Comparison of KIAA cDNA sequences between mouse and human (FLJ00416)
<<Original sequence data>>
mouse mFLJ00416 (msj08249) length: 2525 bp, CDS: 2 - 1570
human (sj04686) length: 4684 bp, CDS: 4020 - 4685
In this page, the longest coding region predicted by GeneMark
was assigned as CDS for each of mouse and human KIAA cDNAs.
They were colored in green. When the CDS positions were not identical
on the aligned sequences between mouse and human cDNAs, mouse cDNA
sequence was translated based on the human CDS information.
The amino acid sequence produced here may not be identical to the
protein sequence deduced (see Description).
<<Aligned sequence information>>
----------------------------------------------------------
region #match #mismatch %diff
----------------------------------------------------------
DNA
5'UTR: 95 - 4055 1107 1255 53.1
CDS: 4056 - 1 0 0 0.0
3'UTR: 2 - 4473 1209 1327 52.3
amino acid
CDS: 4056 - 1 0 0 0.0
----------------------------------------------------------
<<Alignment>>
1 ----+----*----+----*----+----*----+----*----+----* 50
msj08249 1 .................................................. 1
sj04686 1 GTTTGACATTCATCCAGATACACAATTTTAGCTATGCTGGTGGGTAAAAC 50
51 ----+----*----+----*----+----*----+----*----+----* 100
msj08249 1 ............................................CCGCTA 6
| | |
sj04686 51 AGTGAGATGATCTTGTATCAGCTGATAAACAGGCACTTCCCTGAGCTCCA 100
101 ----+----*----+----*----+----*----+----*----+----* 150
msj08249 7 CCCAAAATGTCGGCGCC.........................CAGAGGGA 31
|| | || | ||| || |
sj04686 101 CCAGACATCCCTATGCCTCCCTAACTCTCCTTCTGGATCTAGAAGTTCAA 150
151 ----+----*----+----*----+----*----+----*----+----* 200
msj08249 32 GGTAGAAAGCCCCAAGCCACCTCCGGACCTTCCGTCATGGAAGACTCCTC 81
| | | | ||| | ||||| |||| || || || | |||
sj04686 151 GATCAACATGAGCAACACCCCTCCCCACCTCCCCACAAAAAAAAAACCTT 200
201 ----+----*----+----*----+----*----+----*----+----* 250
msj08249 82 GCTG.............................................. 85
| |
sj04686 201 CCAGAGAGGATAGAGTCCAACTGAGAGTGCAGACCATATTGTGATCCTTG 250
251 ----+----*----+----*----+----*----+----*----+----* 300
msj08249 86 .................................................. 86
sj04686 251 AAACGGAGAGCCCATCAAACTCCAGAGCCATAGAGGCCTCACGAATGCTC 300
301 ----+----*----+----*----+----*----+----*----+----* 350
msj08249 86 .................................................. 86
sj04686 301 TCATCCCTCCCTGCTTACTGGCAGAAGTGGGGAAGGGGTTCCGGAGTGGA 350
351 ----+----*----+----*----+----*----+----*----+----* 400
msj08249 86 .................................................. 86
sj04686 351 AAAAAGGGACTGGTCCCAGGTGATATTTGACCCTGATTCCTGGATGAGGA 400
401 ----+----*----+----*----+----*----+----*----+----* 450
msj08249 86 .................................................. 86
sj04686 401 AACATATCTGCGATGTTAAGAGCCTGGGCCCTGGAGTCAAGACATCATTC 450
