Comparison of KIAA cDNA sequences between mouse and human (FLJ00138)
<<Original sequence data>>
mouse mFLJ00138 (msj07247) length: 2345 bp, CDS: 1 - 1350
human (sh03216) length: 5595 bp, CDS: 2 - 931
In this page, the longest coding region predicted by GeneMark
was assigned as CDS for each of mouse and human KIAA cDNAs.
They were colored in green. When the CDS positions were not identical
on the aligned sequences between mouse and human cDNAs, mouse cDNA
sequence was translated based on the human CDS information.
The amino acid sequence produced here may not be identical to the
protein sequence deduced (see Description).
<<Aligned sequence information>>
----------------------------------------------------------
region #match #mismatch %diff
----------------------------------------------------------
DNA
5'UTR: 438 - 438 1 0 0.0
CDS: 439 - 1371 767 146 16.0
3'UTR: 1372 - 5971 651 345 34.6
amino acid
CDS: 439 - 1371 260 50 16.1
----------------------------------------------------------
<<Alignment>>
1 ----+----*----+----*----+----*----+----*----+----* 50
msj07247 1 CTGAAGACCGCGTCGGAGCGCGCCCGGCCCGGGGGCGCCGGCGGCAAGCC 50
sh03216 1 .................................................. 1
51 ----+----*----+----*----+----*----+----*----+----* 100
msj07247 51 GCGCAAGAACTCGGAGACTGGCGGCGCGGCGCCCACCCCGGGCAAGGGCC 100
sh03216 1 .................................................. 1
101 ----+----*----+----*----+----*----+----*----+----* 150
msj07247 101 GGAAGAACTCAGCGGCCGAGCTGGGGGCCAGCAAGGCGAGCAGCGGACCC 150
sh03216 1 .................................................. 1
151 ----+----*----+----*----+----*----+----*----+----* 200
msj07247 151 CCAAAGGACAGTCGGCTGTCCCGGGACAGCCTGCAGGGTCTGATCCAGGC 200
sh03216 1 .................................................. 1
201 ----+----*----+----*----+----*----+----*----+----* 250
msj07247 201 CGCTGCTGGCAAAGGCCGTAAGAACTCCCGGGTCACCGCCACCGCCACCG 250
sh03216 1 .................................................. 1
251 ----+----*----+----*----+----*----+----*----+----* 300
msj07247 251 AGGAGGAGCCCCACCGTGGCGCGGTGACCAAGAGCGCGGGCTGCAGCACC 300
sh03216 1 .................................................. 1
301 ----+----*----+----*----+----*----+----*----+----* 350
msj07247 301 TACATCAGTAGGCTCATCAAGGTGGACACGCAGGAGAAGAATGGGAAGAG 350
sh03216 1 .................................................. 1
351 ----+----*----+----*----+----*----+----*----+----* 400
msj07247 351 CGCCTACCCGGGCGGTGGCAGCACCAGCAGCTCCAGCAGCTCCTCTTCCT 400
sh03216 1 .................................................. 1
401 ----+----*----+----*----+----*----+----*----+----* 450
D K A K
msj07247 401 CTGCGTCCTCTTCCCCGTCCTCCCTGGGCCCTGAGCTGGACAAGGCCAAG 450
|||||||| ||||
sh03216 1 .....................................GGACAAGGGCAAG 13
D K G K
451 ----+----*----+----*----+----*----+----*----+----* 500
I M R Q Q D T V I I L E D Y A D P
msj07247 451 ATAATGAGACAGCAAGACACGGTCATCATTTTAGAGGACTACGCTGACCC 500
|| || | |||||||| ||||||||||||||||| ||||| ||||||||
sh03216 14 ATTATTAAGCAGCAAGAGACGGTCATCATTTTAGAAGACTATGCTGACCC 63
I I K Q Q E T V I I L E D Y A D P
501 ----+----*----+----*----+----*----+----*----+----* 550
Y D A K R T K G Q R D A E R V G E
msj07247 501 GTATGATGCCAAACGGACGAAAGGTCAAAGGGATGCGGAGAGAGTGGGTG 550
||||||||||||||||| || |||||||||||||| |||||||| || |
sh03216 64 TTATGATGCCAAACGGACAAAGGGTCAAAGGGATGCAGAGAGAGTCGGAG 113
Y D A K R T K G Q R D A E R V G E
551 ----+----*----+----*----+----*----+----*----+----* 600
N D G Y M E P Y D A Q Q M I T E
msj07247 551 AGAACGACGGCTACATGGAACCGTACGATGCACAACAGATGATAACAGAA 600
