Comparison of KIAA cDNA sequences between mouse and human (KIAA0831)
<<Original sequence data>>
mouse mKIAA0831 (msj06319) length: 2493 bp, CDS: 1 - 561
human KIAA0831 (hj04502) length: 4943 bp, CDS: 496 - 1716
In this page, the longest coding region predicted by GeneMark
was assigned as CDS for each of mouse and human KIAA cDNAs.
They were colored in green. When the CDS positions were not identical
on the aligned sequences between mouse and human cDNAs, mouse cDNA
sequence was translated based on the human CDS information.
The amino acid sequence produced here may not be identical to the
protein sequence deduced (see Description).
<<Aligned sequence information>>
----------------------------------------------------------
region #match #mismatch %diff
----------------------------------------------------------
DNA
5'UTR: - - - -
CDS: 1156 - 1716 487 74 13.2
3'UTR: 1717 - 4999 1263 670 34.7
amino acid
CDS: 1156 - 1716 176 11 5.9
----------------------------------------------------------
<<Alignment>>
1 ----+----*----+----*----+----*----+----*----+----* 50
msj06319 1 .................................................. 1
hj04502 1 ATTGATAAGGGTCCGTGTCGACTTTGAGGTCAGGACAGAAATACTGAATG 50
51 ----+----*----+----*----+----*----+----*----+----* 100
msj06319 1 .................................................. 1
hj04502 51 ACTTTACACTTAGGAAAAAATAGCTAAATAATTAAGATGCAGGCTGTAGT 100
101 ----+----*----+----*----+----*----+----*----+----* 150
msj06319 1 .................................................. 1
hj04502 101 GTTCAAACCAATAGAGCAGGGAAAGGGAAATGTAGATACTTTATTAATTC 150
151 ----+----*----+----*----+----*----+----*----+----* 200
msj06319 1 .................................................. 1
hj04502 151 AGTGGAAGATAGGAAAGTTAGAAGCAAAGGAGGCTGGGCACAGTGGCTCA 200
201 ----+----*----+----*----+----*----+----*----+----* 250
msj06319 1 .................................................. 1
hj04502 201 TGCCTGTAATCCTAGCACTTTGGGAGGCCAAGACAGGTGGATCACCTGAG 250
251 ----+----*----+----*----+----*----+----*----+----* 300
msj06319 1 .................................................. 1
hj04502 251 GTTAGGGGTTTCACCATGTTGGCCAGGATGGTCTTGATCTCCTAACCTCT 300
301 ----+----*----+----*----+----*----+----*----+----* 350
msj06319 1 .................................................. 1
hj04502 301 TGATCTGCCCTCCTTGGCCTCCCAAAGTGCTGCGATTACAGGCGTGAGCC 350
351 ----+----*----+----*----+----*----+----*----+----* 400
msj06319 1 .................................................. 1
hj04502 351 ACCGCACTGGCCTAATTTCTCTTTTCTCTGCATTGAACTAGAAAAACATC 400
401 ----+----*----+----*----+----*----+----*----+----* 450
msj06319 1 .................................................. 1
hj04502 401 GTTCTCTTTTTCGTAATGTTCCATAGTTACAAAAGCTATAACATAAGGTC 450
451 ----+----*----+----*----+----*----+----*----+----* 500
msj06319 1 .................................................. 1
hj04502 451 TTTTTCTTCATTATGTTTTCTGACATATCTGAAAATAAGCAGTGATCCCA 500
S Q
501 ----+----*----+----*----+----*----+----*----+----* 550
msj06319 1 .................................................. 1