451 ----+----*----+----*----+----*----+----*----+----* 500
msj08249 86 ..........................CCTGTGGTTCCTGCCCCCATCGCT 109
| || | || | | || ||
sj04686 451 GTTCAAATCTTTACTCTCTGCGTGGCCTTGGGCAAGGTGTTCGCTTCTCT 500
501 ----+----*----+----*----+----*----+----*----+----* 550
msj08249 110 GCTCCAGGACCAGCAC.................................. 125
|| | || ||
sj04686 501 AAGCCTTAATCAAGACTTTTGCAAAATGGGACACATAGTTCTACGTACTT 550
551 ----+----*----+----*----+----*----+----*----+----* 600
msj08249 126 .................................................. 126
sj04686 551 GCCCAGACATGCCATGAGCATAATACCCACAAAGTGTTCATACACAGAAG 600
601 ----+----*----+----*----+----*----+----*----+----* 650
msj08249 126 .................................................. 126
sj04686 601 CTTTCAGGACACATTAGCCATTGTTATCAGGAGCAGCTAAGCCTCACATC 650
651 ----+----*----+----*----+----*----+----*----+----* 700
msj08249 126 .................................................. 126
sj04686 651 AACCCTCTGAATAGGGCATATCTGTCCCATTTTGCAGATGGGGAAACTGA 700
701 ----+----*----+----*----+----*----+----*----+----* 750
msj08249 126 ..................CATCTGCCACTGCGCCTCGGGTCCCCTTTCAC 157
|| |||| | |||| | | |
sj04686 701 GGCACAGGAAAGCCAAGTCAGTTGCCTAAGTTCCTCTGCCAGTAAATGGC 750
751 ----+----*----+----*----+----*----+----*----+----* 800
msj08249 158 TGTAGCGAATGTGGCAAGAGTTTCCGTTACC................... 188
| | || ||| || || | || |||
sj04686 751 AGGGCCAAAACTGGAAACAGGTCTTGTGACCCGAATGTCCCAGAGAATGG 800
801 ----+----*----+----*----+----*----+----*----+----* 850
msj08249 189 ........................................GATCAGACCT 198
| |||| |||
sj04686 801 AGAACAAATAAACCCAAGGAGGAAAGGGGACATTACGAGGGCTCAGTCCT 850
851 ----+----*----+----*----+----*----+----*----+----* 900
msj08249 199 GAGGCGCCACTTTGCTCGACACACGGCTCTCA.................. 230
| | | | |||| | | || ||
sj04686 851 GGGTTTGAATTCAGCTCTGCCTATAACTAGCAATTGACTTTGCCAGTTTC 900
901 ----+----*----+----*----+----*----+----*----+----* 950
msj08249 231 .................................................. 231
sj04686 901 CTCCTCTGAAAAGTGAATAAACCAGGGTTGTCAGGAGAATCGAATAAGAC 950
951 ----+----*----+----*----+----*----+----*----+----* 1000
msj08249 231 .................................................. 231
sj04686 951 AGTGGGCTTTAAAATGCCCCTCGAACACTGCCTGGTGCACAGTAAGCACT 1000
1001 ----+----*----+----*----+----*----+----*----+----* 1050
msj08249 231 .................................................. 231
sj04686 1001 CAATAAACTTCACCAACGCCACCACCATCTTCCCGGCGCCCACTCAGATA 1050
1051 ----+----*----+----*----+----*----+----*----+----* 1100
msj08249 231 .................................................. 231
sj04686 1051 CTGGGAGCATGGGATTGGGGTGTAACGGAGGGGAAGGGGAGGCACAGGTG 1100
1101 ----+----*----+----*----+----*----+----*----+----* 1150
msj08249 231 .AGCCCCACGCATGTCCTCGATGCGGTAAGGGCTTCAAGCATAGCTTCAA 279
