# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/msj06319.fasta.nr -Q ../query/mKIAA0831.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0831, 186 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921249 sequences Expectation_n fit: rho(ln(x))= 5.4899+/-0.000185; mu= 6.1334+/- 0.010 mean_var=70.0765+/-13.593, 0's: 36 Z-trim: 37 B-trim: 53 in 1/65 Lambda= 0.153210 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|34980854|gb|AAH57360.1| D14Ertd436e protein [Mu ( 408) 1233 280.9 1.6e-73 gi|149033562|gb|EDL88360.1| similar to DNA segment ( 492) 1213 276.6 4.1e-72 gi|73963930|ref|XP_547826.2| PREDICTED: similar to ( 492) 1165 265.9 6.4e-69 gi|114653160|ref|XP_001162169.1| PREDICTED: hypoth ( 492) 1163 265.5 8.6e-69 gi|109083715|ref|XP_001088634.1| PREDICTED: simila ( 492) 1163 265.5 8.6e-69 gi|194034478|ref|XP_001925025.1| PREDICTED: simila ( 492) 1162 265.3 1e-68 gi|119902676|ref|XP_583052.3| PREDICTED: similar t ( 492) 1162 265.3 1e-68 gi|194225029|ref|XP_001914895.1| PREDICTED: simila ( 492) 1157 264.2 2.2e-68 gi|19264095|gb|AAH25038.1| D14Ertd436e protein [Mu ( 165) 1102 251.8 3.9e-65 gi|126282463|ref|XP_001368920.1| PREDICTED: hypoth ( 493) 1092 249.8 4.6e-64 gi|118092319|ref|XP_426476.2| PREDICTED: hypotheti ( 492) 1039 238.1 1.5e-60 gi|224051926|ref|XP_002200434.1| PREDICTED: hypoth ( 491) 1035 237.2 2.8e-60 gi|183986010|gb|AAI66401.1| LOC100158656 protein [ ( 495) 981 225.3 1.1e-56 gi|66910393|gb|AAH97026.1| Zgc:113944 [Danio rerio ( 517) 889 204.9 1.5e-50 gi|47214811|emb|CAF89638.1| unnamed protein produc ( 541) 885 204.1 2.9e-50 gi|224052088|ref|XP_002189619.1| PREDICTED: hypoth ( 254) 446 106.9 2.5e-21 gi|110756477|ref|XP_396142.3| PREDICTED: similar t ( 465) 435 104.6 2.3e-20 gi|47196173|emb|CAF87919.1| unnamed protein produc ( 278) 394 95.4 7.9e-18 gi|210117982|gb|EEA65716.1| hypothetical protein B ( 516) 385 93.5 5.3e-17 gi|167882330|gb|EDS45713.1| conserved hypothetical ( 497) 371 90.4 4.3e-16 gi|157013115|gb|EAA00293.4| AGAP012246-PA [Anophel ( 509) 335 82.5 1.1e-13 gi|212517485|gb|EEB19373.1| conserved hypothetical ( 677) 328 81.0 4.1e-13 gi|115638508|ref|XP_786269.2| PREDICTED: hypotheti ( 437) 317 78.5 1.5e-12 gi|156215599|gb|EDO36555.1| predicted protein [Nem ( 471) 309 76.7 5.5e-12 gi|108883570|gb|EAT47795.1| conserved hypothetical ( 501) 300 74.8 2.3e-11 