hj04502 501 GGTAGATAATCATATTAACCATAAGAGACCAACGTTTGTGATATTTATTA 550
V D N H I N H K R P T F V I F I T
551 ----+----*----+----*----+----*----+----*----+----* 600
msj06319 1 .................................................. 1
hj04502 551 CATGCTTTTTTCAGAGATGGAAAATAATGTCCTGCAAGATGAGGATTGAA 600
C F F Q R W K I M S C K M R I E
601 ----+----*----+----*----+----*----+----*----+----* 650
msj06319 1 .................................................. 1
hj04502 601 CAGTTAAAACAAACAATATGTAAAGGAAATGAAGAAATGGAGAAAAATTC 650
Q L K Q T I C K G N E E M E K N S
651 ----+----*----+----*----+----*----+----*----+----* 700
msj06319 1 .................................................. 1
hj04502 651 TGAAGGCCTTCTCAAAACCAAGGAAAAGAATCAGAAGCTTTACAGTCGAG 700
E G L L K T K E K N Q K L Y S R A
701 ----+----*----+----*----+----*----+----*----+----* 750
msj06319 1 .................................................. 1
hj04502 701 CACAACGGCACCAAGAGAAAAAGGAGAAGATTCAGAGGCATAATCGCAAA 750
Q R H Q E K K E K I Q R H N R K
751 ----+----*----+----*----+----*----+----*----+----* 800
msj06319 1 .................................................. 1
hj04502 751 CTTGGTGACCTGGTAGAAAAAAAGACCATTGACTTAAGAAGTCATTATGA 800
L G D L V E K K T I D L R S H Y E
801 ----+----*----+----*----+----*----+----*----+----* 850
msj06319 1 .................................................. 1
hj04502 801 GCGTCTGGCAAATCTTCGACGATCCCATATATTAGAGCTCACCTCTGTCA 850
R L A N L R R S H I L E L T S V I
851 ----+----*----+----*----+----*----+----*----+----* 900
msj06319 1 .................................................. 1
hj04502 851 TTTTTCCAATCGAGGAAGTAAAGACGGGTGTGAGAGACCCCGCAGATGTG 900
F P I E E V K T G V R D P A D V
901 ----+----*----+----*----+----*----+----*----+----* 950
msj06319 1 .................................................. 1
hj04502 901 TCTTCAGAGAGTGACAGTGCCATGACCTCCAGCACTGTGAGCAAGCTTGC 950
S S E S D S A M T S S T V S K L A
951 ----+----*----+----*----+----*----+----*----+----* 1000
msj06319 1 .................................................. 1
hj04502 951 TGAAGCCCGGAGGACAACTTACCTCTCAGGACGATGGGTCTGTGACGATC 1000
E A R R T T Y L S G R W V C D D H
1001 ----+----*----+----*----+----*----+----*----+----* 1050
msj06319 1 .................................................. 1
hj04502 1001 ACAACGGAGACACCAGCATTAGCATTACAGGGCCTTGGATTAGCCTCCCT 1050
N G D T S I S I T G P W I S L P
1051 ----+----*----+----*----+----*----+----*----+----* 1100
msj06319 1 .................................................. 1
hj04502 1051 AACAATGGGGACTACTCTGCCTACTACAGCTGGGTGGAGGAGAAGAAAAC 1100
N N G D Y S A Y Y S W V E E K K T
1101 ----+----*----+----*----+----*----+----*----+----* 1150
msj06319 1 .................................................. 1
hj04502 1101 AACCCAGGGGCCTGACATGGAGCAGAGTAACCCTGCCTACACCATCAGTG 1150
T Q G P D M E Q S N P A Y T I S A
1151 ----+----*----+----*----+----*----+----*----+----* 1200
L G Y A T Q L V N I V S H I L
msj06319 1 .....CTGGGCTACGCCACGCAGCTCGTCAACATTGTGTCTCACATACTT 45
||| |||| || || ||||| ||||||||| ||||||| ||||||