||| | ||| || || || | || || || | | ||
sj04686 1101 CAGCTGGAAGCAGGTGCTGGAGGTGG..CCCCCTGCACCCCCCCCCTCCC 1148
1151 ----+----*----+----*----+----*----+----*----+----* 1200
msj08249 280 CTTGGCTAACCACCTGCGCT....CACACACTGGTGAACGACCCTACCGA 325
||| | |||| | || || | || | | ||| | |
sj04686 1149 CTTTAACAGCCACATAGACTGCTGTCCAGAGAGGAGCAACCACCTTTCCA 1198
1201 ----+----*----+----*----+----*----+----*----+----* 1250
msj08249 326 TGCTCTGCCTGCCCTAAGGGATTCCGAGACT................... 356
| | | | ||| ||| || || ||
sj04686 1199 TACGGTTCGCTCCCACGGGGTAGCCTAGTCTAGGAGTCTGGTCTTTGGAA 1248
1251 ----+----*----+----*----+----*----+----*----+----* 1300
msj08249 357 ..............................................CCAC 360
|| |
sj04686 1249 CGGTGGAAAGGGGGAGACTGGTCCCCCGACCCTCCCCGTCCCCTCGCCCC 1298
1301 ----+----*----+----*----+----*----+----*----+----* 1350
msj08249 361 TGGCCTGCTGCACCACCAGGTGGTCCACACTGGTGAAAAGCCCTACTGCT 410
| ||| || || | | || | | || |||||| | ||
sj04686 1299 GGTACTGACGCGCC....CATCGGCCCCCGAGCTGCGAAGCCCAAGCGCG 1344
1351 ----+----*----+----*----+----*----+----*----+----* 1400
msj08249 411 GTTTGGTCTGTGAG.................................... 424
| || | || |
sj04686 1345 GGGCGGGCCCTGCGGGGGCGACGGCCAATGAGCGGCGCCGGGTAAGCGGG 1394
1401 ----+----*----+----*----+----*----+----*----+----* 1450
msj08249 425 .........................CTCCGCTTCTCCTCTCG..CTCCAG 447
|| ||| | | || | |
sj04686 1395 CGGCGGGGGCTGCCAGGAAGGGGGTCTGCGCGCGCGCGCCCGGACGGCTT 1444
1451 ----+----*----+----*----+----*----+----*----+----* 1500
msj08249 448 CCTGGGCCGCCATCTCAAGCGGCGGCACCGGGGCACACTTCCCTCTCCCC 497
| ||| ||| | | | | | || || || | | | ||||
sj04686 1445 CTCGGGGCGCGAGCGCGGGAGCAGGAACAGGTGTTGGAGGCGCGCTCCGG 1494
1501 ----+----*----+----*----+----*----+----*----+----* 1550
msj08249 498 TGCAGCCTAGCCCCGGCCTGCCTCCCCTGAGCTCCCCCT....GCTCAGT 543
|| |||| | | ||| ||| | |||||| || |
sj04686 1495 GAGCGCGCGGCCCGGCCTCCCCTACCCCCACAACCCCCTCCCGCCTGCGC 1544
1551 ----+----*----+----*----+----*----+----*----+----* 1600
msj08249 544 ATGTTGCAACGTGGGTCCCTGTTCGGTTTGTGGAGGTGG........... 582
|| | |||| ||| | | ||| | | ||
sj04686 1545 CCCCCGCCTCTCGGGTACCTCATTTGCATGTCGCCGGGGCTCGCGAGTGT 1594
1601 ----+----*----+----*----+----*----+----*----+----* 1650
msj08249 583 ...................AGGGTCCAGTGGAGGAGAGGGCCTGGAGGGA 613
||| | | || |||| || | ||
sj04686 1595 GCGCGCGCGCGGGGGCAACGGGGCCGGCGCGTGGGAAGGGGAGGGGGTGA 1644
1651 ----+----*----+----*----+----*----+----*----+----* 1700
msj08249 614 GCAGGAGCAACCAGCTGGGGACTGGCAGAGGCTGCAGCAGCCGCGGCAGC 663
| || | || || | | | ||||| | || || ||| |
sj04686 1645 GGGGGCCCTGCCCCTCGGCGGC..GGCGAGGCGGGGGCGGCGGCGCGCGG 1692
1701 ----+----*----+----*----+----*----+----*----+----* 1750
msj08249 664 CTCGCTGCCCCCATTTGCATGCGGTGCCTGTGCCAGGCGTTTTGACCATG 713
| ||| | | | | ||| | || | || || |