gi|190580222|gb|EDV20307.1| hypothetical protein T ( 483) 299 74.5 2.6e-11 gi|215491181|gb|EEC00822.1| conserved hypothetical ( 307) 283 70.9 2.1e-10 gi|45709115|gb|AAH67650.1| Zgc:113944 protein [Dan ( 405) 284 71.2 2.3e-10 gi|198426689|ref|XP_002129835.1| PREDICTED: simila ( 512) 278 69.9 6.9e-10 gi|194184731|gb|EDW98342.1| GE23834 [Drosophila ya ( 503) 276 69.4 9.2e-10 gi|54638028|gb|EAL27430.1| GA11253 [Drosophila pse ( 496) 275 69.2 1.1e-09 gi|194101978|gb|EDW24021.1| GL23910 [Drosophila pe ( 496) 275 69.2 1.1e-09 gi|7301744|gb|AAF56856.1| CG11877 [Drosophila mela ( 503) 275 69.2 1.1e-09 gi|194131273|gb|EDW53316.1| GM12766 [Drosophila se ( 483) 274 69.0 1.2e-09 gi|190656032|gb|EDV53264.1| GG11644 [Drosophila er ( 503) 274 69.0 1.3e-09 gi|194201228|gb|EDX14804.1| GD21414 [Drosophila si ( 503) 274 69.0 1.3e-09 gi|194166221|gb|EDW81122.1| GK11889 [Drosophila wi ( 506) 271 68.3 2e-09 gi|193652793|ref|XP_001945788.1| PREDICTED: simila ( 258) 267 67.3 2.1e-09 gi|190614908|gb|EDV30432.1| GF23288 [Drosophila an ( 506) 268 67.7 3.2e-09 gi|194151840|gb|EDW67274.1| GJ24065 [Drosophila vi ( 496) 266 67.2 4.2e-09 gi|193895586|gb|EDV94452.1| GH19651 [Drosophila gr ( 509) 265 67.0 5e-09 gi|193917499|gb|EDW16366.1| GI22272 [Drosophila mo ( 498) 260 65.9 1.1e-08 >>gi|34980854|gb|AAH57360.1| D14Ertd436e protein [Mus mu (408 aa) initn: 1233 init1: 1233 opt: 1233 Z-score: 1476.2 bits: 280.9 E(): 1.6e-73 Smith-Waterman score: 1233; 100.000% identity (100.000% similar) in 186 aa overlap (1-186:223-408) 10 20 30 mKIAA0 LGYATQLVNIVSHILDINLPKKLCNSEFCG :::::::::::::::::::::::::::::: gi|349 SAYYNWVEEKKTTQGPDMEHNNPAYTISAALGYATQLVNIVSHILDINLPKKLCNSEFCG 200 210 220 230 240 250 40 50 60 70 80 90 mKIAA0 ENLSKQKLTRAVRKLNANILYLCSSQHVNLDQLQPLHTLRNLMHLVSPRSEHLGRSGPFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|349 ENLSKQKLTRAVRKLNANILYLCSSQHVNLDQLQPLHTLRNLMHLVSPRSEHLGRSGPFE 260 270 280 290 300 310 100 110 120 130 140 150 mKIAA0 VRADLEESMEFVDPGVAGESDASGDERVSDEETDLGTDWENLPSPRFCDIPSQPVEVSQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|349 VRADLEESMEFVDPGVAGESDASGDERVSDEETDLGTDWENLPSPRFCDIPSQPVEVSQS 320 330 340 350 360 370 160 170 180 mKIAA0 QSTQVSPPIASSSAGGMISSAAASVTSWFKAYTGHR :::::::::::::::::::::::::::::::::::: gi|349 QSTQVSPPIASSSAGGMISSAAASVTSWFKAYTGHR 380 390 400 >>gi|149033562|gb|EDL88360.1| similar to DNA segment, Ch (492 aa) initn: 