FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4146.ptfa, 616 aa vs ./tmplib.26680 library 1768401 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.1929+/-0.00479; mu= 19.6286+/- 0.321 mean_var=108.7513+/-24.709, 0's: 0 Z-trim: 13 B-trim: 0 in 0/36 Lambda= 0.1230 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0838 ( 609 res) mpm12149 ( 609) 2282 416 4.8e-117 mKIAA0229 ( 1198 res) mpf00455 (1198) 185 44 6.9e-05 mKIAA1250 ( 1693 res) mbg07525 (1693) 161 40 0.0016 mKIAA1575 ( 1724 res) mpf01039 (1724) 147 38 0.0089 mKIAA1223 ( 600 res) mfj51380 ( 600) 142 36 0.0096 >>mKIAA0838 ( 609 res) mpm12149 (609 aa) initn: 2246 init1: 2246 opt: 2282 Z-score: 2193.7 bits: 416.0 E(): 4.8e-117 Smith-Waterman score: 2282; 63.670% identity (65.103% ungapped) in 545 aa overlap (4-544:70-606) 10 20 30 mKIAA4 TSGAPGPSGWRAGGMRSM--RALQNALSRAGS- : ::. :::. : . ::. :...:. mKIAA0 LCRRPRGGSRPTAGLVAAARLHPWWGGGGRAKGPG---AGGLSSSPSEILQE-LGKGGTP 40 50 60 70 80 90 40 50 60 70 80 mKIAA4 -HGRRGGWGHPSRGPLLGRGVRYYLGEAAAQGRGTPHSHQPQHSDHDASHSGMLPRLGDL . .. .:. .: . : . ::. : : .. ... .:. .. :.:: : :: mKIAA0 PQQQQQQQQQPGASPPAAPGPKDSPGETDAFG-NSEGKEMVAAGDNKIKQ-GLLPSLEDL 100 110 120 130 140 150 90 100 110 120 130 140 mKIAA4 LFYTIAEGQERIPIHKFTTALKATGLQTSDPRLQDCMSKMQRMVQESSSGGLLDRELFQK ::::::::::.::.::: ::::.:::.::::::..::. .. .: .:.: .::..::.: mKIAA0 LFYTIAEGQEKIPVHKFITALKSTGLRTSDPRLKECMDMLRLTLQTTSDGVMLDKDLFKK 160 170 180 190 200 210 150 160 170 180 190 200 mKIAA4 CVSSNIVLLTQAFRKKFVIPDFEEFTGHVDRIFEDAKEPTGGKVAAYIPHLAKSNPDLWG ::.:::::::::::.::::::: ::.:.:...:.::. .::::: :::.::: .::::: mKIAA0 CVQSNIVLLTQAFRRKFVIPDFMSFTSHIDELYESAKKQSGGKVADYIPQLAKFSPDLWG 220 230 240 250 260 270 210 220 230 240 250 260 mKIAA4 VSLCTVDGQRHSVGHTKIPFCLQSCVKPLTYAISVSTLGTDYVHKFVGKEPSGLRYNKLS ::.:::::::::.: ::.::::::::::: :::.:. :::.:::..:::::::::.::: mKIAA0 VSVCTVDGQRHSIGDTKVPFCLQSCVKPLKYAIAVNDLGTEYVHRYVGKEPSGLRFNKLF 280 290 300 310 320 330 270 280 290 300 310 320 mKIAA4 LNEEGIPHNPMVNAGAIVVSSLIKMDCNKAEKFDFVLQYLNKMAGNEFMGFSNATFQSEK :::. :::::::::::::.::::. :.:::::.:.:.::::::::..::::::::::. mKIAA0 LNEDDKPHNPMVNAGAIVVTSLIKQGVNNAEKFDYVMQFLNKMAGNEYVGFSNATFQSER 340 350 360 370 380 390 330 340 350 360 370 380 mKIAA4 ETGDRNYAIGYYLKEKKCFPKGVDMMAALDLYFQLCSVEVTCESGSVMAATLANGGICPI :.::::.:::::::::::::.:.::.. ::.::::::.::::::.:::::::::::.::: mKIAA0 ESGDRNFAIGYYLKEKKCFPEGTDMVGILDFYFQLCSIEVTCESASVMAATLANGGFCPI 