|||||||||| ||||||||||| || |||||||| || ||||||||||||
sh03216 114 AGAACGACGGTTACATGGAACCATATGATGCACAGCAAATGATAACAGAA 163
N D G Y M E P Y D A Q Q M I T E
601 ----+----*----+----*----+----*----+----*----+----* 650
I R R R G S K D P L V K A L Q L L
msj07247 601 ATCAGACGCCGTGGTTCCAAAGATCCCCTGGTGAAGGCCCTCCAGTTGCT 650
|| ||||| || |||||||||||||||||||||||||| |||||| ||||
sh03216 164 ATTAGACGACGGGGTTCCAAAGATCCCCTGGTGAAGGCTCTCCAGCTGCT 213
I R R R G S K D P L V K A L Q L L
651 ----+----*----+----*----+----*----+----*----+----* 700
D G P S E P G E T - K V E A T A
msj07247 651 TGATGGCCCGAGTGAACCAGGGGAGACTG...TGAAGGTGGAGGCCACAG 697
||| | || ||||||| | || || |||| ||| || |
sh03216 214 TGACAGTCCCTGTGAACCCGCAGACGGTGGCCTGAAATCAGAGACCTTGG 263
D S P C E P A D G G L K S E T L A
701 ----+----*----+----*----+----*----+----*----+----* 750
K R R S S K D L L G K P P Q L Y
msj07247 698 CCAAGAGACGCAGCTCCAAGGACCTGCTGGGGAAGCCGCCACAACTCTAT 747
|||| ||||| || ||||||||||| ||||||||||||||||| || ||
sh03216 264 CCAAAAGACGGAGTTCCAAGGACCTCCTGGGGAAGCCGCCACAGCTATAC 313
K R R S S K D L L G K P P Q L Y
751 ----+----*----+----*----+----*----+----*----+----* 800
D T P Y E P S E G G Q R A E V K
msj07247 748 GACACCCCGTACGAGCCTTCGGAGGGTGGCCAACGTGTGGCAGAGGTGAA 797
||||| || ||||||||| | || || || | | |||||||| |||
sh03216 314 GACACTCCCTACGAGCCTGCAGAAGGGGGGCCCAG...GGCAGAGGGGAA 360
D T P Y E P A E G G P R A E G K
801 ----+----*----+----*----+----*----+----*----+----* 850
T R P A D S R L P E E D D R P A A
msj07247 798 GACGCGGCCAGCAGACAGCAGGCTACCAGAGGAGGATGATCGGCCCGCTG 847
| ||||||| |||||||| |||| || ||| | || || ||||||| |
sh03216 361 GGCGCGGCCCCCAGACAGCCGGCTGCCCGAGAACGACGAGAGGCCCGCGG 410
A R P P D S R L P E N D E R P A A
851 ----+----*----+----*----+----*----+----*----+----* 900
E Y E Q P W E W K R E Q I A R A
msj07247 848 CTGAGTATGAACAGCCCTGGGAGTGGAAGAGGGAGCAGATCGCGAGAGCC 897
| ||||| || ||||| ||||||||||||| ||||||||||| | | ||
sh03216 411 CAGAGTACGAGCAGCCATGGGAGTGGAAGAAGGAGCAGATCGTGCGGGCT 460
E Y E Q P W E W K K E Q I V R A
901 ----+----*----+----*----+----*----+----*----+----* 950
L S V Q F E G S D R P P G R E D A
msj07247 898 CTGTCAGTCCAGTTTGAGGGATCTGATCGACCTCCGGGCAGAGAGGATGC 947
||||||||||||||||| ||| |||| |||||| | ||| ||||| |
sh03216 461 CTGTCAGTCCAGTTTGAAGGAGCTGAGCGACCTTCCTTCAGGGAGGAGAC 510
L S V Q F E G A E R P S F R E E T
951 ----+----*----+----*----+----*----+----*----+----* 1000
G R P H H W Q K T - K P
msj07247 948 AGGGAGACCGCACCACTGGCAGAAGACCT...............TGAAGC 982
|| ||| | ||||||| ||||||||| || ||||||
sh03216 511 AGTGAGGCAGCACCACCGGCAGAAGAGCTGGACCCAGAAGATCCTGAAGC 560
V R Q H H R Q K S W T Q K I L K P
1001 ----+----*----+----*----+----*----+----*----+----* 1050
T L S D H G D G E K V D P G L A
msj07247 983 CGACCCTGTCAGACCACGGTGATGGGGAGAAGGTGGACCCAGGCCTGGCC 1032
| |||| || |||||| |||| || ||||| |||||||| |||||| ||
sh03216 561 CAGCCCTCTCGGACCACAGTGAGGGAGAGAAAGTGGACCCGGGCCTGCCC 610
A L S D H S E G E K V D P G L P
1051 ----+----*----+----*----+----*----+----*----+----* 1100
L E K Q P W Y H G S I S R A E A E
msj07247 1033 CTGGAAAAACAACCTTGGTATCACGGCTCCATCAGCCGAGCTGAGGCCGA 1082
||||| || || || |||||||| || |||||||||| |||||||| ||
sh03216 611 CTGGAGAAGCAGCCCTGGTATCATGGTGCCATCAGCCGTGCTGAGGCTGA 660
L E K Q P W Y H G A I S R A E A E
1101 ----+----*----+----*----+----*----+----*----+----* 1150
S R L Q P C K E A A Y L V R N S E
msj07247 1083 GAGCCGACTACAGCCCTGCAAAGAAGCCGCTTACCTGGTCCGGAACAGTG 1132
||| ||||||||||||||||||||||| | ||||||||| || || ||||
sh03216 661 GAGTCGACTACAGCCCTGCAAAGAAGCTGGTTACCTGGTTCGAAATAGTG 710