hj04502 1151 CTGCGCTGTGCTATGCAACTCAGCTGGTCAACATTCTGTCTCATATACTT 1200
A L C Y A T Q L V N I L S H I L
1201 ----+----*----+----*----+----*----+----*----+----* 1250
D I N L P K K L C N S E F C G E N
msj06319 46 GACATCAATCTTCCCAAAAAGCTGTGCAACAGCGAGTTCTGTGGCGAAAA 95
|| | ||||||||||||||||| |||||||| || || |||||||||||
hj04502 1201 GATGTAAATCTTCCCAAAAAGCTCTGCAACAGTGAATTTTGTGGCGAAAA 1250
D V N L P K K L C N S E F C G E N
1251 ----+----*----+----*----+----*----+----*----+----* 1300
L S K Q K L T R A V R K L N A N I
msj06319 96 CCTCAGCAAGCAGAAACTGACACGCGCAGTGAGGAAACTGAACGCAAACA 145
|| |||||||||||| | || || ||||||| ||||||||| ||||| |
hj04502 1251 TCTAAGCAAGCAGAAATTTACTCGAGCAGTGAAGAAACTGAATGCAAATA 1300
L S K Q K F T R A V K K L N A N I
1301 ----+----*----+----*----+----*----+----*----+----* 1350
L Y L C S S Q H V N L D Q L Q P
msj06319 146 TCCTTTACCTTTGTTCTTCTCAGCATGTAAATCTGGATCAGTTGCAGCCA 195
| ||||||||||||| |||||||||||||||| | ||||| || || |||
hj04502 1301 TTCTTTACCTTTGTTTTTCTCAGCATGTAAATTTAGATCAATTACAACCA 1350
L Y L C F S Q H V N L D Q L Q P
1351 ----+----*----+----*----+----*----+----*----+----* 1400
L H T L R N L M H L V S P R S E H
msj06319 196 CTGCACACACTCAGGAACCTGATGCACTTGGTCAGCCCGCGCTCTGAGCA 245
||||| || |||||||| || ||| || ||||||| || ||||||| ||
hj04502 1351 CTGCATACCCTCAGGAATCTAATGTACCTGGTCAGTCCAAGCTCTGAACA 1400
L H T L R N L M Y L V S P S S E H
1401 ----+----*----+----*----+----*----+----*----+----* 1450
L G R S G P F E V R A D L E E S M
msj06319 246 CCTAGGCAGGTCAGGACCCTTTGAAGTTCGAGCAGACCTCGAGGAGTCCA 295
||||||||||||||| ||||||||||| ||||||||||| ||||||||||
hj04502 1401 CCTAGGCAGGTCAGGGCCCTTTGAAGTACGAGCAGACCTTGAGGAGTCCA 1450
L G R S G P F E V R A D L E E S M
1451 ----+----*----+----*----+----*----+----*----+----* 1500
E F V D P G V A G E S D A S G D
msj06319 296 TGGAATTTGTGGACCCTGGAGTTGCTGGAGAATCAGACGCGAGTGGAGAT 345
||||||||||||| || |||||||||||||||||||| | ||| ||||||
hj04502 1451 TGGAATTTGTGGATCCCGGAGTTGCTGGAGAATCAGATGAGAGCGGAGAT 1500
E F V D P G V A G E S D E S G D
1501 ----+----*----+----*----+----*----+----*----+----* 1550
E R V S D E E T D L G T D W E N L
msj06319 346 GAGCGTGTAAGCGATGAGGAGACTGACCTGGGCACAGACTGGGAGAACCT 395
||||| || |||||||| || || |||||||||||||||||||||||| |
hj04502 1501 GAGCGCGTCAGCGATGAAGAAACCGACCTGGGCACAGACTGGGAGAACTT 1550
E R V S D E E T D L G T D W E N L
1551 ----+----*----+----*----+----*----+----*----+----* 1600
P S P R F C D I P S Q P V E V S Q
msj06319 396 GCCAAGCCCCCGATTCTGTGACATCCCTTCCCAGCCGGTGGAAGTGTCCC 445
||| || ||||| || ||||| |||||||||||| | |||||||| ||||
hj04502 1551 GCCTAGTCCCCGGTTTTGTGATATCCCTTCCCAGTCTGTGGAAGTCTCCC 1600
P S P R F C D I P S Q S V E V S Q
1601 ----+----*----+----*----+----*----+----*----+----* 1650
S Q S T Q V S P P I A S S S A G
msj06319 446 AGAGCCAGAGCACCCAGGTGTCCCCACCCATTGCCAGCAGCAGCGCTGGT 495
|||| ||||||||||||| |||||||||||| || |||||||| || |||
hj04502 1601 AGAGTCAGAGCACCCAGGCGTCCCCACCCATCGCGAGCAGCAGTGCAGGT 1650
S Q S T Q A S P P I A S S S A G
1651 ----+----*----+----*----+----*----+----*----+----* 1700
G M I S S A A A S V T S W F K A Y