400 410 420 430 440 450 390 400 410 420 430 440 mKIAA4 TGESVLSAEAVRNTLSLMHSCGMYDFSGQFAFHVGLPAKSAVSGAILLVVPNVMGMMCLS ::: ::: ::::::::::::::::::::::::::::::::.:.:.::::::::::::: : mKIAA0 TGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLPAKSGVAGGILLVVPNVMGMMCWS 460 470 480 490 500 510 450 460 470 480 490 500 mKIAA4 PPLDKLGNSQRGINFCQKLVSLFNFHNYDNLRHCARKLDPRREGGEVRNKTVVNLLFAAY :::::.::: .::.::. :::: :::::::::: :.:::::::::. :. . : . . mKIAA0 PPLDKMGNSVKGIHFCHDLVSLCNFHNYDNLRHFAKKLDPRREGGDQRH-SFGPLDYESL 520 530 540 550 560 570 510 520 530 540 550 560 mKIAA4 SGDVSALRRFALSAMDMEQKDYDSRTALHVAAAEGHIEVVKFLIEACKVNPFVKDRWGNI . .. ::. . . .. :..: : :... . :. mKIAA0 QQEL-ALKDTVWKKVSPESSDDTSTTVVYRMESLGERS 580 590 600 570 580 590 600 610 mKIAA4 PLDDAVQFNHLEVVKLLQDYHDSYLLSETQAEAAAETLSKENLESMV >>mKIAA0229 ( 1198 res) mpf00455 (1198 aa) initn: 195 init1: 94 opt: 185 Z-score: 180.1 bits: 44.4 E(): 6.9e-05 Smith-Waterman score: 204; 31.016% identity (35.152% ungapped) in 187 aa overlap (444-616:79-257) 420 430 440 450 460 470 mKIAA4 DFSGQFAFHVGLPAKSAVSGAILLVVPNVMGMMCLSPPLDKLGNSQRGINFCQKLVSLFN :. : ::..: . :: : :. . mKIAA0 VEKLLSGKRLSSGFGGGGGGSGSGGGSGGGGLGSSSHPLSSLLSMWRGPN-----VNCVD 50 60 70 80 90 100 480 490 500 510 520 mKIAA4 FHNYDNLRHCARKLDPRREGGEV--RNKTVVN---------LLFAAYSGDVSALRRFAL- .: :.: : :. .:. :: :: ...: : .::..::.. .: . mKIAA0 STGYTPLHHAA--LNGHRDVVEVLLRNDALTNVADSKGCYPLHLAAWKGDAQIVRLLIQQ 110 120 130 140 150 160 530 540 550 560 570 mKIAA4 --SAMDMEQKDYDSRTALHVAAAEGHIEVVKFLIEACKVNPFVKDRWGNIPLDDAVQFNH : ..... :..:::: :: :: :::: :.: ..: ... . ::: :. ... mKIAA0 GPSHTRVNEQNNDNETALHCAAQYGHTEVVKALLEEL-TDPTMRNNKFETPLDLAALYGR 170 180 190 200 210 220 580 590 600 610 mKIAA4 LEVVKLLQDYHDSYLLSETQAEAAAETLSKENLESMV ::::::: : . : :. .. . .... ...: mKIAA0 LEVVKLLLGAHPNLLSCSTRKHTPLHLAARNGHKAVVQVLLDAGMDSNYQTEMGSALHEA 230 240 250 260 270 280 mKIAA0 ALFGKTDVVQILLAAGIDVNIKDNRGLTALDTVRDLPSQKSQQIAALIEDHMTGKRSVKE 290 300 310 320 330 340 >>mKIAA1250 ( 1693 res) mbg07525 (1693 aa) initn: 91 init1: 91 opt: 161 Z-score: 155.7 bits: 40.4 E(): 0.0016 Smith-Waterman score: 161; 30.496% identity (33.858% ungapped) in 141 aa overlap (483-616:103-236) 460 470 480 490 500 mKIAA4 DKLGNSQRGINFCQKLVSLFNFHNYDNLRHCARKL-----DPRREGGEVRNKTVVNLLFA :...: : .::.. ... :. : mKIAA1 LLLQNGAKVNCSDKYGTTPLVWAARKGHLECVKHLLAMGADVDQEGAN----SMTALIVA 80 90 