1213 init1: 1213 opt: 1213 Z-score: 1451.0 bits: 276.6 E(): 4.1e-72 Smith-Waterman score: 1213; 97.849% identity (100.000% similar) in 186 aa overlap (1-186:307-492) 10 20 30 mKIAA0 LGYATQLVNIVSHILDINLPKKLCNSEFCG :::::::::::::::::::::::::::::: gi|149 SAYYNWVEEKKTTQGPDMEHNNPAYTISAALGYATQLVNIVSHILDINLPKKLCNSEFCG 280 290 300 310 320 330 40 50 60 70 80 90 mKIAA0 ENLSKQKLTRAVRKLNANILYLCSSQHVNLDQLQPLHTLRNLMHLVSPRSEHLGRSGPFE ::::::.:::::::::::::::::::::::::::::::::::::::::.::::::::::: gi|149 ENLSKQRLTRAVRKLNANILYLCSSQHVNLDQLQPLHTLRNLMHLVSPHSEHLGRSGPFE 340 350 360 370 380 390 100 110 120 130 140 150 mKIAA0 VRADLEESMEFVDPGVAGESDASGDERVSDEETDLGTDWENLPSPRFCDIPSQPVEVSQS :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|149 VRADLEESMEFVDPGVAGESDVSGDERVSDEETDLGTDWENLPSPRFCDIPSQPVEVSQS 400 410 420 430 440 450 160 170 180 mKIAA0 QSTQVSPPIASSSAGGMISSAAASVTSWFKAYTGHR ::::.::::::::::::::::::::::::::::::: gi|149 QSTQASPPIASSSAGGMISSAAASVTSWFKAYTGHR 460 470 480 490 >>gi|73963930|ref|XP_547826.2| PREDICTED: similar to DNA (492 aa) initn: 1165 init1: 1165 opt: 1165 Z-score: 1393.7 bits: 265.9 E(): 6.4e-69 Smith-Waterman score: 1165; 94.086% identity (97.312% similar) in 186 aa overlap (1-186:307-492) 10 20 30 mKIAA0 LGYATQLVNIVSHILDINLPKKLCNSEFCG : ::::::::.::::::::::::::::::: gi|739 SAYYNWVEEKKTTQGPDMEHSNPAYTISAALCYATQLVNILSHILDINLPKKLCNSEFCG 280 290 300 310 320 330 40 50 60 70 80 90 mKIAA0 ENLSKQKLTRAVRKLNANILYLCSSQHVNLDQLQPLHTLRNLMHLVSPRSEHLGRSGPFE ::::.::.::::.:::::::::: :::::::::::::::::::.:::: ::::::::::: gi|739 ENLSRQKFTRAVKKLNANILYLCFSQHVNLDQLQPLHTLRNLMYLVSPNSEHLGRSGPFE 340 350 360 370 380 390 100 110 120 130 140 150 mKIAA0 VRADLEESMEFVDPGVAGESDASGDERVSDEETDLGTDWENLPSPRFCDIPSQPVEVSQS ::::::::::::::::::::: :::::::::::::::::::::::::::::::::: ::: gi|739 VRADLEESMEFVDPGVAGESDESGDERVSDEETDLGTDWENLPSPRFCDIPSQPVEGSQS 400 410 420 430 440 450 160 170 180 mKIAA0 QSTQVSPPIASSSAGGMISSAAASVTSWFKAYTGHR ::.::::::::::::::::::::::::::::::::: gi|739 QSSQVSPPIASSSAGGMISSAAASVTSWFKAYTGHR 460 470 480 490 >>gi|114653160|ref|XP_001162169.1| PREDICTED: hypothetic (492 aa) initn: 1163 init1: 1163 opt: 1163 Z-score: 1391.3 bits: 265.5 E(): 8.6e-69 Smith-Waterman score: 1163; 94.086% identity (97.312% similar) in 186 aa overlap (1-186:307-492) 10 20 30 mKIAA0 LGYATQLVNIVSHILDINLPKKLCNSEFCG : ::::::::.:::::.::::::::::::: gi|114 