V V A -
msj09017 1278 GAGATGGCCACTAAGAAAAATACTATCCAGGAGGAAGTGGTTGCTGC... 1324
|||||||| | ||||| | || | ||| | || |||
as00055 2845 GAGATGGCTTTTCAGAAAGAGACCACGCAGCTCATTGATCCTGATGCAGC 2894
E M A F Q K E T T Q L I D P D A A
2901 ----+----*----+----*----+----*----+----*----+----* 2950
msj09017 1325 .................................................. 1325
as00055 2895 CACATGTGAGACCTCAACCTGTGCCCCACCCCTGGGCTGACCAGTGGTGT 2944
T C E T S T C A P P L G *
2951 ----+----*----+----*----+----*----+----*----+----* 3000
msj09017 1325 ................................TCTCTGACAACTCAGGTG 1342
||| ||| |||| |
as00055 2945 TGCCTGCCCTCCGGAGGAGAAAGTGGCCAGAATCTGTGATGACTCCAG.C 2993
3001 ----+----*----+----*----+----*----+----*----+----* 3050
msj09017 1343 CTGTGAACAAGA................TCCTGCCTACCTCTGTATAAGC 1376
|| |||| || ||||||| ||||| || |
as00055 2994 CTATGAATGTGAATGAGGCAGTGTTGAGTCCTGCCCGCCTCTACGAAAAC 3043
3051 ----+----*----+----*----+----*----+----*----+----* 3100
msj09017 1377 AGTACAGAGACATCTGGC.TTTCCTGACCTGCCCGACTTGCCTTCCAAGC 1425
|| | | |||||||| | ||| ||||||| || ||||||
as00055 3044 AGCTCTGTGACATCTGACTTTTTATGACCTGGCC..........CCAAGC 3083
3101 ----+----*----+----*----+----*----+----*----+----* 3150
msj09017 1426 CTCTTGATCCTAAGAAAAATGGACGAAGGGAGGTTTGGGGTTGGAGGTCA 1475
|||||| || |||||||| | | ||||| || | |||
as00055 3084 CTCTTG.CCCCCCCAAAAATGGGTGGTGAGAGGTCTGCCCAGGAGGGT.. 3130
3151 ----+----*----+----*----+----*----+----*----+----* 3200
msj09017 1476 ACCTGCCGCCTCCAGGGCTCTGAGACGGACTCAGC.CATGTTGCCCACGT 1524
| ||| ||| | |||| | ||| ||| || | || | |
as00055 3131 ..GTTGACCCTGGAGGACACTGAAGAGCACTGAGCTGATCTCGCTCTCTC 3178
3201 ----+----*----+----*----+----*----+----*----+----* 3250
msj09017 1525 CTCTCTGTGTGGTTTTCCTCTGTATCCCTTT................... 1555
|||||| | | ||| | | ||| |||
as00055 3179 TTCTCTG.GATCTCCTCCCTTCTCTCCATTTCTCCCTCAAAGGAAGCCCT 3227
3251 ----+----*----+----*----+----*----+----*----+----* 3300
msj09017 1556 ..........GCCTTTCTCTTCAAAGCTCACCTTGGACTTTCTTGGTGGG 1595
| ||||| || || ||||| ||||||| | | |||
as00055 3228 GCCCTTTCACATCCTTCTCCTCGAAAGTCACCCTGGACTT..TGGTTGGA 3275
3301 ----+----*----+----*----+----*----+----*----+----* 3350
msj09017 1596 TTAGAGCAACATCCAGTTTCTCACAGACTTTCTAAGACGGTCTGTACCAG 1645
|| |||| | | || | |||| || || | ||| | ||||||
as00055 3276 TTGCAGCATCCTGCA..TCCTCAGAGGCTCACCAAGGCATTCTGTATTCA 3323
3351 ----+----*----+----*----+----*----+----*----+----* 3400
msj09017 1646 CCAGGATATCAGTCAGGTTGCTCTAAC.AGAGACTCAATACAGTGACCAC 1694
||| |||||||||| ||||||||| |||||| ||||||||||| |
as00055 3324 ACAGAGTATCAGTCAGCCTGCTCTAACAAGAGACCAAATACAGTGACTTC 3373
3401 ----+----*----+----*----+----*----+----*----+----* 3450
msj09017 1695 AGCATGACAGGGTCTTAGTTTTCCCTCCTGGCCT................ 1728
| ||||| || | ||| ||||| |||| ||
as00055 3374 AACATGATAGAATTTTATTTTTCTCTCCCACGCTAGTCTGGCTGTTACGA 3423
3451 ----+----*----+----*----+----*----+----*----+----* 3500
msj09017 1729 ..GGTTATGTTGTTGTGGTATCAGAATCCTTCTTGCTTGATTTTCTCCAT 1776
| ||||| ||||| || |||| |||||||| ||| ||||||| ||
as00055 3424 TGGTTTATGATGTTG.GGGCTCAGGATCCTTCTATCTTCCTTTTCTCTAT 3472
3501 ----+----*----+----*----+----*----+----*----+----* 3550
msj09017 1777 TCCCCAAGTGTTGCCTTTGATTATGAAGCT...CAGGTAACTGCAGTGCC 1823
|| || || ||||||||||| ||| ||| || | | || || |
as00055 3473 CCCTAAAATGATGCCTTTGATTGTGAGGCTCACCATGGCCCCGCTTTGTC 3522
3551 ----+----*----+----*----+----*----+----*----+----* 3600
msj09017 1824 CATGGACCCTACAG...GGAGAAGGAAGAGTGAAGGGA.AGACATACCCA 1869
|| |||| ||| | ||||||||||||| ||| | | || |||||
as00055 3523 CACATGCCCTCCAGCCAGAAGAAGGAAGAGTGGAGGTAGAAGCACACCCA 3572
3601 ----+----*----+----*----+----*----+----*----+----* 3650
msj09017 1870 TCCCCATGGTCCATGGACTGTGTGTGCAATTGCACCCCAC.......CCA 1912
| |||||||| | | | | | | ||||| || |
as00055 3573 TGCCCATGGTGGACGCA...ACTCAGAAGCTGCACAGGACTTTTCCACTC 3619