sj04686 1693 TGCCGGCCCCGCCCCTCGGAGAAGCGCCGGGCCCCTCCCTTCCTGCCCTT 1742
1751 ----+----*----+----*----+----*----+----*----+----* 1800
msj08249 714 GCCGGGAGCTTGCAGCCCACTGGGCCGCACACACCGATGTGAAGCCATTC 763
||| || ||| || ||| || | | | |
sj04686 1743 CCCGCCCGCCTGCGCGCCCGCGGGAAACAAAGGGGACTCGCTGGGTCCTA 1792
1801 ----+----*----+----*----+----*----+----*----+----* 1850
msj08249 764 AAGTGCCCTCGCTG.......TGAGCGCGACTTCAACGCACCTGCGCTGC 806
| | | |||| | | || | | |||||| ||| |
sj04686 1793 ACGACCGGTCGCGGCCACGCCCGGAAGCCGCGCCTGCGCACCGGCGGCCC 1842
1851 ----+----*----+----*----+----*----+----*----+----* 1900
msj08249 807 TGG........................AACGCCACAAGCTCACTCATGAC 832
||| | | ||||| | || || |
sj04686 1843 TGGTGTGTCCCCAGTGGGAAATAACCCAGCACCACATCCCCAACCACCTC 1892
1901 ----+----*----+----*----+----*----+----*----+----* 1950
msj08249 833 CTGCAGGGGAGCAATGCACCTCCAACGCAGGTTTGGGCCTCGGGTGGGGG 882
| | ||| || ||| | | | | |
sj04686 1893 GAAACGCCTTTCCTCTCACAAAGCACACAGTCGGGTGACCCAAAGACAGA 1942
1951 ----+----*----+----*----+----*----+----*----+----* 2000
msj08249 883 TCCGGAGGTGGCAGGAGAGGGAGA............TGCCTCAGAGGTGG 920
| | || ||||| |||| | |||| |
sj04686 1943 TACCGAATGATGAGGAGCGGGAAAATGGCTGCCCAGTGCCCGTAATTAAC 1992
2001 ----+----*----+----*----+----*----+----*----+----* 2050
msj08249 921 GGGCCGCCCCCCAGACTTGGGACGCC..GGGCTGCTCCTGAGCCCTACCG 968
| | || ||| ||| | | || || |||| | |
sj04686 1993 ATGGCACCGGACAGGCTTCGAAGCCCATGGAGTGCTAAGTGGATAAGATG 2042
2051 ----+----*----+----*----+----*----+----*----+----* 2100
msj08249 969 GGGCAGGCGTGCCCAAGCTGGAGGCATTGCTCCCGGGGGAC.GAGGGCTC 1017
| || || | | |||| | ||||| || | || | ||
sj04686 2043 GTGCCGGTCTTTTCCAGCT..CTGTATTGCAGTTGGCGCACTTCGCTTTC 2090
2101 ----+----*----+----*----+----*----+----*----+----* 2150
msj08249 1018 TGGGAATGACCAGGCTCCGGCTGCAGCAGCCGAAGCATCTTCGGAAGACA 1067
| | || ||| ||| | || || || | | ||
sj04686 2091 TTTTTTTTTCCCTAGTCCAACTGTA.CATCCTAATCGGAGGAGTCCGAGG 2139
2151 ----+----*----+----*----+----*----+----*----+----* 2200
msj08249 1068 CACTGTACCAGTGCGACTGCGGGACCTTCTTCGCATCTGCCCCGGCTTTG 1117
| || | || | | | || || | | || || ||
sj04686 2140 CTGTGAAAAAGAAATAGTATCTGCTCTCATTTACGTTAGCATCGCCTAGT 2189
2201 ----+----*----+----*----+----*----+----*----+----* 2250
msj08249 1118 GCCAGCCATTTAGAGGCTCACTCAGGCCCAGCCACTT............. 1154
| | |||| ||| || ||| | |||| |||
sj04686 2190 GTC.GCCACGGAGAAGCCGCCTCGCTCTCAGCTCCTTGCCCTTAGTCTGT 2238
2251 ----+----*----+----*----+----*----+----*----+----* 2300
msj08249 1155 ........ATGGCTGTGGCCACTGCGGGGCGCTGTACGCAGCGCT..... 1191
||| ||| | | | | | || ||| || ||
sj04686 2239 ATGGCGCCGTGGGTGTCCCTAAGCCCCGCCCCTTCCCGCTGCCCTCACCC 2288
2301 ----+----*----+----*----+----*----+----*----+----* 2350
msj08249 1192 .............................GGCTGCCCTGGAGGAGCATCG 1212
| | |||| || | |