SAYYSWVEEKKTTQGPDMEQSNPAYTISAALCYATQLVNILSHILDVNLPKKLCNSEFCG 280 290 300 310 320 330 40 50 60 70 80 90 mKIAA0 ENLSKQKLTRAVRKLNANILYLCSSQHVNLDQLQPLHTLRNLMHLVSPRSEHLGRSGPFE :::::::.::::.:::::::::: :::::::::::::::::::.:::: ::::::::::: gi|114 ENLSKQKFTRAVKKLNANILYLCFSQHVNLDQLQPLHTLRNLMYLVSPSSEHLGRSGPFE 340 350 360 370 380 390 100 110 120 130 140 150 mKIAA0 VRADLEESMEFVDPGVAGESDASGDERVSDEETDLGTDWENLPSPRFCDIPSQPVEVSQS ::::::::::::::::::::: ::::::::::::::::::::::::::::::: :::::: gi|114 VRADLEESMEFVDPGVAGESDESGDERVSDEETDLGTDWENLPSPRFCDIPSQSVEVSQS 400 410 420 430 440 450 160 170 180 mKIAA0 QSTQVSPPIASSSAGGMISSAAASVTSWFKAYTGHR ::::.::::::::::::::::::::::::::::::: gi|114 QSTQASPPIASSSAGGMISSAAASVTSWFKAYTGHR 460 470 480 490 >>gi|109083715|ref|XP_001088634.1| PREDICTED: similar to (492 aa) initn: 1163 init1: 1163 opt: 1163 Z-score: 1391.3 bits: 265.5 E(): 8.6e-69 Smith-Waterman score: 1163; 94.086% identity (97.312% similar) in 186 aa overlap (1-186:307-492) 10 20 30 mKIAA0 LGYATQLVNIVSHILDINLPKKLCNSEFCG : ::::::::.:::::.::::::::::::: gi|109 SAYYSWVEEKKTTQGPDMEQSNPAYTISAALCYATQLVNILSHILDVNLPKKLCNSEFCG 280 290 300 310 320 330 40 50 60 70 80 90 mKIAA0 ENLSKQKLTRAVRKLNANILYLCSSQHVNLDQLQPLHTLRNLMHLVSPRSEHLGRSGPFE :::::::.::::.:::::::::: :::::::::::::::::::.:::: ::::::::::: gi|109 ENLSKQKFTRAVKKLNANILYLCFSQHVNLDQLQPLHTLRNLMYLVSPSSEHLGRSGPFE 340 350 360 370 380 390 100 110 120 130 140 150 mKIAA0 VRADLEESMEFVDPGVAGESDASGDERVSDEETDLGTDWENLPSPRFCDIPSQPVEVSQS ::::::::::::::::::::: ::::::::::::::::::::::::::::::: :::::: gi|109 VRADLEESMEFVDPGVAGESDESGDERVSDEETDLGTDWENLPSPRFCDIPSQSVEVSQS 400 410 420 430 440 450 160 170 180 mKIAA0 QSTQVSPPIASSSAGGMISSAAASVTSWFKAYTGHR ::::.::::::::::::::::::::::::::::::: gi|109 QSTQASPPIASSSAGGMISSAAASVTSWFKAYTGHR 460 470 480 490 >>gi|194034478|ref|XP_001925025.1| PREDICTED: similar to (492 aa) initn: 1162 init1: 1162 opt: 1162 Z-score: 1390.1 bits: 265.3 E(): 1e-68 Smith-Waterman score: 1162; 93.011% identity (97.849% similar) in 186 aa overlap (1-186:307-492) 10 20 30 mKIAA0 LGYATQLVNIVSHILDINLPKKLCNSEFCG : ::::::::.:::::.::::::::::::: gi|194 SAYYNWVEEKKTTQGPDMEHNNPAYTISAALCYATQLVNILSHILDVNLPKKLCNSEFCG 280 290 300 310 320 330 40 50 60 70 80 90 mKIAA0 ENLSKQKLTRAVRKLNANILYLCSSQHVNLDQLQPLHTLRNLMHLVSPRSEHLGRSGPFE ::::.::.::::.:::::::::: :::::::::::::::::::.:::: ::::::::::: gi|194 ENLSRQKFTRAVKKLNANILYLCFSQHVNLDQLQPLHTLRNLMYLVSPNSEHLGRSGPFE 