3651 ----+----*----+----*----+----*----+----*----+----* 3700
msj09017 1913 ACTTCTCATCCGCTAGAAACTGGTCACATAAACATACCATGCTGAAAGGG 1962
||||| ||| ||| || | ||||||| | || ||| |||||
as00055 3620 ACTTCCCATTGGCTGGAGTATTGTCACATGGCTACTGCAAGCTACAAGGG 3669
3701 ----+----*----+----*----+----*----+----*----+----* 3750
msj09017 1963 .................................................. 1963
as00055 3670 AGACTGGGAAATGTAGTTTTTATTTTGAGTCCAGAGGACATTTGGAATTG 3719
3751 ----+----*----+----*----+----*----+----*----+----* 3800
msj09017 1963 .................................................. 1963
as00055 3720 GACTTCCAAAGGACTCCCAACTGTGAGCTCATCCCTGAGACTTTTGACAT 3769
3801 ----+----*----+----*----+----*----+----*----+----* 3850
msj09017 1963 .................................................. 1963
as00055 3770 TGTTGGGAATGCCACCAGCAGGCCATGTTTTGTCTCAGTGCCCATCTACT 3819
3851 ----+----*----+----*----+----*----+----*----+----* 3900
msj09017 1963 .................................................. 1963
as00055 3820 GAGGGCCAGGGTGTGCCCCTGGCCATTCTGGTTGTGGGCTTCCTGGAAGA 3869
3901 ----+----*----+----*----+----*----+----*----+----* 3950
msj09017 1963 .................................................. 1963
as00055 3870 GGTGATCACTCTCACACTAAGACTGAGGAAATAAAAAAGGTTTGGTGTTT 3919
3951 ----+----*----+----*----+----*----+----*----+----* 4000
msj09017 1963 .................................................. 1963
as00055 3920 TCCTAGGGAGAGAGCATGCCAGGCAGTGGAGTTGCCTAAGCAGACATCCT 3969
4001 ----+----*----+----*----+----*----+----*----+----* 4050
msj09017 1963 .................................................. 1963
as00055 3970 TGTGCCAGATTTGGCCCCTGAAAGAAGAGATGCCCTCATTCCCACCACCA 4019
4051 ----+----*----+----*----+----*----+----*----+----* 4100
msj09017 1963 .................................................. 1963
as00055 4020 CCCCCCCTACCCCCAGGGACTGGGTACTACCTTACTGGCCCTTACAAGAG 4069
4101 ----+----*----+----*----+----*----+----*----+----* 4150
msj09017 1963 .................................................. 1963
as00055 4070 TGGAGGGCAGACACAGATGTTGTCAGCATCCTTATTCCTGCTCCAGATGC 4119
4151 ----+----*----+----*----+----*----+----*----+----* 4200
msj09017 1963 .................................................. 1963
as00055 4120 ATCTCTGTTCATGACTGTGTGAGCTCCTGTCCTTTTCCTGGAGACCCTGT 4169
4201 ----+----*----+----*----+----*----+----*----+----* 4250
msj09017 1963 .................................................. 1963
as00055 4170 GTCGGGCTGTTAAAGAGAATGAGTTACCAAGAAGGAATGACGTGCCCCTG 4219
4251 ----+----*----+----*----+----*----+----*----+----* 4300
msj09017 1963 .................................................. 1963
as00055 4220 CGAATCAGGGACCAACAGGAGAGAGCTCTTGAGTGGGCTAGTGACTCCCC 4269
4301 ----+----*----+----*----+----*----+----*----+----* 4350
msj09017 1963 .................................................. 1963
as00055 4270 CTGCAGCCTGGTGGAGATGGTGTGAGGAGCGAAGAGCCCTCTGCTCTAGG 4319
4351 ----+----*----+----*----+----*----+----*----+----* 4400
msj09017 1963 .................................................. 1963
as00055 4320 ATTTGGGTTGAAAAACAGAGAGAGAAGTGGGGAGTTGCCACAGGAGCTAA 4369
4401 ----+----*----+----*----+----*----+----*----+----* 4450
msj09017 1963 .................................................. 1963
as00055 4370 CACGCTGGGAGGCAGTTGGGGGCGGGTGAACTTTGTGTAGCCGAGGCCGC 4419
4451 ----+----*----+----*----+----*----+----*----+----* 4500
msj09017 1963 .................................................. 1963
as00055 4420 ACCCTCCCTCATTCCAGGCTCATTCATTTTCATGCTCCATTGCCAGACTC 4469
4501 ----+----*----+----*----+----*----+----*----+----* 4550
msj09017 1963 .................................................. 1963
as00055 4470 TTGCTGGGAGCCCGTCCAGAATGTCCTCCCAATAAAACTCCATCCTATGA 4519
4551 -- 4552
msj09017 1963 .. 1963
as00055 4520 CG 4521