msj06319 496 GGGATGATCTCCTCCGCTGCGGCCTCGGTGACCTCTTGGTTCAAAGCTTA 545
|||||||||||||| || || |||||||||||||| ||||| ||||||||
hj04502 1651 GGGATGATCTCCTCTGCAGCAGCCTCGGTGACCTCCTGGTTTAAAGCTTA 1700
G M I S S A A A S V T S W F K A Y
1701 ----+----*----+----*----+----*----+----*----+----* 1750
T G H R *
msj06319 546 CACTGGACACCGCTAACGAGTTGGGACCAAAA.ATGCTGATTTTGTGTC. 593
|||||||||||| ||||||| ||||||||| || | | | || ||
hj04502 1701 CACTGGACACCGTTAACGAGCATGGACCAAAACATACCAAATCTGCATCA 1750
T G H R *
1751 ----+----*----+----*----+----*----+----*----+----* 1800
msj06319 594 ..TCAGAGTCTTTCCCACTGCACTCTCAT.AACCTTGTCTGTGT.AGTTG 639
|| | ||||||| |||||| | ||| || ||||| | ||||
hj04502 1751 AGAAAGTTCTTCTCCCACTACACTCTAGTAAACATTTTCTGTTTAAGTTA 1800
1801 ----+----*----+----*----+----*----+----*----+----* 1850
msj06319 640 CGATAGAGCTTGGAA................................... 654
||||| | |||||
hj04502 1801 AGATAGTGTCTGGAACAAAGAGGTTAAAGTGTTGTTTTGTTTTGTCTTTT 1850
1851 ----+----*----+----*----+----*----+----*----+----* 1900
msj06319 655 .................................................. 655
hj04502 1851 TAAGCAGGGAGACAAACATTTCTATTTGCCAAGTGGCCTGTGATGGTGAC 1900
1901 ----+----*----+----*----+----*----+----*----+----* 1950
msj06319 655 .................................................. 655
hj04502 1901 CAACATGCTTATGATAATTAAGAGAACAGGGGTCGAAGGTCTTTCTACCC 1950
1951 ----+----*----+----*----+----*----+----*----+----* 2000
msj06319 655 ........GCTATCGCCAGGACAAGATTAGTGTCAGGGC........... 685
||| | |||| | | | || || |
hj04502 1951 AGACCAGTGCTGGTGGAAGGAGGACCTGTGCGTGTGGCCAGTTCTGCCAA 2000
2001 ----+----*----+----*----+----*----+----*----+----* 2050
msj06319 686 ........................CTGAGCTCGGGGCTCCTGGGCCCAGG 711
||| || |||| | || || || |
hj04502 2001 GGAAGCAGTTGATTTGGGTTCCCTCTGGGCCCGGGCCACCGGGCCCACAG 2050
2051 ----+----*----+----*----+----*----+----*----+----* 2100
msj06319 712 ....TCCTCAGTATGCTGGTTCCTG.GGTGC..AGAGTCTCCCTGACAC. 753
||||| ||||||| | || ||||| ||| | | ||||||||
hj04502 2051 ATATGGGTCAGTGTGCTGGTCCTTGCGGTGCTGAGACTGTTCCTGACACT 2100
2101 ----+----*----+----*----+----*----+----*----+----* 2150
msj06319 754 .TAAGTCCTAGGCTTTGATCAGATCACAAAGAAGTGTTTCTTGGTAATGA 802
||||| ||| ||| | ||||| |||| ||| |||||| | || |
hj04502 2101 TTAAGTTTTAGAGGTTGGTTGAATCAC.AAGAGGTGATTCTTGATTATTA 2149
2151 ----+----*----+----*----+----*----+----*----+----* 2200
msj06319 803 GGA.ATGAAAGACAAAGGCTGAGT.....TTGTTTTTCTGTCATCCTCTT 846
||| |||||||| ||| ||| | ||||||||| ||| | ||
hj04502 2150 GGACATGAAAGATAAAAGCTCTTTAATAAGAGTTTTTCTGCCATTGTTTT 2199
2201 ----+----*----+----*----+----*----+----*----+----* 2250
msj06319 847 GAG.AGACCAGCCAGCAGGCCAGCAGCAGTTTGGCCTCATCCGGGAGAGG 895
| | | ||||||||| | | ||| || || ||
hj04502 2200 TTGTATGAGAACCAGCAGGCAATTTAAAATTT...CTAATTTGGTCCTTT 2246
2251 ----+----*----+----*----+----*----+----*----+----* 2300
msj06319 896 TGGTTGTCTGGGGAAGGAGGAAATGAAAGCTTATTGCT.......GTCAG 938
|| | |||| || || | | | | || | || |
hj04502 2247 GATTTTGTTTGGGAGGGGTGAGTTACACGTATTTTATTCATGCTGCTCTG 2296
2301 ----+----*----+----*----+----*----+----*----+----* 2350