100 110 120 510 520 530 540 550 560 mKIAA4 AYSGDVSALRRFALSAMDMEQKDYDSRTALHVAAAEGHIEVVKFLIEA-CKVNPFVKDRW . .: ....... ... : :. ::: .:. :::::.:. :..: :: . :: mKIAA1 VKGGYTQSVKEILKRNPNVNLTDKDGNTALMIASKEGHIEIVQDLLDAGTYVN--IPDRS 130 140 150 160 170 180 570 580 590 600 610 mKIAA4 GNIPLDDAVQFNHLEVVK-LLQDYHDSYLLSETQAEAAAETLSKENLESMV :. : ::. .:.:.:. ::: : : . .. . : .. : : .:: mKIAA1 GDTVLIGAVRGGHVEIVRALLQKYADIDIRGQDNKTALYWAVEKGN-ATMVRDILQCNPD 190 200 210 220 230 240 mKIAA1 TEICTKDGETPLIKATKMRNIEVVELLLDKGARVSAVDKKGDTPLHVAIRGRSRRLAELL 250 260 270 280 290 300 >>mKIAA1575 ( 1724 res) mpf01039 (1724 aa) initn: 137 init1: 81 opt: 147 Z-score: 142.2 bits: 37.9 E(): 0.0089 Smith-Waterman score: 147; 32.258% identity (33.333% ungapped) in 93 aa overlap (525-616:1458-1548) 500 510 520 530 540 550 mKIAA4 EVRNKTVVNLLFAAYSGDVSALRRFALSAMDMEQKDYDSRTALHVAAAEGHIEVVKFLIE :....: . ::: : :.: ...:. :.: mKIAA1 NKNAGETLLQRAARLGYEEVVLYCLENKVCDVNHRDNAGYCALHEACARGWLNIVRHLLE 1430 1440 1450 1460 1470 1480 560 570 580 590 600 610 mKIAA4 -ACKVNPFVKDRWGNIPLDDAVQFNHLEVVKLLQDYHDSYLLSETQAEAAAETLSKENLE . :: ..: :. :: :::. .:::.:.:: .: . :. .... . .: .: mKIAA1 YGADVNCSAQD--GTRPLHDAVENDHLEIVRLLLSYGADPTLATYSGRTIMKMTHSELME 1490 1500 1510 1520 1530 1540 mKIAA4 SMV ... mKIAA1 KFLTDYLNDLQGRSEDDTSGAWEFYGSSVCEPDDESGYDVLANPPGPEDPDEEEDTYSDL 1550 1560 1570 1580 1590 1600 >>mKIAA1223 ( 600 res) mfj51380 (600 aa) initn: 220 init1: 98 opt: 142 Z-score: 141.6 bits: 36.3 E(): 0.0096 Smith-Waterman score: 142; 31.395% identity (31.765% ungapped) in 86 aa overlap (504-589:123-207) 480 490 500 510 520 530 mKIAA4 FHNYDNLRHCARKLDPRREGGEVRNKTVVNLLFAAYSGDVSALRRFALSAMDMEQKDYDS : . : .... . : .. ..: .: .. mKIAA1 AALEGHRDIVELLFSHGADVNYKDADGRPTLYILALENQLTMAEYFLENGANVEASDAEG 100 110 120 130 140 150 540 550 560 570 580 590 mKIAA4 RTALHVAAAEGHIEVVKFLIEACKVNPFVKDRWGNIPLDDAVQFNHLEVVKLLQDYHDSY ::::::. .::.:.:. :: ::... . : :..:. .:..::.:: .. mKIAA1 RTALHVSCWQGHVEMVRVLI-ACHADVNAADNEKRSALQSAAWQGHVKVVQLLIEHGAVV 160 170 180 190 200 210 600 610 mKIAA4 LLSETQAEAAAETLSKENLESMV mKIAA1 DHTCNQGATALCIAAQEGHVDVVQVLLEHGADPNHADQFGRTAMRVAAKNGHSQIIKLLE 220 230 240 250 260 270 616 residues in 1 query sequences 1768401 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 11:03:17 2006 done: Mon Mar 27 11:03:18 2006 Scan time: 0.810 Display time: 0.130 Function used was FASTA [version 3.4t11 Apr 17, 2002]