S R L Q P C K E A G Y L V R N S E
1151 ----+----*----+----*----+----*----+----*----+----* 1200
S G N S K Y S I A L K T S Q G C
msj07247 1133 AGTCAGGGAACAGCAAGTATTCCATTGCACTGAAGACGAGTCAAGGGTGT 1182
||||||||||||||| ||| |||||||| || ||||| |||||||| |||
sh03216 711 AGTCAGGGAACAGCAGGTACTCCATTGCCCTAAAGACTAGTCAAGGATGT 760
S G N S R Y S I A L K T S Q G C
1201 ----+----*----+----*----+----*----+----*----+----* 1250
V H I I V A Q T K D N K Y T L N Q
msj07247 1183 GTCCACATCATAGTGGCTCAGACAAAAGACAACAAATACACACTGAACCA 1232
||||||||||||||||||||||| ||||||||||||||||||||||| ||
sh03216 761 GTCCACATCATAGTGGCTCAGACCAAAGACAACAAATACACACTGAATCA 810
V H I I V A Q T K D N K Y T L N Q
1251 ----+----*----+----*----+----*----+----*----+----* 1300
T S A V F D S I P E V V H Y Y S N
msj07247 1233 GACGAGCGCTGTGTTTGACAGCATCCCTGAAGTGGTACACTATTACTCCA 1282
||| ||||||||||||||||||||||||||||||||||||||||| ||||
sh03216 811 GACAAGCGCTGTGTTTGACAGCATCCCTGAAGTGGTACACTATTATTCCA 860
T S A V F D S I P E V V H Y Y S N
1301 ----+----*----+----*----+----*----+----*----+----* 1350
A K L P F K G A E H M T L L H P
msj07247 1283 ATGCAAAGCTGCCTTTCAAAGGAGCAGAGCACATGACCCTTCTCCATCCA 1332
||| |||| ||||||||||||| ||||| |||||||| | ||| | |||
sh03216 861 ATGAAAAGTTGCCTTTCAAAGGGGCAGAACACATGACTTTACTCTACCCA 910
E K L P F K G A E H M T L L Y P
1351 ----+----*----+----*----+----*----+----*----+----* 1400
V - K L H *
msj07247 1333 GTGCA...CAAGCTCCACTAA.AGTCGGCCAGCAAGAGCC........CG 1370
||||| |||||| |||||| | || |||| |||| |
sh03216 911 GTGCACAGCAAGCTTCACTAAGATTCAGCCACTGCAAGCCCTGGGCCTCT 960
V H S K L H *
1401 ----+----*----+----*----+----*----+----*----+----* 1450
msj07247 1371 GGCACCTGTGAGGCCTTCAGCACCCAACAA.CATCAT....GTGGACAGG 1415
||||||| ||| | ||| || | |||| || ||| | ||||| |
sh03216 961 GGCACCTTCAAGGGCATCATCAGCGCACAACCAGCATCTCAGAGGACAAG 1010
1451 ----+----*----+----*----+----*----+----*----+----* 1500
msj07247 1416 ACTCG..CTGCTGCTGCTGCAGACCAGGAGTCGGCGCCTAGAAGTCA... 1460
|| | || ||||| | | |||||| | | ||||||
sh03216 1011 GCTGGACTAGCAACTGCTAGAAAATGGGAGTCTTCCTTGAAAAGTCAGAG 1060
1501 ----+----*----+----*----+----*----+----*----+----* 1550
msj07247 1461 .................................................. 1461
sh03216 1061 AGTGATTTGTTTTGTTTTGTTTGAGACGAAGTCTCGCTGTGTTGCCCAGG 1110
1551 ----+----*----+----*----+----*----+----*----+----* 1600
msj07247 1461 .................................................. 1461
sh03216 1111 CTGGAGTGCAATGGCGCAGTCTTGGCTCACTGCAACATCTGACTCCTGGG 1160
1601 ----+----*----+----*----+----*----+----*----+----* 1650
msj07247 1461 .................................................. 1461
sh03216 1161 TTCAAGCAGTTCTTCCCCATCAGCCTCCCAAGTAGGTGGGACTATAGGTT 1210
1651 ----+----*----+----*----+----*----+----*----+----* 1700
msj07247 1461 .................................................. 1461
sh03216 1211 CGCACCACCACTCCCAGCTAATTTTTTTTTTGTATTTTTAGTAGAGATGG 1260
1701 ----+----*----+----*----+----*----+----*----+----* 1750
msj07247 1461 .................................................. 1461
sh03216 1261 GGTTTCGCCGTCTTCGTCAGGCTGGTCTCAAACTCCTGACCTCAAATGAT 1310
1751 ----+----*----+----*----+----*----+----*----+----* 1800
msj07247 1461 .................................................. 1461
sh03216 1311 CCACCCACCTCAGTCTCCCCGAGTGCCTGGATTACAGGCATGAGCCACTG 1360
1801 ----+----*----+----*----+----*----+----*----+----* 1850
msj07247 1461 .......AGCGGTCTGTGGTCTTAAA.....TCCAGGACACAGTGGTTTC 1498
|||| |||||||||| |||| ||||| | ||||
sh03216 1361 CACCCGGCCAAGTCTTTGGTCTTAAAGTGATTCCATGACAC.TTTGTTTG 1409
1851 ----+----*----+----*----+----*----+----*----+----* 1900