msj06319 939 TCATTGTGCGTC..ACATTCCTGATTTCCT....ACTACACACCAAAGAA 982
|| | || ||| ||||||||| ||| || | |||||||||||||
hj04502 2297 TCGTAGTTTGTCAGACATTCCTGTTTTTCTTTCCCCCACACACCAAAGAA 2346
2351 ----+----*----+----*----+----*----+----*----+----* 2400
msj06319 983 ACCAAATTCTTTATTTCTGTAGACCCATATCTGCGAATGGGGAGTCTGCT 1032
| || || || | |||||| ||| ||||| | ||
hj04502 2347 AATGAAAGTCTTTTTCTTTAGGACCCACATCCATAAATGGAAGAAATCCT 2396
2401 ----+----*----+----*----+----*----+----*----+----* 2450
msj06319 1033 GG.........GATGGTTAGATGTCTAAACAGTTCTCTTGTATTCTGAAG 1073
|| | ||| | | ||| || ||||||||||||| |
hj04502 2397 GGCTGCAATAATGTCTAGAGAGTTTTTAACTATTTTCTTGTATTCTGAGG 2446
2451 ----+----*----+----*----+----*----+----*----+----* 2500
msj06319 1074 GGAGATAA.......................................... 1081
||| |||
hj04502 2447 GGAATTAAGCTTATTCTTACCTAGTTGAATTCCTGCCATCCACACTATGA 2496
2501 ----+----*----+----*----+----*----+----*----+----* 2550
msj06319 1082 .......GTCATTGGAATTGTCTGTACTACACTCACTTCCTCCATCA... 1121
| |||| | || | | | || | | ||| |
hj04502 2497 GCATTTTGAAATTGAACTTATATTTTCTGGGTGAAAATAAGTCATGAAGG 2546
2551 ----+----*----+----*----+----*----+----*----+----* 2600
msj06319 1122 ....TTCCCTGGATGGGCTAAATGCTACCCGAGCGTTGGCTGAACACTTA 1167
| || | | ||| ||||| || | | ||| | |
hj04502 2547 TCATTCCCTTATGTAAGCTCAATGCCTGCCTGGGCACAGGGGAAAAGCCA 2596
2601 ----+----*----+----*----+----*----+----*----+----* 2650
msj06319 1168 ...............TGTGGTCACTCGCTTGCTGTCCGGTTTCTTCCTTG 1202
| |||||| || || ||||| |||||| ||
hj04502 2597 CTTAGTTAAGTGGCCTCTGGTCATTCTTGTGGTGTCCACTTTCTTTCTAT 2646
2651 ----+----*----+----*----+----*----+----*----+----* 2700
msj06319 1203 GTGGTGGTGGTGGGGTTAACTAGTAGCAGGTGTTTCCA.GGGAACTCTTC 1251
| | | | | | || |||||||||| || ||||| | ||
hj04502 2647 GGGATTGAGTAG..........GTGGCAGGTGTTTTCAGGGGAAACCATC 2686
2701 ----+----*----+----*----+----*----+----*----+----* 2750
msj06319 1252 CTTCTTGTT..CCTGAGGTCTTCTTGTCCCTGGGGTCTCTG......... 1290
|| |||||| || || |||| | | ||| || | | |
hj04502 2687 CTACTTGTTTCCCCGAACTCTTTGTTGCTCTGAGGACACAGCTTTGCTCA 2736
2751 ----+----*----+----*----+----*----+----*----+----* 2800
msj06319 1291 ..........................................AGACTGAA 1298
|||
hj04502 2737 GAAATGCAGCGCAGATCCTTACGGCTGATGCTACTCTGCTCTGTTCTGGG 2786
2801 ----+----*----+----*----+----*----+----*----+----* 2850
msj06319 1299 GACAGCACCTTATGCAGAGTGTAGCGCGGAGCAGCTGTCCCAGGAAATGC 1348
|| ||||| ||| ||| | | | ||| | | ||
hj04502 2787 GAAAGCACAATATAAAGAAAGAATTTCCCAGCCGGGCGCGGTGGCTCACG 2836
2851 ----+----*----+----*----+----*----+----*----+----* 2900
msj06319 1349 TCAGCTATCAAGGGATTT................................ 1366
| | ||| || | ||
hj04502 2837 CCTGTAATCCCGGCACTTTGGGAGGCCGAGGCAGGCGGATCACTTGAGGT 2886
2901 ----+----*----+----*----+----*----+----*----+----* 2950
msj06319 1367 .................................................. 1367
hj04502 2887 CAGGAGTTTGAGAGCAGCCTGGCTAACATGGTGAAACCCTGTTTCTGCTA 2936
2951 ----+----*----+----*----+----*----+----*----+----* 3000
msj06319 1367 .................................................. 1367