sj04686 2289 AAGATGGCGCGGGCCTGGCTTCTTCAACCTCCAGGGCTGGGAAAGGAAAG 2338
2351 ----+----*----+----*----+----*----+----*----+----* 2400
msj08249 1213 GCGTGCAAGCCATGGTGAGGGTAGCGGGGAGGCAGCCCCCGATGGTGAGG 1262
| | | | | ||| | || ||| || || || | |
sj04686 2339 GGAAAGAGGGAGAAGGGCGGGGATGAGGAAGGGGAGCCAAGAGGGCGGGA 2388
2401 ----+----*----+----*----+----*----+----*----+----* 2450
msj08249 1263 GCAATCAGGCGGCTGGCGGGCCGGGACCCGGCTCCTCCAGCCGTAGCAAG 1312
| || || | |||||| || | ||| | | || | ||
sj04686 2389 GAAAGGGGGAGTACGGCGGG..GGAAGGGAGCTGAGGCGGAAGT..CGAG 2434
2451 ----+----*----+----*----+----*----+----*----+----* 2500
msj08249 1313 AAGATCTTTGGCTGTTCCGAATGTGAGAAGCTGTTCCGTTCACCTCGAGA 1362
| | || || | | | | || | |||
sj04686 2435 GGGCCCCCCGGGTGGAAGTGACGCTGCCCCCGCTGCCCAAAATGTCGGCG 2484
2501 ----+----*----+----*----+----*----+----*----+----* 2550
msj08249 1363 CCTGGAAAGGCATGTGTTGGTCCATACCGGGGAAA............... 1397
|| | ||| | |||| || || | |||||
sj04686 2485 CC..CAGAGGGAGGTGTAAGTAATTAAAGAGGAAAGCCGACGGACTTCCC 2532
2551 ----+----*----+----*----+----*----+----*----+----* 2600
msj08249 1398 .....AGCCGTTCCCGTGCCTGGAGTGTGGCAAGTTCTTCCGCCACGAGT 1442
||| ||| || || | | | | | |||||
sj04686 2533 CGGCCTCCCGGGGCCGCCCCGGGTCTCCAGGACCAACGCTCCGTACGAGC 2582
2601 ----+----*----+----*----+----*----+----*----+----* 2650
msj08249 1443 G............CTACCTCAAGCGTCACCGGCTGCTGCATGGCACAGAG 1480
| || | | | | | | |||| || |
sj04686 2583 GAGGTGGACTCGCCTGGCCCCGGGGCCTGCCCGACCTGCCCCCCAACCGG 2632
2651 ----+----*----+----*----+----*----+----*----+----* 2700
msj08249 1481 CGGCCCTTCCCCTGCCACATCTGTGGCAAGGGCTTCATCACGCTTAGCAA 1530
|||| | | | | |||| ||| ||| ||
sj04686 2633 GCGCCCAGGGCTGCACCTTTTAGGGGCAGGGGGAGGGGCACAAAAGGCCG 2682
2701 ----+----*----+----*----+----*----+----*----+----* 2750
msj08249 1531 CCTCTCCAGGCATCTGAAGCTACACAGGGGCATGGACTGAATAACCAGGA 1580
||||| ||| | | | || ||| ||||| || ||
sj04686 2683 GCTCTCGGGGCCTGGG......GCCTGGAGCA..GACTGGGCAAGTGGGG 2724
2751 ----+----*----+----*----+----*----+----*----+----* 2800
msj08249 1581 CACCCCTGCCCACTGAGTCCAGAGCCAGACCGTAAGACAAGCCAGGCCCC 1630
||| || | | | | | | | | | ||| | |
sj04686 2725 GGGCCCGCTCCTCAGGCTGCGGGGTGGAGGAGGAGGCGGGGCCTAGTGGC 2774
2801 ----+----*----+----*----+----*----+----*----+----* 2850
msj08249 1631 TGC............................................... 1633
|||
sj04686 2775 TGCTGGGGCGGAGCAAGGGCTGGGAGGAGCCTGAGTTGGGCGGAGCTTAG 2824
2851 ----+----*----+----*----+----*----+----*----+----* 2900
msj08249 1634 .................................................. 1634
sj04686 2825 AGTGGAAGTGGGAGGGGCGTGGAGGAGGGAGAGTCTGGATAGAAAATGGG 2874
2901 ----+----*----+----*----+----*----+----*----+----* 2950
msj08249 1634 .........................CTGGAAAAATGGTGCCACCCAGAAC 1658
|| ||| || | | |||||
sj04686 2875 AGGGTCTTAGGCAAAGAGGTGGGGTTTGATAAAGGGGCGTGGCTCAGAAG 2924