msj07247 1499 TGACCTGTTCTTTCTCTCC............CTACTACAAGAAAGTATTG 1536
|| ||||| | || | ||| |||| | |||||| ||
sh03216 1410 TGGCCTGTCCCTTGTTTCCTTGCAAGTAGTTCTACAATAAGAAATCATGA 1459
1901 ----+----*----+----*----+----*----+----*----+----* 1950
msj07247 1537 CTTGCCTGCCACCTTCTCCCTTGGGCTA.GGAGTTCTGTTTGGAGTGTGA 1585
|| ||| ||| | | |||| || || ||||| ||| ||||||
sh03216 1460 TTTAGCTGTTGCCTCCAGCTCTGGGGTAGGGTGTTCTTTTTATGGTGTGA 1509
1951 ----+----*----+----*----+----*----+----*----+----* 2000
msj07247 1586 GCCTTAGGAAGGTTAGATCCAGAGCCCAGGAGCA.........CTGAGCT 1626
||| |||||||||| || ||| |||||||| ||
sh03216 1510 CCCTCAGGAAGGTTAAGTCAGGAGTTCAGGAGCATCAGAGTTCTCTAGAA 1559
2001 ----+----*----+----*----+----*----+----*----+----* 2050
msj07247 1627 TAGCCCTTGGCTGTTCTCTGGCATGCCTGGCCTCTGCACAA......CAG 1670
| | | |||| |||| || ||||| |||| |||| |
sh03216 1560 ATGTGCCTACTTGTTACCTGGAATACCTGGTCTCTAAACAAACCAGCAAA 1609
2051 ----+----*----+----*----+----*----+----*----+----* 2100
msj07247 1671 AGAACCCCTAGGCCTTTATGAGTGACTG.CTAGGCTGGAAGATCCTGCCA 1719
| | || | ||| ||| ||| | || |||||||| || |
sh03216 1610 AAATCCACGTGGCTTTTCCACATGATGGTGCAGACTGGAAGAGGATGTTA 1659
2101 ----+----*----+----*----+----*----+----*----+----* 2150
msj07247 1720 .GTGTGAGCCCTTTGTGAGGAAGTGGATGGACGGTGGGAAACAGGAACGA 1768
| || | || || |||| || ||| ||| | ||| ||| ||
sh03216 1660 TATTGGACTCGTTATTGGGGAAATGAATGAGCGGGAGAAAATGTGAATGA 1709
2151 ----+----*----+----*----+----*----+----*----+----* 2200
msj07247 1769 TGGGCAGGAAAGCTGTCTTTCTCC.....ACGTCCTGATGCAGCTGTGGC 1813
||||| ||| | |||||||||| | ||||| || ||||| |||
sh03216 1710 CGGGCAAGAAGGTGGTCTTTCTCCCTCAGAAGTCCTAATTCAGCTCTGGA 1759
2201 ----+----*----+----*----+----*----+----*----+----* 2250
msj07247 1814 CTTCACACAGCATTCACAACCTGAGGACTTCACAAGAGTATTATTTGGTT 1863
|||| | || | |||| | || | | || ||||||| |||
sh03216 1760 GTTCATGGA.AATCCGCAACTTCAGAGTGTGGCCTAAGGATTATTTTGTT 1808
2251 ----+----*----+----*----+----*----+----*----+----* 2300
msj07247 1864 GGCTCTCCT........AAGTACTTGCTTTCTCAATTTCTCTGGACATCT 1905
|| ||| |||| || | ||||||| ||| |||| |
sh03216 1809 GGTCAGCCTTTCCAAGAAAGTGTGTGTTCTCTCAATCTCTGTGGA...TT 1855
2301 ----+----*----+----*----+----*----+----*----+----* 2350
msj07247 1906 CTATCCTTCTGCAGTAAATCAGTGATATGAGCAGAAATTGGACGGAGG.. 1953
| || || | || |||||||||| || |||| |||| ||| ||| |
sh03216 1856 TTCTCATTTTTTAGCAAATCAGTGAGATAAGCATAAATAGGAAGGAAGAT 1905
2351 ----+----*----+----*----+----*----+----*----+----* 2400
msj07247 1954 CCCCCAGATGAAAGTGTTACCAGTGTAATCAAGAGGTGGCATCCTTTCTA 2003
|||||| | ||| | |||| | | || | | ||||||| || ||
sh03216 1906 ACCCCAGGTTTAAGAATCACCAATATCATTAGGCATTGGCATCATTATTA 1955
2401 ----+----*----+----*----+----*----+----*----+----* 2450
msj07247 2004 TAACTCTGATCGTT...ATTAAGTGCACTCCAAAGATTTGATTTCTGATT 2050
|| ||||| | || || | || |||| |||| |||||||| |
sh03216 1956 GAATTCTGAATTATAGAATAAAAGGTACAACAAAAATTTCATTTCTGAAT 2005
2451 ----+----*----+----*----+----*----+----*----+----* 2500
msj07247 2051 TAAAAAA....AAAATTCTACAGAGCTCAACACCTGTTTTGTTATTGGA. 2095
| |||| || | | || ||||| ||| ||||||| ||| || |
sh03216 2006 TTTAAAATTCTGGAAATTTGCAAAGCTCCACAACTGTTTTTTTACTGAAT 2055
2501 ----+----*----+----*----+----*----+----*----+----* 2550
msj07247 2096 TAATTACATAGCACTCGAGACAGCCTTTTTCTTTGTGGTTTTTTTGTTTT 2145
||||||||||| || ||| ||| ||| ||| |
sh03216 2056 TAATTACATAGAAC..............TTCGATGTCTTTTGTTTCATCA 2091
2551 ----+----*----+----*----+----*----+----*----+----* 2600
msj07247 2146 TGTTTTTTTTTGTTTTTTTGCATGAAATCATCTTTAAGATTCCTTTCTGA 2195
| || | || || ||| ||| || ||||| || | ||| |
sh03216 2092 TCATTGGGCATTTTAGTTGCTATGGAATAATTTTTAATTTTTGTCTCTAA 2141