hj04502 2937 GAAGTGCAGAAAATTACCGGGTGTGGTGGCGCACGCCTGTAATCCCAGCT 2986
3001 ----+----*----+----*----+----*----+----*----+----* 3050
msj06319 1367 .................................................. 1367
hj04502 2987 ACTCGGGAGGCTGCGGCGGGAGAATCGCTTGAACCGGGAGGCGGAGGTTG 3036
3051 ----+----*----+----*----+----*----+----*----+----* 3100
msj06319 1367 .................................................. 1367
hj04502 3037 CAGTGAGCCGAGATTGTGCCATTGCACTCCAGCCTGGGCAACAAGAGCGA 3086
3101 ----+----*----+----*----+----*----+----*----+----* 3150
msj06319 1367 .................................................. 1367
hj04502 3087 GGCTCCGTCTCAAAAAAAAAAAGAATTTCCCTCAGCAGGAGATCATTTTC 3136
3151 ----+----*----+----*----+----*----+----*----+----* 3200
msj06319 1367 ......CCTCAGAGGTCATTC...TAATGACAATCTTA.TAGAAAGCTAT 1406
| | ||||||| || ||||||||||| ||||| ||||
hj04502 3137 AGCTCACGTGTCTTGTCATTCTTTTAGTGACAATCTTACAAGAAAACTAT 3186
3201 ----+----*----+----*----+----*----+----*----+----* 3250
msj06319 1407 AAAAAGAGAGGCATTATGTTCAAGTCATAAGGAGTTCTTTTTTTATTTTT 1456
|| ||||||||||||||| || || || | |||||||||
hj04502 3187 AATGAGAGAGGCATTATGTACA......AATATGTAAGTAGTTTATTTTT 3230
3251 ----+----*----+----*----+----*----+----*----+----* 3300
msj06319 1457 AGTAACTTCAAAAAGGAAGTTCTGTGTAACAGACTCCTGCAGTCCTGTGA 1506
| ||||| |||||| | ||| | | | |||| |||
hj04502 3231 AATAACTGCAAAAATATCCTATGTAACAACTACCAAAAGAAATCCTATGA 3280
3301 ----+----*----+----*----+----*----+----*----+----* 3350
msj06319 1507 GAAAGCACCCCCCTCCCCTGGCCTTGTCACCATATCCTCCTGTTGTGACT 1556
| || | | ||| || | ||||||| || ||||| |
hj04502 3281 AAGAG......TCCTAACAGGCATTATTACCATAT....CTTATGTGATT 3320
3351 ----+----*----+----*----+----*----+----*----+----* 3400
msj06319 1557 GGTGTGATGGTACCTCAGCCAGGTCCTTCAGCAGCCTGCCACGCCCTGGC 1606
|| |||| | ||||| | | || ||||| | ||||| |||| ||
hj04502 3321 GGCATGATAGCACCTCTGATAAATCATTCAGAGGTTTGCCATGCCCCAGC 3370
3401 ----+----*----+----*----+----*----+----*----+----* 3450
msj06319 1607 TTCTGT.....TGACTCACACTGTGGTTGGTACTTTGCCTGC.AGATTGA 1650
|||| | | | | ||| |||| |||||||||| | || ||
hj04502 3371 TTCTTTTCTCATCATAATAATTGTAGTTGATACTTTGCCTCCAAGTCCGA 3420
3451 ----+----*----+----*----+----*----+----*----+----* 3500
msj06319 1651 GGTGCTGTGGCGCTTTGGC.........................AGTTAT 1675
|||||| | ||||| || |||| |
hj04502 3421 GGTGCTATATAGCTTTTGCTAATGGTATATTTGGTGTTTTGTATAGTTTT 3470
3501 ----+----*----+----*----+----*----+----*----+----* 3550
msj06319 1676 ...TAGAAGTGTAGGAAGGACTTCA.TCCTGCCCAGGTTCCCCATGTTCC 1721
|||| || || | ||| || | | || || | | || ||||
hj04502 3471 GGGTAGAGTTGCAGAACGGAGTTTATTTCTATCCGGTAGTCACAAATTCC 3520
3551 ----+----*----+----*----+----*----+----*----+----* 3600
msj06319 1722 CAAGCTCTAGATACCCAGCTGTGGAGCAGG.................... 1751
|||||| | | || |||
hj04502 3521 TTGGCTCTATGAATTTTCCATGAAAGGAGGAAGTAGGCTTTTCTCGTTGT 3570
3601 ----+----*----+----*----+----*----+----*----+----* 3650
msj06319 1752 ..............................................CGGC 1755
|||
hj04502 3571 GGGTGGTCTTTTTTTTTTTTGGAGACGGAGTCTCGCTCAGCTGCCCAGGC 3620
