FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1487.ptfa, 197 aa vs ./tmplib.26680 library 1768820 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.3896+/-0.00416; mu= 13.4549+/- 0.278 mean_var=80.9453+/-18.223, 0's: 0 Z-trim: 4 B-trim: 0 in 0/36 Lambda= 0.1426 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0715 ( 889 res) mbp06183 ( 889) 464 105 1.1e-23 mKIAA0566 ( 1521 res) mbg09880 (1521) 369 86 1.2e-17 mKIAA1021 ( 1196 res) mpm09008 (1196) 140 38 0.0015 mKIAA0956 ( 1210 res) mpm12246 (1210) 138 38 0.002 >>mKIAA0715 ( 889 res) mbp06183 (889 aa) initn: 471 init1: 443 opt: 464 Z-score: 517.6 bits: 104.8 E(): 1.1e-23 Smith-Waterman score: 464; 40.102% identity (41.799% ungapped) in 197 aa overlap (1-190:635-830) 10 20 30 mKIAA1 IDIFTFGNPLNTAALFIILLHLVIESKSLT ::.::::.:.:: .: :::: ..: :. : mKIAA0 LPTFWVSMADAFYQSLICFFIPYLTYRGSDIDVFTFGTPINTISLTTILLHQAMEMKTWT 610 620 630 640 650 660 40 50 60 70 80 90 mKIAA1 WIHMLVTVGSILSYFFFALAFGALCVTCNPPSNPYGIMRKHMLDPVFYLVCVLTTFVALL .: :: .::.: :: .: ..: ::::: :.::: .:.... ::.:::.:.:: :::: mKIAA0 VLHGLVLLGSFLMYFVVSLIYNATCVTCNSPTNPYWVMERQLSDPTFYLICLLTPVVALL 670 680 690 700 710 720 100 110 120 130 140 150 mKIAA1 PRFLYRVLQGSVFPSPVLRAKYFDRLPPEERAEALKRWRGTAKVNHVASKHASQSAAMSG ::.. :::. : . .:. .:.:: ..: .. ::. . :: :: :: .: mKIAA0 PRYFLLSLQGTYGKSLISKAQKIDKLPIDKRNLEIQNWRSKQRPAP-ASASASASAPATG 730 740 750 760 770 780 160 170 180 190 mKIAA1 ----RPTPGSSAVLAMKSATVSTVEQS---TRETALDRGCSEPGASKMTGSSAS :: :... .:: ..: .. . :: ..: :. mKIAA0 TVHIRPPCHPVPPEAQQNFGASTSKSSGPPRQKHVEDRVLQDPRCSREHSRDDTCTVDTL 790 800 810 820 830 840 mKIAA0 AKLSSGECLLDPNRTVAPTAYSRGQKDVSRHSSKGSHRRSQSSLTI 850 860 870 880 >>mKIAA0566 ( 1521 res) mbg09880 (1521 aa) initn: 374 init1: 347 opt: 369 Z-score: 409.4 bits: 85.5 E(): 1.2e-17 Smith-Waterman score: 370; 31.858% identity (36.548% ungapped) in 226 aa overlap (1-197:1225-1450) 10 20 30 mKIAA1 IDIFTFGNPLNTAALFIILLHLVIESKSLT .:.::.:.:... ::: .:::: ::.:. : mKIAA0 PRAFWLNMVDAAFQSLVCFFIPYLAYYDSDVDVFTWGTPVTAIALFTFLLHLGIETKTWT 1200 1210 1220 1230 1240 1250 40 50 60 70 80 90 mKIAA1 WIHMLVTVGSILSYFFFALAFGALCVTCNPPSNPYGIMRKHMLDPVFYLVCVLTTFVALL :.. :. : . .: :: ... :.:: :::::: :. . ::.:::.:... ..::: mKIAA0 WLNWLACGFSTFLFFSVALIYNTSCATCYPPSNPYWTMQTLLGDPLFYLTCLIAPIAALL 1260 1270 1280 1290 1300 1310 100 110 120 130 mKIAA1 PRFLYRVLQGSVFPSPV-----LRAKYFDRL-----------PPEERAEALKRWRGTAKV ::.....::::.::. . : : .... :: . :.. . . mKIAA0 PRLFFKALQGSLFPTQLQLGRQLAKKPLNKFSDPKETFAQGQPPGHSETELSERKTMGPF 1320 1330 1340 1350 1360 1370 140 150 160 170 180 mKIAA1 NHVASKHASQ----------SAAMSGRPTPGSSAVLAMKSATVSTVEQSTRETALDRGC- . . ::: : ::.:. .. . ... . . ... ... :: mKIAA0 ETLPRDCASQASQFTQQLTCSPEASGEPSAVDTNMPLRENTLLEGLGSQASGSSMPRGAI 1380 1390 1400 1410 1420 1430 190 mKIAA1 SE--PGASKMTGSSAS :: :: :: ..::: mKIAA0 SEVCPGDSKRQSTSASQTARLSSLFHLPSFGSLNWISSLSLASGLGSVLQLSGSSLQMDK 1440 1450 1460 1470 1480 1490 >>mKIAA1021 ( 1196 res) mpm09008 (1196 aa) initn: 127 init1: 127 opt: 140 Z-score: 156.1 bits: 38.3 E(): 0.0015 Smith-Waterman score: 140; 26.852% identity (26.852% ungapped) in 108 aa overlap (4-111:1086-1193) 10 20 30 mKIAA1 IDIFTFGNPLNTAALFIILLHLVIESKSLTWIH .:::. . :. .. . :.:..... :::. mKIAA1 GVFDALVFFFGAYFIFENTTVTINGQMFGNWTFGTLVFTVMVLTVTLKLALDTHYWTWIN 1060 1070 1080 1090 1100 1110 40 50 60 70 80 90 mKIAA1 MLVTVGSILSYFFFALAFGALCVTCNPPSNPYGIMRKHMLDPVFYLVCVLTTFVALLPRF .: ::.: :. :.: .:.. . : .. . . . .: .: . :.::: mKIAA1 HFVIWGSLLFYIAFSLLWGGVIWPFLSYQRMYYVFISMLSSGPAWLGIILLVTVGLLPDV 1120 1130 1140 1150 1160 1170 100 110 120 130 140 150 mKIAA1 LYRVLQGSVFPSPVLRAKYFDRLPPEERAEALKRWRGTAKVNHVASKHASQSAAMSGRPT : .:: ...:. . :.. mKIAA1 LKKVLCRQLWPTATERTQVRS 1180 1190 >>mKIAA0956 ( 1210 res) mpm12246 (1210 aa) initn: 147 init1: 125 opt: 138 Z-score: 153.8 bits: 37.9 E(): 0.002 Smith-Waterman score: 138; 24.074% identity (24.074% ungapped) in 108 aa overlap (4-111:1033-1140) 10 20 30 mKIAA1 IDIFTFGNPLNTAALFIILLHLVIESKSLTWIH .:::. . :. .. . .....:.. :::. mKIAA0 FSHAFIFFFGSYFLVGKDTSLLGNGQMFGNWTFGTLVFTVMVITVTVKMALETHFWTWIN 1010 1020 1030 1040 1050 1060 40 50 60 70 80 90 mKIAA1 MLVTVGSILSYFFFALAFGALCVTCNPPSNPYGIMRKHMLDPVFYLVCVLTTFVALLPRF ::: :::. ::.:.: .:.. .: : .. . . . ... .: . . :. mKIAA0 HLVTWGSIIFYFIFSLFYGGILWPFLGSQNMYFVFIQLLSSGSAWFAILLMVVTCLFIDV 1070 1080 1090 1100 1110 1120 100 110 120 130 140 150 mKIAA1 LYRVLQGSVFPSPVLRAKYFDRLPPEERAEALKRWRGTAKVNHVASKHASQSAAMSGRPT . .:.. .. :. . .:. mKIAA0 VKKVFDRQLHPTSTEKAQLAEAHSSVKCLDSVCCFPGETPCASVGRMLERVIGRCSPNHI 1130 1140 1150 1160 1170 1180 197 residues in 1 query sequences 1768820 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:46:24 2006 done: Mon Mar 27 10:46:24 2006 Scan time: 0.440 Display time: 0.030 Function used was FASTA [version 3.4t11 Apr 17, 2002]