2601 ----+----*----+----*----+----*----+----*----+----* 2650
msj07247 2196 AATTAGATTTGCTTTGTAATTTTTGGCAAAAAATTTTTACAA...CAAAA 2242
|||||||||||||||||| | ||| |||||| || |||
sh03216 2142 AATTAGATTTGCTTTGTAGT.........AAATTTTTTAAAAATGCAACC 2182
2651 ----+----*----+----*----+----*----+----*----+----* 2700
msj07247 2243 TTGGGATCCCATTGTATGAACTGAGTCGCT..GGTCTGAAAAGATTGCC. 2289
| |||| ||| ||||||||| ||| || | || ||||||| |
sh03216 2183 CTAAGATCTGATTATATGAACTGGGTCTCTAAAGCCTACAAAGATTCTCT 2232
2701 ----+----*----+----*----+----*----+----*----+----* 2750
msj07247 2290 .................................................. 2290
sh03216 2233 CGTTCTGTACCAAGCAGACTGCCTTGTACTATACAGAAGTGTTTGAAAAG 2282
2751 ----+----*----+----*----+----*----+----*----+----* 2800
msj07247 2290 .................................................. 2290
sh03216 2283 ACCTAGAGGTTTTCTCTTAAATACCATTACTTAAGATTCATAGTATTAGG 2332
2801 ----+----*----+----*----+----*----+----*----+----* 2850
msj07247 2290 .................................................. 2290
sh03216 2333 ATCTTTATGATTTATCATGAGCTTATATCACCAGTTTATTTACTGTGAAA 2382
2851 ----+----*----+----*----+----*----+----*----+----* 2900
msj07247 2290 .................................................. 2290
sh03216 2383 AAAACCATGGGAATGGCATACTGTGAGAAGAGTACTATGGTGAATGGCTC 2432
2901 ----+----*----+----*----+----*----+----*----+----* 2950
msj07247 2290 .................................................. 2290
sh03216 2433 CAGAATTAAAATTCAGCAGATGTGTCTGTATTCTGGGGTTGGTCATTTGG 2482
2951 ----+----*----+----*----+----*----+----*----+----* 3000
msj07247 2290 .................................................. 2290
sh03216 2483 GTCTCAAAACTGCCCCATATGCAAATGTACTGACTGTCATCAATGAAAAG 2532
3001 ----+----*----+----*----+----*----+----*----+----* 3050
msj07247 2290 .................................................. 2290
sh03216 2533 TTAACCTTTGTAGCTTATAAATACACACAAAATGTTGATTTGGTTAATTT 2582
3051 ----+----*----+----*----+----*----+----*----+----* 3100
msj07247 2290 .................................................. 2290
sh03216 2583 TTTAGGAAAGTATACCTTTGTAGTTACTAGTTACATTTGACTGTAAGATT 2632
3101 ----+----*----+----*----+----*----+----*----+----* 3150
msj07247 2290 .................................................. 2290
sh03216 2633 TAGAGGTTAGTAAATTTTTGCTTCTTTATTCAGATAAGATCTCAGCCAAA 2682
3151 ----+----*----+----*----+----*----+----*----+----* 3200
msj07247 2290 .................................................. 2290
sh03216 2683 AGGTTGTGTGATCTTTGATTTTAAAAATTTAAGAGGAACTTTTCCTCACT 2732
3201 ----+----*----+----*----+----*----+----*----+----* 3250
msj07247 2290 .................................................. 2290
sh03216 2733 GGAACACAATGATTTTATTAATAAAGAATGTAGGCTGGGTGCGGTGGCTC 2782
3251 ----+----*----+----*----+----*----+----*----+----* 3300
msj07247 2290 .................................................. 2290
sh03216 2783 ATGCACGTAATCCCAACAATTTGGGAGGCTGAGGCAGGCAGATCACGTGA 2832
3301 ----+----*----+----*----+----*----+----*----+----* 3350
msj07247 2290 .................................................. 2290
sh03216 2833 GGTCAGGAGTTTGGGACCGGCCTGGCCAACATGGTGAAACCCTGTCTCTA 2882
3351 ----+----*----+----*----+----*----+----*----+----* 3400
msj07247 2290 .................................................. 2290
sh03216 2883 GTAAAAATACAAAAATTAGCTGGGCACGGTGGCGGGCACCTGTAGTTCCA 2932
3401 ----+----*----+----*----+----*----+----*----+----* 3450
msj07247 2290 .................................................. 2290
sh03216 2933 GCTGCTTGGGAGGCTGAGGCACGAGAATCACTTGAGCCCAGGAGGTGGAG 2982