3651 ----+----*----+----*----+----*----+----*----+----* 3700
msj06319 1756 TGGAGTCTG......................................... 1764
|||||| ||
hj04502 3621 TGGAGTGTGGTGGCGCCATCTCCGCTCGCTGCAACCACCATCTCCTGGGT 3670
3701 ----+----*----+----*----+----*----+----*----+----* 3750
msj06319 1765 .................................................. 1765
hj04502 3671 TCAGGCGATTCTTCCGTCTCAGCCTCCCGAGTAGCTGGGATTATAGGCAC 3720
3751 ----+----*----+----*----+----*----+----*----+----* 3800
msj06319 1765 .................................................. 1765
hj04502 3721 CTGCCATCATGCCCAGCTAATTTTTGTATTTTGGTAGAGACGGGGGTTTT 3770
3801 ----+----*----+----*----+----*----+----*----+----* 3850
msj06319 1765 .................................................. 1765
hj04502 3771 CACCATGTTGGCCAGGCTGGTCTTGAACTCCTGGCTTCGGGTGATCCGCT 3820
3851 ----+----*----+----*----+----*----+----*----+----* 3900
msj06319 1765 .................................................. 1765
hj04502 3821 TGCCTTGGCCTCCTAGGGTGCTGGGATTGCAGGCCTGAGCCACCGCGCCC 3870
3901 ----+----*----+----*----+----*----+----*----+----* 3950
msj06319 1765 ........................................TTCTGTGCTC 1774
|| ||||||
hj04502 3871 GGCCCCTTATGGGTTCTTCTACACTGCTGGGATCTCTGTTTTAAGTGCTC 3920
3951 ----+----*----+----*----+----*----+----*----+----* 4000
msj06319 1775 AGC....TCTGCGACTGCTGGGCTCGTGTTTTACCACCTACTTCT..AGG 1818
||| | || ||||||||| |||| ||| | | |||| ||
hj04502 3921 AGCTTCATGATTGATTGCTGGGCTTCCATTTTCCCATCCAGTTCTGGAGT 3970
4001 ----+----*----+----*----+----*----+----*----+----* 4050
msj06319 1819 ACTTACAGACTGAGTGCGCT.............................. 1838
| || ||| ||| | |
hj04502 3971 TCGTAGAGAGTGAAGATGGTAGACTTGAACAGATAAATAAACTTAACGAT 4020
4051 ----+----*----+----*----+----*----+----*----+----* 4100
msj06319 1839 .................................................. 1839
hj04502 4021 CTTGTAAGAGTTGTCTAGCTACTTAAAACCCTCAGAAGTAAGAGCTTAGT 4070
4101 ----+----*----+----*----+----*----+----*----+----* 4150
msj06319 1839 .................................................. 1839
hj04502 4071 CTCACGAGTTGTAAGAGTGGGATTTGGAGCTTGGTGGTGGAGACTGACTT 4120
4151 ----+----*----+----*----+----*----+----*----+----* 4200
msj06319 1839 .................................................. 1839
hj04502 4121 CAGCTGAGAGATGCACAACAGTCATGGTTTTCTTAAGCCTCTTATGAAAC 4170
4201 ----+----*----+----*----+----*----+----*----+----* 4250
msj06319 1839 .........GGGAGGAAGCTACAGAA...AGTGCAGAGGCCACCAACTAC 1876
| || ||||||| |||| | | ||||| ||| ||||
hj04502 4171 CATGAATGAGAGATGAAGCTAAAGAATAGAATCCAGAGATCACAAACT.. 4218
4251 ----+----*----+----*----+----*----+----*----+----* 4300
msj06319 1877 CGCCTACAGCAATTTAACCACATTTGCAGAAAGCACGGGGCTGGGCGG.. 1924
| ||| || | || || | |||| || | | || || ||
hj04502 4219 CATCTAGAGTACTTCCACAAAATTTACAAAGATGTGGGAACTTTATGGAT 4268
4301 ----+----*----+----*----+----*----+----*----+----* 4350
msj06319 1925 ............CCTTGTTTTATTTCATATCAATCAGAGGCACTTT.... 1958
||||| | || ||||||| |||||||||||
hj04502 4269 AGGATATATTTTGTTTGTTGTTGTTAATATCAACTAGAGGCACTTTACAT 4318
4351 ----+----*----+----*----+----*----+----*----+----* 4400