2951 ----+----*----+----*----+----*----+----*----+----* 3000
msj08249 1659 CCACAGTGAAACATCCTTCAGCAAAGGGGGTCCAAGAACATAATTGTTGG 1708
| ||| || | ||||| | ||| | |||| |
sj04686 2925 GAATGGTGGGTAGGCCCTGGATTGAGGGGTGGAAGGAAACTCATTGAGGC 2974
3001 ----+----*----+----*----+----*----+----*----+----* 3050
msj08249 1709 GGAATTTCTCTCTGAAACCTA............................. 1729
| | | | | || |
sj04686 2975 TGGTTGGGTAAAGGGAGCCCAGGAAGCAGGAGGGAGGAGTTTAGAGTAGA 3024
3051 ----+----*----+----*----+----*----+----*----+----* 3100
msj08249 1730 .................................................. 1730
sj04686 3025 AGGGATGGAGTTTGTCTGGGGTGTGGCTTAGAGAAGTAGGTAGGCCTAGT 3074
3101 ----+----*----+----*----+----*----+----*----+----* 3150
msj08249 1730 .................................................. 1730
sj04686 3075 GAGGGGGGTGGAGTTTAAGGGTGTAATTTGGAGGGGTTTAATGCAACTAT 3124
3151 ----+----*----+----*----+----*----+----*----+----* 3200
msj08249 1730 .................................................. 1730
sj04686 3125 CAGGTCTTTATAATGAATGTGGAAAGGACTTGCAGGGGATGGGAATAGAC 3174
3201 ----+----*----+----*----+----*----+----*----+----* 3250
msj08249 1730 ......................CAGAGACTATTCACTTTGAGACCCCTGG 1757
|| | || | |||| | | |
sj04686 3175 TTCGTAGAGAAGGCCTGAGAAGGTGACGGGAGTCCAGTGGAGAGTCTTAG 3224
3251 ----+----*----+----*----+----*----+----*----+----* 3300
msj08249 1758 A....ATGTGGCATGTTCAAATCA.......................... 1777
| ||||||| | || ||| |
sj04686 3225 AAAGGATGTGGCTTCTTTAAAGGAAAAATTGGGTGGAGTTTTGGAAGTGG 3274
3301 ----+----*----+----*----+----*----+----*----+----* 3350
msj08249 1778 .....ACTGGCCTCCAAGACTGGGTACATAGTAATGAAAAACGGGTCTCC 1822
| ||| | | | | || ||| | || | |
sj04686 3275 GTCTTAGTGGACCCGAGAGGGGCTTAGATAAGTCAAATAACTTAGCAATC 3324
3351 ----+----*----+----*----+----*----+----*----+----* 3400
msj08249 1823 ACTAACATCTCTCTGAAGATAACATGTAGGCACCCCCATGATTTTAACCA 1872
| | | || | | | ||| || | ||| || ||
sj04686 3325 ATGGTAGGACTTAAGGAGGAATCCAGGAGGAACTTACGGGATAATAGTCA 3374
3401 ----+----*----+----*----+----*----+----*----+----* 3450
msj08249 1873 CCCTGTGAGCCAGCATTCCAGATCCTTCATCTAGAGAATGGGGGTGGGGC 1922
|| ||| | | || || | | | | |||
sj04686 3375 TCCAAACAGCTTACTTGTTGCGTCTTTGCTGTGCACCAGCTTAAGTAGGC 3424
3451 ----+----*----+----*----+----*----+----*----+----* 3500
msj08249 1923 A.....................ATATCTTAGACTCCTCCAGGAACCCCTC 1951
| | |||| | ||| | || |
sj04686 3425 ACGTAGCATTTATTGCCACAATTTTACTTAATTCTCGCCACCACTCCATG 3474
3501 ----+----*----+----*----+----*----+----*----+----* 3550
msj08249 1952 AAATGACACCTGCCAGCCACTGGTGACCCCAGAA.AATGAGTATAACCGA 2000
| | || | | | | | || ||| ||| ||| | |
sj04686 3475 AGGTAGGTACTACTATTCCCATTTTACAGATGAAGAATTTTTATTATCTG 3524
3551 ----+----*----+----*----+----*----+----*----+----* 3600
msj08249 2001 AATCTGCCTTCCGCCAATTTTGCTTCCTGTACTGAAAGAAGATCAGGGTA 2050