3451 ----+----*----+----*----+----*----+----*----+----* 3500
msj07247 2290 .................................................. 2290
sh03216 2983 GTTGCAGTGAGCCAAGATTGTGTCACTGCACTCCATCCTGGGTGACAAGA 3032
3501 ----+----*----+----*----+----*----+----*----+----* 3550
msj07247 2290 .................................................. 2290
sh03216 3033 GCGAAACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGCCTGGCCTGGTGG 3082
3551 ----+----*----+----*----+----*----+----*----+----* 3600
msj07247 2290 .................................................. 2290
sh03216 3083 TGGATGCCTGTGGTTCCAGCTATTCGGGAGGCTGAGGTAGGTGGATCACC 3132
3601 ----+----*----+----*----+----*----+----*----+----* 3650
msj07247 2290 .................................................. 2290
sh03216 3133 TCTGCTCAGGTCAAGGCTGCAGCGAGCCATGATCGCACCATTGCACTCCA 3182
3651 ----+----*----+----*----+----*----+----*----+----* 3700
msj07247 2290 .................................................. 2290
sh03216 3183 GCCTGAGTGACAGAGTGAGACCCTGTCTCAACAAGCAAGCAAACAAAAAA 3232
3701 ----+----*----+----*----+----*----+----*----+----* 3750
msj07247 2290 .................................................. 2290
sh03216 3233 CCAAAAGGAATGTTTTTTTCAGATACTGATAGAATGTTTTCAGTGTGTAT 3282
3751 ----+----*----+----*----+----*----+----*----+----* 3800
msj07247 2290 .................................................. 2290
sh03216 3283 TGGTTCATTTACTATATCTTTAGTGTAAGATTTTAAAAGGTTTTTTCAGC 3332
3801 ----+----*----+----*----+----*----+----*----+----* 3850
msj07247 2290 .................................................. 2290
sh03216 3333 ATCCATTCAACAAATATTTATTATCTTTATACAAATTATTCATTGTGTTA 3382
3851 ----+----*----+----*----+----*----+----*----+----* 3900
msj07247 2290 .................................................. 2290
sh03216 3383 AACTTATTTTTAGTTTAACATTCTAGAAATGAAACGTTTTTACTTAACCT 3432
3901 ----+----*----+----*----+----*----+----*----+----* 3950
msj07247 2290 .................................................. 2290
sh03216 3433 TATTCTACAAAGGGAATACAGCAGTTATTCTAATTTTAATAAATGCTAAA 3482
3951 ----+----*----+----*----+----*----+----*----+----* 4000
msj07247 2290 .................................................. 2290
sh03216 3483 AGCTTTATACAATTTTTCTTTGTGCACTAAATGATTTTTGGCCCATACCC 3532
4001 ----+----*----+----*----+----*----+----*----+----* 4050
msj07247 2290 .................................................. 2290
sh03216 3533 AGCAACTGTGATGAATGTATAATGAAATAACATCTTGAAAACAGGCCAGA 3582
4051 ----+----*----+----*----+----*----+----*----+----* 4100
msj07247 2290 .................................................. 2290
sh03216 3583 TACATTAAGTATTTATTGAGCTTCTGTCATATGCCCAGTATTATGCTTCT 3632
4101 ----+----*----+----*----+----*----+----*----+----* 4150
msj07247 2290 .................................................. 2290
sh03216 3633 TCTATACTGTTTCTCTGTGACAAGTCATACTATATTCTTTATAGAATTAA 3682
4151 ----+----*----+----*----+----*----+----*----+----* 4200
msj07247 2290 .................................................. 2290
sh03216 3683 AAGTAGAGGAGAGGCAGAGTTTACATATTGTCCAGTTGCTTTACAGTTGT 3732
4201 ----+----*----+----*----+----*----+----*----+----* 4250
msj07247 2290 .................................................. 2290
sh03216 3733 ACAGGAGGTTATAAGAAGAAATATAGTAAATTAGTGGGAAGTCAGAGGTG 3782
4251 ----+----*----+----*----+----*----+----*----+----* 4300
msj07247 2290 ........................CCTGATGTACAGACAGAACAAGCCAA 2315
| ||| || |||| || | |||
sh03216 3783 GGGGCGTTAGTGAGCTATTTTCTTCTTGAGGTTGTGACACAAGCTGACAA 3832
4301 ----+----*----+----*----+----*----+----*----+----* 4350