340 350 360 370 380 390 100 110 120 130 140 150 mKIAA0 VRADLEESMEFVDPGVAGESDASGDERVSDEETDLGTDWENLPSPRFCDIPSQPVEVSQS ::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::: gi|194 VRADLEESMEFVDPGVAGESDESGDERVSDEETDLGTDWENLPSPRFCDIPSQPVEVSQS 400 410 420 430 440 450 160 170 180 mKIAA0 QSTQVSPPIASSSAGGMISSAAASVTSWFKAYTGHR .:.:.::::::::::::::::::::::::::::::: gi|194 RSSQASPPIASSSAGGMISSAAASVTSWFKAYTGHR 460 470 480 490 >>gi|119902676|ref|XP_583052.3| PREDICTED: similar to CG (492 aa) initn: 1162 init1: 1162 opt: 1162 Z-score: 1390.1 bits: 265.3 E(): 1e-68 Smith-Waterman score: 1162; 93.548% identity (97.849% similar) in 186 aa overlap (1-186:307-492) 10 20 30 mKIAA0 LGYATQLVNIVSHILDINLPKKLCNSEFCG : ::::::::.::::::::::::::::::: gi|119 SAYYNWVEEKKTTQGPDMEHNNPAYTISAALCYATQLVNILSHILDINLPKKLCNSEFCG 280 290 300 310 320 330 40 50 60 70 80 90 mKIAA0 ENLSKQKLTRAVRKLNANILYLCSSQHVNLDQLQPLHTLRNLMHLVSPRSEHLGRSGPFE ::::.::.::::.:::::::::: :::::::::::::::::::.:::: ::::::::::: gi|119 ENLSRQKFTRAVKKLNANILYLCFSQHVNLDQLQPLHTLRNLMYLVSPNSEHLGRSGPFE 340 350 360 370 380 390 100 110 120 130 140 150 mKIAA0 VRADLEESMEFVDPGVAGESDASGDERVSDEETDLGTDWENLPSPRFCDIPSQPVEVSQS ::::::::::::::::::::: ::::.::::::::::::::::::::::::::::::::: gi|119 VRADLEESMEFVDPGVAGESDESGDEHVSDEETDLGTDWENLPSPRFCDIPSQPVEVSQS 400 410 420 430 440 450 160 170 180 mKIAA0 QSTQVSPPIASSSAGGMISSAAASVTSWFKAYTGHR ::.:.::::::::::::::::::::::::::::::: gi|119 QSSQASPPIASSSAGGMISSAAASVTSWFKAYTGHR 460 470 480 490 >>gi|194225029|ref|XP_001914895.1| PREDICTED: similar to (492 aa) initn: 1157 init1: 1157 opt: 1157 Z-score: 1384.1 bits: 264.2 E(): 2.2e-68 Smith-Waterman score: 1157; 91.935% identity (97.849% similar) in 186 aa overlap (1-186:307-492) 10 20 30 mKIAA0 LGYATQLVNIVSHILDINLPKKLCNSEFCG : .:::::::.:::::.::::::::::::: gi|194 SAYYSWVEEKKTTQGPDMEHNNPAHTISAALCFATQLVNILSHILDVNLPKKLCNSEFCG 280 290 300 310 320 330 40 50 60 70 80 90 mKIAA0 ENLSKQKLTRAVRKLNANILYLCSSQHVNLDQLQPLHTLRNLMHLVSPRSEHLGRSGPFE ::::.::.::::.:::::::::: :::::::::::::::::::.:::: ::::::::::: gi|194 ENLSRQKFTRAVKKLNANILYLCFSQHVNLDQLQPLHTLRNLMYLVSPSSEHLGRSGPFE 340 350 360 370 380 390 100 110 120 130 140 150 mKIAA0 VRADLEESMEFVDPGVAGESDASGDERVSDEETDLGTDWENLPSPRFCDIPSQPVEVSQS ::::::::::::::::.:::: :::::.:::::::::::::::::::::::::::::::: gi|194 VRADLEESMEFVDPGVTGESDESGDERMSDEETDLGTDWENLPSPRFCDIPSQPVEVSQS 