| | | | |||| || | | | | | | ||| ||
sj04686 3525 ATGTTAC..AGGACTAATTCTGGTCTCCCTGCAAGGATGACTCCAGTGTG 3572
3601 ----+----*----+----*----+----*----+----*----+----* 3650
msj08249 2051 GATGCCCCCCACCTTCAGTTAACCCACTCTCAGATTAGGTCTCCCTTACT 2100
| |||| | | | |||| || | | | |||| |||
sj04686 3573 CTTAGCCCCAAATCTTTGCCCTCCCATTCGCTAAGT.GGTCATCCTGGAA 3621
3651 ----+----*----+----*----+----*----+----*----+----* 3700
msj08249 2101 GCAGAATGGTCTGACCCTACTG..........................AT 2124
| || ||| || | || | |
sj04686 3622 GAGGAGTGGGAGGAGCTTAGAGGGGAGTGGGAGGGCCTTTTGGAAGGAAA 3671
3701 ----+----*----+----*----+----*----+----*----+----* 3750
msj08249 2125 CTTCCCCCATCCTGAACACTAGATTAGACTGGCCCTTTAGGTTGGACT.. 2172
| ||| || |||| || | || | |||||
sj04686 3672 AGGGCTTGGCAAAGAATACAAGATCCTTAGGGAACATTGTGGGGGACTTT 3721
3751 ----+----*----+----*----+----*----+----*----+----* 3800
msj08249 2173 .................................................A 2173
sj04686 3722 GAAGGGAGTAGGTGGGACTTAAGGAAGAGTGGGAGAGGCTTAAATTACAG 3771
3801 ----+----*----+----*----+----*----+----*----+----* 3850
msj08249 2174 ACCCAGATGCACATACTCCTATCCACTTGGAATGGGCTGGTGTCTGGAAT 2223
|| ||||| | | | | | | ||| | | |||
sj04686 3772 TGGGAGGGGCACAGAGAGCAGTGGCCGCGCATTGGCGAAGAGCGAGGA.. 3819
3851 ----+----*----+----*----+----*----+----*----+----* 3900
msj08249 2224 GGTTGTGGCCTAATCCCACTC..............TCCTTAGAGTAATAG 2259
| ||| ||| ||||| | | ||| ||
sj04686 3820 ....GAGGCTTAAAAACACTCCATGGAGTGAGGAGACTATGAAGTGATTA 3865
3901 ----+----*----+----*----+----*----+----*----+----* 3950
msj08249 2260 GGCAGACATTCCCTTATGCTGTAGAGCACAG..........TCCTTTGAC 2299
|| ||| || || | || || |||| | | || ||
sj04686 3866 GGAAGATTTTGCCACAGGC.GTGGAGCCGCGAGAGAAGGGTTTCTAAGAG 3914
3951 ----+----*----+----*----+----*----+----*----+----* 4000
msj08249 2300 CACGA.....TTTCCCAATCCTGTGACCTGGTGGAGGTGGTAGACATTGA 2344
| || || || || || | | | ||| | || ||
sj04686 3915 TAGGAGGATTTTAAAGAACAATGAGAGTGGCTTAGAGAGGTGGGCAGTGG 3964
4001 ----+----*----+----*----+----*----+----*----+----* 4050
msj08249 2345 GGCTTTC........................................... 2351
| ||
sj04686 3965 GAGGGTCTCCCAGGGGACAGGTGGTGAGTCTGGGAACCTGGGAGGAGAGA 4014
4051 ----+----*----+----*----+----*----+----*----+----* 4100
Y P L T C T L V F P S
msj08249 2352 ............CCTACCCCTTGACTTGTAGTACTTTGGTCTTTCCATCA 2389
|| ||||| | || || | | |||| ||| |
sj04686 4015 GCTGATGGGGAGCCGACCCCCTCACCTG...CTCCTCTGTCTCCCCACTA 4061
W G A D P L T C S S V S P L
4101 ----+----*----+----*----+----*----+----*----+----* 4150
L - L D S L F Q R P K -
msj08249 2390 CTACA............ACTTGACTCTTTGTTCCAACGTCCCAAGG.... 2423
|| || || | | || | |||| ||| ||
sj04686 4062 CTCCAGAGAGAGCCCCCACATACCACTGTATTCCCCGCCACCATGGATGA 4111
L Q R E P P H T T V F P A T M D D
4151 ----+----*----+----*----+----*----+----*----+----* 4200