msj07247 2316 TA................................................ 2317
|
sh03216 3833 AAGCCAGGGAGTTCACAGCTGTGTGGTGGCACAAAGTTCCATATGTTCTA 3882
4351 ----+----*----+----*----+----*----+----*----+----* 4400
msj07247 2318 .................................................. 2318
sh03216 3883 AAAACAATTAGGCCCAGCAGGGTGTCCCTAATGGCTTCCTTGTTAAACCT 3932
4401 ----+----*----+----*----+----*----+----*----+----* 4450
msj07247 2318 .................................................. 2318
sh03216 3933 CCATGGCCAGCTGATCTGAAGCTCTGTGACATGTTCTCTGAGCTCTGAAT 3982
4451 ----+----*----+----*----+----*----+----*----+----* 4500
msj07247 2318 .................................................. 2318
sh03216 3983 GCTCTGGCTTTTTGTCATTTTGTCTTGAGACAAGTATTTTCCTGTAGTCC 4032
4501 ----+----*----+----*----+----*----+----*----+----* 4550
msj07247 2318 .................................................. 2318
sh03216 4033 TCATTCCTTCGAGTTATTCCATCTCCCAGGATATTCTCTGGTGAGAAGAA 4082
4551 ----+----*----+----*----+----*----+----*----+----* 4600
msj07247 2318 .................................................. 2318
sh03216 4083 TGTCTTTCAGTGAATTTGCCCTTGAATTTAGCATCCATAGAGCTGTGTCA 4132
4601 ----+----*----+----*----+----*----+----*----+----* 4650
msj07247 2318 .................................................. 2318
sh03216 4133 GTGTTCTTCTTGATCACACCTTCTTTAAAAAAAATACTTGCTTGCGATGA 4182
4651 ----+----*----+----*----+----*----+----*----+----* 4700
msj07247 2318 .................................................. 2318
sh03216 4183 CTGGACAAGTTCAGTTGGTTAGTTTCAGGCCTATAAGAAGAGAGAGTAAA 4232
4701 ----+----*----+----*----+----*----+----*----+----* 4750
msj07247 2318 .................................................. 2318
sh03216 4233 GGACCTTGCTATTTACTTTGATACCATAGTTGTATCTCAGGATGGCCTGC 4282
4751 ----+----*----+----*----+----*----+----*----+----* 4800
msj07247 2318 .................................................. 2318
sh03216 4283 AAACCACTGGCCTTGTGTGTATTTAAGCTAGGAATAAAATAATGGAGAAG 4332
4801 ----+----*----+----*----+----*----+----*----+----* 4850
msj07247 2318 .................................................. 2318
sh03216 4333 TGTTAATATGTATACAAAAAGGTAAATATTGATATATCTACTCTCTGTTG 4382
4851 ----+----*----+----*----+----*----+----*----+----* 4900
msj07247 2318 .................................................. 2318
sh03216 4383 GGGGCAGAAGTGTCATTTTAAGTTATTCAAAGCACTTTCTTAAGCATTTT 4432
4901 ----+----*----+----*----+----*----+----*----+----* 4950
msj07247 2318 .................................................. 2318
sh03216 4433 AGAAAGCCTTTATTCTTTGCTGTTGGAAGTCTCCGTACTTTGCAGAATTG 4482
4951 ----+----*----+----*----+----*----+----*----+----* 5000
msj07247 2318 .................................................. 2318
sh03216 4483 GTATTTGTGTACTAGCCTCTGCCGCAGGATGGGGAGGTGGGCAGGTAGCT 4532
5001 ----+----*----+----*----+----*----+----*----+----* 5050
msj07247 2318 .................................................. 2318
sh03216 4533 GATAGGGGCAGCCAGGAGTTTTTGAGGCAGGTGGTGGGAAATTGTCCTAA 4582
5051 ----+----*----+----*----+----*----+----*----+----* 5100
msj07247 2318 .................................................. 2318
sh03216 4583 TTTGTTAATTGGATTATGTAACTCTGTTACTAGTCTGTTATTGGCTGTTG 4632
5101 ----+----*----+----*----+----*----+----*----+----* 5150
msj07247 2318 .................................................. 2318
sh03216 4633 TTACTGGATGCATCTTGATATTCAGAAGAATAACTGTGAGGCATTCTTCA 4682
5151 ----+----*----+----*----+----*----+----*----+----* 5200
msj07247 2318 .................................................. 2318
sh03216 4683 GTTGCGGGTTAAGTGGGGTTAGTTTCTGTTCTGTCAGATGCCCTTTTTTC 4732