400 410 420 430 440 450 160 170 180 mKIAA0 QSTQVSPPIASSSAGGMISSAAASVTSWFKAYTGHR ::.::::::::::::::::::::::::::.:::::: gi|194 QSSQVSPPIASSSAGGMISSAAASVTSWFRAYTGHR 460 470 480 490 >>gi|19264095|gb|AAH25038.1| D14Ertd436e protein [Mus mu (165 aa) initn: 1102 init1: 1102 opt: 1102 Z-score: 1325.6 bits: 251.8 E(): 3.9e-65 Smith-Waterman score: 1102; 100.000% identity (100.000% similar) in 165 aa overlap (22-186:1-165) 10 20 30 40 50 60 mKIAA0 LGYATQLVNIVSHILDINLPKKLCNSEFCGENLSKQKLTRAVRKLNANILYLCSSQHVNL ::::::::::::::::::::::::::::::::::::::: gi|192 KLCNSEFCGENLSKQKLTRAVRKLNANILYLCSSQHVNL 10 20 30 70 80 90 100 110 120 mKIAA0 DQLQPLHTLRNLMHLVSPRSEHLGRSGPFEVRADLEESMEFVDPGVAGESDASGDERVSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|192 DQLQPLHTLRNLMHLVSPRSEHLGRSGPFEVRADLEESMEFVDPGVAGESDASGDERVSD 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA0 EETDLGTDWENLPSPRFCDIPSQPVEVSQSQSTQVSPPIASSSAGGMISSAAASVTSWFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|192 EETDLGTDWENLPSPRFCDIPSQPVEVSQSQSTQVSPPIASSSAGGMISSAAASVTSWFK 100 110 120 130 140 150 mKIAA0 AYTGHR :::::: gi|192 AYTGHR 160 >>gi|126282463|ref|XP_001368920.1| PREDICTED: hypothetic (493 aa) initn: 1092 init1: 1092 opt: 1092 Z-score: 1306.5 bits: 249.8 E(): 4.6e-64 Smith-Waterman score: 1092; 86.559% identity (95.699% similar) in 186 aa overlap (1-186:308-493) 10 20 30 mKIAA0 LGYATQLVNIVSHILDINLPKKLCNSEFCG : ::::::::.:::::.::::::::::::: gi|126 SAYYNWVEEKKTTQGPDMEHNNPAYTISAALCYATQLVNILSHILDVNLPKKLCNSEFCG 280 290 300 310 320 330 40 50 60 70 80 90 mKIAA0 ENLSKQKLTRAVRKLNANILYLCSSQHVNLDQLQPLHTLRNLMHLVSPRSEHLGRSGPFE ::::..:.::::.:::::::::: ::::::: :.:::::::::.:::: .:::::::::: gi|126 ENLSRRKFTRAVKKLNANILYLCFSQHVNLDLLHPLHTLRNLMYLVSPDTEHLGRSGPFE 340 350 360 370 380 390 100 110 120 130 140 150 mKIAA0 VRADLEESMEFVDPGVAGESDASGDERVSDEETDLGTDWENLPSPRFCDIPSQPVEVSQS : ::::.::::.::..:::.: :::::.::::::::::::::::::::::::::::: :: gi|126 VSADLEDSMEFLDPAAAGETDESGDERISDEETDLGTDWENLPSPRFCDIPSQPVEVLQS 400 410 420 430 440 450 160 170 180 mKIAA0 QSTQVSPPIASSSAGGMISSAAASVTSWFKAYTGHR .::::: :.::::::::::::::::::::::::::: gi|126 HSTQVSQPVASSSAGGMISSAAASVTSWFKAYTGHR 460 470 480 490 186 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Mon Mar 16 16:01:13 2009 done: Mon Mar 16 16:05:45 2009 Total Scan time: 652.220 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]