msj08249 2424 .................................................. 2424
sj04686 4112 CGTCCCCGCCCCAACCCCTGCACCAGCACCGCCCGCCGCTGCCGCCCCCA 4161
V P A P T P A P A P P A A A A P R
4201 ----+----*----+----*----+----*----+----*----+----* 4250
msj08249 2424 .................................................. 2424
sj04686 4162 GGGTCCCGTTTCACTGCAGTGAATGTGGCAAGAGCTTCCGCTACCGCTCA 4211
V P F H C S E C G K S F R Y R S
4251 ----+----*----+----*----+----*----+----*----+----* 4300
G Y
msj08249 2424 .............................................GGATA 2428
| ||
sj04686 4212 GACCTGCGGCGCCACTTTGCCCGGCACACAGCGCTCAAGCCCCACGCATG 4261
D L R R H F A R H T A L K P H A C
4301 ----+----*----+----*----+----*----+----*----+----* 4350
G N L A R G F S L S L N L T P D
msj08249 2429 TGGGAACTTGGCCAGGGGTTTCTCTCCTGTGAGCCTCAACCTGACCCCTG 2478
| | || | || ||||||| | ||| ||||||| ||
sj04686 4262 TCCGCGCTGCGGCAAGGGTTTCAAGC...ACAGCTTCAACCTAGCCAACC 4308
P R C G K G F K H S F N L A N H
4351 ----+----*----+----*----+----*----+----*----+----* 4400
- S P
msj08249 2479 ACC.......................................CCTCTCCC 2489
||| ||| |||
sj04686 4309 ACCTGCGCTCGCACACCGGGGAGCGGCCCTACCGCTGCTCTGCCTGCCCC 4358
L R S H T G E R P Y R C S A C P
4401 ----+----*----+----*----+----*----+----*----+----* 4450
Q C L W D S
msj08249 2490 CAATGTCTCTGGGACTCC................................ 2507
| | || | ||||||
sj04686 4359 AAGGGGTTCCGCGACTCCACCGGCCTGCTGCACCACCAGGTCGTCCACAC 4408
K G F R D S T G L L H H Q V V H T
4451 ----+----*----+----*----+----*----+----*----+----* 4500
* T S F S -
msj08249 2508 .....AATAAACCTCATTCAGTC........................... 2525
| || ||| | | | |
sj04686 4409 TGGTGAGAAACCCTACTGCTGCCTGGTCTGCGAGCTCCGCTTCTCCTCAC 4458
G E K P Y C C L V C E L R F S S R
4501 ----+----*----+----*----+----*----+----*----+----* 4550
msj08249 2526 .................................................. 2526
sj04686 4459 GCTCCAGCCTGGGCCGCCACCTCAAGCGCCAGCACCGTGGGGTTCTCCCC 4508
S S L G R H L K R Q H R G V L P
4551 ----+----*----+----*----+----*----+----*----+----* 4600
msj08249 2526 .................................................. 2526
sj04686 4509 TCTCCCCTGCAGCCCGGCCCTGGCCTGCCCGCCTTGAGTGCGCCCTGCTC 4558
S P L Q P G P G L P A L S A P C S
4601 ----+----*----+----*----+----*----+----*----+----* 4650
msj08249 2526 .................................................. 2526
sj04686 4559 CGTCTGCTGCAATGTGGGGCCCTGCTCGGTGTGCGGGGGCTCAGGGGCCG 4608
V C C N V G P C S V C G G S G A G
4651 ----+----*----+----*----+----*----+----*----+----* 4700
msj08249 2526 .................................................. 2526
sj04686 4609 GCGGCGGAGAGGGCCCCGAGGGGGCAGGCGCGGGTCTGGGCAGCTGGGGG 4658
G G E G P E G A G A G L G S W G
4701 ----+----*----+----*----+- 4726
msj08249 2526 .......................... 2526
sj04686 4659 CTGGCAGAGGCGGCAGCTGCGGCCGC 4684
L A E A A A A A