5201 ----+----*----+----*----+----*----+----*----+----* 5250
msj07247 2318 .................................................. 2318
sh03216 4733 AGTCAAAGGTTAGCCCCTTGTTTCTCCCTCCTTCCAGGGTTTAGGGAGTG 4782
5251 ----+----*----+----*----+----*----+----*----+----* 5300
msj07247 2318 .................................................. 2318
sh03216 4783 CAGTGATGTCGATTTCATTTCCCTTCCCCGCACCCCTTGACACTCAGCAG 4832
5301 ----+----*----+----*----+----*----+----*----+----* 5350
msj07247 2318 .................................................. 2318
sh03216 4833 GATTGCACTGAAACCCTTCACAATCTCTCGTTCACTAGTTGTCTCCTATT 4882
5351 ----+----*----+----*----+----*----+----*----+----* 5400
msj07247 2318 .................................................. 2318
sh03216 4883 TTTCCATAACTAGCACTAGTTTGGCCTTATGACCTGGTTAGAATCACTCT 4932
5401 ----+----*----+----*----+----*----+----*----+----* 5450
msj07247 2318 .................................................. 2318
sh03216 4933 TCTGTATTCTCATTTCCAATTTTTGTGCCCCACTAACGTGGACTAGAGAA 4982
5451 ----+----*----+----*----+----*----+----*----+----* 5500
msj07247 2318 .................................................. 2318
sh03216 4983 ACTTGGCCTGCTGTGCAGTGGGCCTTCTGTTCAACTTACCCTCCACCGCT 5032
5501 ----+----*----+----*----+----*----+----*----+----* 5550
msj07247 2318 .................................................. 2318
sh03216 5033 GACCCTGTGTGAAGAGAGATGGTGCGTTACTGCCATCTAATGGGAAAAGA 5082
5551 ----+----*----+----*----+----*----+----*----+----* 5600
msj07247 2318 .................................................. 2318
sh03216 5083 GAAAACTGCAGTTGGGAAAAGCAGCTGTGCATTTAAGGGTAGGGCTTTCT 5132
5601 ----+----*----+----*----+----*----+----*----+----* 5650
msj07247 2318 .................................................. 2318
sh03216 5133 GAAGGATTTCTGATACAGTCCAGAAAAGGGAAAATGATGACACAGCAGTT 5182
5651 ----+----*----+----*----+----*----+----*----+----* 5700
msj07247 2318 .................................................. 2318
sh03216 5183 GCCATCTTGAAAAATGCCCTTTCCTGCGGAAAGGGTGTTTTGAAGTCTAA 5232
5701 ----+----*----+----*----+----*----+----*----+----* 5750
msj07247 2318 .................................................. 2318
sh03216 5233 TACAACTATCATCACAAGGTCCCTGGACTAAGGCTGGATCGTGTAATTTA 5282
5751 ----+----*----+----*----+----*----+----*----+----* 5800
msj07247 2318 .................................................. 2318
sh03216 5283 GAATCTCAAATTGTATTTTAATTAATATGCTGGCAACAGAATCATTGAAA 5332
5801 ----+----*----+----*----+----*----+----*----+----* 5850
msj07247 2318 .................................................. 2318
sh03216 5333 CAGGCATCTCATTTTGTCAAGTTCTTAGCCGTTCAGTTTGTCAGGGGCTT 5382
5851 ----+----*----+----*----+----*----+----*----+----* 5900
msj07247 2318 .................................................. 2318
sh03216 5383 TAATATTTTAGATATCAACTAATACATAGTTTCAACTTTTAAAAATGTTT 5432
5901 ----+----*----+----*----+----*----+----*----+----* 5950
msj07247 2318 ................................TGTGCCTTA......... 2326
||||||||
sh03216 5433 GAAGATTGTATGTAATATAGGTGCCTATCTATAGTGCCTTAGTAATTTAA 5482
5951 ----+----*----+----*----+----*----+----*----+----* 6000
msj07247 2327 ..CAGAAACATTTTGAACAAT............................. 2345
|||||| ||||| | ||
sh03216 5483 ATCAGAAATATTTTATAAAACTTCTGGTTGTTTTGCAGTAGCCAATATAG 5532
6001 ----+----*----+----*----+----*----+----*----+----* 6050
msj07247 2346 .................................................. 2346
sh03216 5533 GCTTCATGCCCTCCTGAAGATAGTTTCCTCTGAAATGTAACTTTAAATAA 5582
6051 ----+----*--- 6063
msj07247 2346 ............. 2346
sh03216 5583 ACATTATTCCAAG 5595