msj06319 1959 .......TGTCATCGTCCCTCACATTAAGTGACCAGCACGGAC.....TG 1996
|| |||| || | | || | ||| || |
hj04502 4319 AGGGTTAAGTGATCGAACC.CTTTTGTGGTTTTGAACACCAACATACTGG 4367
4401 ----+----*----+----*----+----*----+----*----+----* 4450
msj06319 1997 CCTAGGCTGCTCAAATCCTTGGGGTTTTGTTATTTTGCACTGGATCCACC 2046
| || ||||| |||| || |||||| |||||||||||||||||||||
hj04502 4368 CTTACACTGCTGAAATATTTTGGGTTTCATTATTTTGCACTGGATCCACC 4417
4451 ----+----*----+----*----+----*----+----*----+----* 4500
msj06319 2047 TGTTGTAAATAGTCTTAAATACACATTTCAACCACTGTTTGGTTCCTACA 2096
|||||||| |||||| || |||||||||||||||||| || ||||
hj04502 4418 ..CTGTAAATACTCTTAAGTATACATTTCAACCACTGTTT..TTTCTACT 4463
4501 ----+----*----+----*----+----*----+----*----+----* 4550
msj06319 2097 CTCTTTGCTGCTCATTAAAACTTTTTGTGTAGGTGTCAGAACCGTACACA 2146
|| ||||||||||||||||| ||| |||||||| ||||||| || |
hj04502 4464 CTTTTTGCTGCTCATTAAAATCTTTCATGTAGGTGCCAGAACCATATGTA 4513
4551 ----+----*----+----*----+----*----+----*----+----* 4600
msj06319 2147 AACAGCTTTCTAGAAAAAAAAAATGAAGCTGGTGTTTTGTTTTTTTTTTT 2196
||||||||| | |||||| |||||||||| ||||| |
hj04502 4514 AACAGCTTTTT.....AAAAAATTGAAGCTGGTATTTTG..........T 4548
4601 ----+----*----+----*----+----*----+----*----+----* 4650
msj06319 2197 TTAAACCGAAAGCCATAGAAGTTGATCATGTTTTCCATTTAAAAATGATT 2246
|||||| |||||||||||| ||| ||||||||||||||| |||||||||
hj04502 4549 TTAAACAAAAAGCCATAGAACTTGGTCATGTTTTCCATTTTAAAATGATT 4598
4651 ----+----*----+----*----+----*----+----*----+----* 4700
msj06319 2247 TCTTGGAACAAGGTAATACTAATAGACACTCAGAGGCACCACACGGGCTG 2296
| || ||||| |||||||||||| | || || |||||||| || |||||
hj04502 4599 TACTGAAACAAAGTAATACTAATAAAAACCCACAGGCACCAAACAGGCTG 4648
4701 ----+----*----+----*----+----*----+----*----+----* 4750
msj06319 2297 CTTTACATGGTCTTACGTAG..................AACCAAGAAATG 2328
||| | ||||||| || | |||||| |
hj04502 4649 CTTAAAATGGTCTGTTAAAGACATTTTTTGGTTATGGAATATAAGAAAAG 4698
4751 ----+----*----+----*----+----*----+----*----+----* 4800
msj06319 2329 TAACTTACCATGGTATGGGGG............TCAGCATTGGGTGGGGT 2366
| || ||| ||||| ||| |||||||| | ||
hj04502 4699 TTTTGCACATCTGTAAGGGGGAAAAACAGTATATCACCATTGGGTAGAGT 4748
4801 ----+----*----+----*----+----*----+----*----+----* 4850
msj06319 2367 TCAGGTGTGCATTGGGAAAGCTGCAACGTCAGAA................ 2400
| | | || | || | |||
hj04502 4749 GGACGGGACTCATGTAAGGACTCAATTTGGGGAAGAGCATTCAGTGGCAT 4798
4851 ----+----*----+----*----+----*----+----*----+----* 4900
msj06319 2401 .................................................. 2401
hj04502 4799 GCTGTTAGAGGACTAGTGTCCGAGAATCTCCTCACAGTATCATGTTGCAG 4848
4901 ----+----*----+----*----+----*----+----*----+----* 4950
msj06319 2401 .....CCCCCTTGCTGCGACTGAAACTTCCAGGTCAGGTTGA.TCACACA 2444
|||| ||||| ||| |||||||| ||| |||| ||| |||
hj04502 4849 GAATTCCCCATTGCT....CTGCAACTTCCAAACCAGTTTGAGTCATACA 4894
4951 ----+----*----+----*----+----*----+----*----+---- 4999
msj06319 2445 GATGTTTTCTAAACCTTTGTTGTATTACTGCAATAAATCCTTTAACAGT 2493
||||||||||||| ||| |||||||||||||||||||| |||||||||
hj04502 4895 AATGTTTTCTAAACTTTTATTGTATTACTGCAATAAATCTTTTAACAGT 4943