FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1836.ptfa, 702 aa
 vs ./tmplib.26680 library

1768315 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 8.8567+/-0.00691; mu= -1.6996+/- 0.460
 mean_var=258.8577+/-60.844, 0's: 0 Z-trim: 1  B-trim: 8 in 1/35
 Lambda= 0.0797

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1855  ( 397 res)   mtj01864                   ( 397)  205   37  0.0058


>>mKIAA1855  ( 397 res)   mtj01864                        (397 aa)
 initn: 101 init1:  53 opt: 205  Z-score: 145.5  bits: 36.6 E(): 0.0058
Smith-Waterman score: 212;  24.205% identity (28.696% ungapped) in 409 aa overlap (4-399:29-386)

                                        10        20        30     
mKIAA1                          AACQQAVPAAAQAGGPRGLQALLEERIRNYREAAA
                                   : . :   ..::  ::..: :  : .  :.: 
mKIAA1 VTSPFTKVERTFVHIAEKSHLNVMSSGGQASRPEELSTGGELGLEVLSEGGIAE--EGAP
               10        20        30        40        50          

          40        50        60        70          80        90   
mKIAA1 SAKEAGEAAKARRCERGLKTLQSQLATVRKGGKICEDEIP--PPVALGKRPPAPQERAIK
       .  : : :  .    . ...   .    .  ...  : .:  : .: :  : . :: . :
mKIAA1 APLENGMALAGLDGTE-MESCALSGPPGETPSEVVTDSLPNGPALADGPAPASQQEPVTK
       60        70         80        90       100       110       

           100       110       120       130       140          150
mKIAA1 NPEIDSPGPCAMEPGNLSQPESSLPAIAPLPDSDPDPQALLLARQREYKAA--ALD-AKR
       .    ::.  :: ::  :.:.: .:..    :.  .:.. : :..:  : :    : :. 
mKIAA1 KGTTISPSRHAM-PG--SRPRSRIPVLLSEEDTGSEPSGSLSAKERWSKRARPQQDLARL
       120        130         140       150       160       170    

              160       170       180            190        200    
mKIAA1 AGDLDRARELMRIGKRFGTVLEALEKGQPVDLSGM-----PPAPADLKALP-QASKASSA
       . .  ..: :.:...  ..     ..     :::       ::     ::: .: .:...
mKIAA1 VMEKRQGRLLLRLASGASSSSSEEQRRASETLSGTGSEEDTPASEPTTALPRKAVRAATT
          180       190       200       210       220       230    

          210       220       230       240       250       260    
mKIAA1 TQGLSPAVEQMQPVMASDLPATPVAPAEPTTVLDALQQRLNKYREAGIQARANGDERKAR
        . .   .   .:: ...::. : . :  : .  :. .::.  . .:.   :  : :   
mKIAA1 RSRIPRPISVSMPVEGQQLPGRPHGAASATDL--AITSRLQLQKPSGLAPAA--DLRPK-
          240       250       260         270       280            

          270       280        290       300       310       320   
mKIAA1 MHDRIAKQYQDAVRAHQAGQ-KVDFAELPVPPGFPPIPGLEPRKGSEQDSVAATLATAQK
                :.: :.   :. .:.    :  ::.:   . .: .:: .         .:.
mKIAA1 ---------QSASRGPGPGRAQVSKPAAPRSPGLPASTARHP-SGSPR---------SQS
              290       300       310       320                 330

           330       340        350       360       370       380  
mKIAA1 LASEDAALVDDDEESDTPA-QAPLAKKPAQTLVSPSHLLTEPKASSSKESLSPSVREQVT
       :. .         ::..:. ::  .  :.. ..   .. ..:.::    . .:       
mKIAA1 LSRK---------ESSSPSHQARPGVPPSRGVL---QVRSQPEASPVAPKKGP-------
                       340       350          360       370        

            390       400       410       420       430       440  
mKIAA1 LLEARKLQYQRAALQAKRRQDLEQAKSHLRVAKSLEAQIIQARAGQPIDLSKVPSPLTDE
         ....:: :::: ...                                           
mKIAA1 --KGKQLQTQRAATKGRAVVSEGRPGAR                                
               380       390                                       




702 residues in 1 query   sequences
1768315 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:54:06 2006 done: Mon Mar 27 10:54:07 2006
 Scan time:  0.870 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]