FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1988.ptfa, 691 aa vs ./tmplib.26680 library 1768326 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 3.9148+/-0.00419; mu= 20.5090+/- 0.281 mean_var=87.3375+/-19.796, 0's: 0 Z-trim: 6 B-trim: 0 in 0/36 Lambda= 0.1372 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mFLJ00137 ( 1396 res) mbh01290 (1396) 169 44 8.4e-05 mKIAA0596 ( 1070 res) mbg02022 (1070) 138 38 0.0051 >>mFLJ00137 ( 1396 res) mbh01290 (1396 aa) initn: 156 init1: 71 opt: 169 Z-score: 178.6 bits: 44.5 E(): 8.4e-05 Smith-Waterman score: 209; 22.791% identity (25.926% ungapped) in 430 aa overlap (31-422:189-604) 10 20 30 40 50 mKIAA1 FPAVGMGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQE-KF :: ..:. : : . ...:. .. .. . mFLJ00 VLKLPFLKRRSGGVDPTVKERLWLTLHWPKNQPTQLVSSCFGGELLLWDLTQSWRRKYTL 160 170 180 190 200 210 60 70 80 90 100 110 mKIAA1 FP----GHE-SRGTEALC----WAGGQRLFSAGLNGEILEYDLQALNIKYTLDAFGGPIW : ::. :: . :: : : :.:.... .. .:. .:. .:: ..:: . mFLJ00 FSTSAEGHNHSRIVFNLCSLKTEDGKQLLLSTSMDRDVKCWDMATLECCWTLPSLGGFAY 220 230 240 250 260 270 120 130 140 150 160 mKIAA1 SMTASPS--GSQLLVGCEDGSVKLFEVTPEKIQF-ARNF-DRQKSRILSLCWHPAGTH-V :.. :: :: : .: :: ...... : .. ..:: . ::.. .::::: . mFLJ00 SLAFSPVDVGS-LAIGVGDGMIRVWNTLSIKNNYDVKNFWQGVKSKVTALCWHPNKEGCL 280 290 300 310 320 330 170 180 190 200 210 mKIAA1 AAGSLD-YISVFDVKSG------SIIRKMVLDRQHLGVTKSRCIVWGVAFLSDGTVISVD : :. : ....:. :. : .: .. : : . : . . :. : mFLJ00 AFGTDDGKVGLYDTCSNKPPQISSTYHKKTVYRLAWGPPVPPMSLGGEGDRPSLTLYSCG 340 350 360 370 380 390 220 230 240 250 260 mKIAA1 SVGKV---QLWDSATGTLVKSHLVANAD-------VQS-IAVADQEDSFVVGTAEGTVFH . : : . : . .. ..:: ... :.. :. . ...:. .:.. mFLJ00 GEGVVLQHNPWKLSGEAFDINKLVRDTNSIRYKLPVHTEISWKGDGKVLALGNEDGSIEI 400 410 420 430 440 450 270 280 290 300 310 320 mKIAA1 FQL--VSMTSNSSEKQWVRTKPFQHHTHDVRAVAHSPTALISGGTDTHLVIRPLMERVEV ::. . . . .... . . :: : : . :...:... .. .. : mFLJ00 FQVPNLRLLCTIQQHHKLVNAIVWHHEHGSRPEL---SCLLASGSNNAVIYVHNLKAVLE 460 470 480 490 500 510 330 340 350 360 370 380 mKIAA1 KNYDAALRKITFPHRRLISCSKRRQLLLFQFAHHLELWRLGSTSATGKNGDTL---PLSK .: :. . :: :.: : . . . : .. :: . ..:.. :.: :: . mFLJ00 SNPDSPIT-ITEPYRTLSGHTAKITSLAWS-PHHDGRLVSACYDGTAQVWDALREEPLFN 520 530 540 550 560 570 390 400 410 420 430 440 mKIAA1 NADHLLHLKTKGPENIICSCVSPCGSWIAYSTASRFFLYRLKYERDNISLQRVSKLPSFL : .: ..: :: :: :. : .:: mFLJ00 FRGH------RG--RLLCVAWSPVDPECIYSGADDFCVYRWLTSMQDHSRPPQGKKCIEL 580 590 600 610 620 450 460 470 480 490 500 mKIAA1 RSALHILFSEDSTKLLVASNQGSLHIVHLSEGSFKHLHTFQPQSGTVEAMCLLAVSPDGN mFLJ00 EKKRLSQFKPKLKKKKKPTLRLPVKQDSSVGNEDESVKENSGPAENGLSDQDGEEEAQEP 630 640 650 660 670 680 >>mKIAA0596 ( 1070 res) mbg02022 (1070 aa) initn: 126 init1: 66 opt: 138 Z-score: 146.5 bits: 38.2 E(): 0.0051 Smith-Waterman score: 153; 20.833% identity (23.585% ungapped) in 240 aa overlap (6-226:64-294) 10 20 mKIAA1 FPAVGMGEFKVHRVRFFNYV------PSGIRCVAY :: ...:... .. . : : :. : mKIAA0 KADGSLMDPRVGIRSVCISPNGQHLASGDRMGTLRIHELQSLSEMLKVEAHDSEILCLEY 40 50 60 70 80 90 30 40 50 60 70 80 mKIAA1 NNQSN---RLAVSRTDGTVEIYNLSANYFQEKFFPGHESRGTEA-LCWAGGQ-RLFSAGL .. .. :: . : ... . . .: .. . : : : . . . :: :..: : mKIAA0 SKPDTGLKLLASASRDRLIHVLDAGREYSLQQTLDEHSSSITAVKFAASDGQVRMISCGA 100 110 120 130 140 150 90 100 110 120 130 mKIAA1 NGEILEYDLQ--ALNIKYTLD---AFGGPIWSMTASPSGSQLLVGCEDGSVKLFEVTPEK . : : . ....: . ...: . :: . .::.: ....:... : mKIAA0 DKSIYFRTAQKSGEGVQFTRTHHVVRKTTLYDMDVEPSWKYTAIGCQDRNIRIFNISSGK 160 170 180 190 200 210 140 150 160 170 180 190 mKIAA1 IQ-FARNFDRQKSRILSLCWHPAGTHVAAGSLDY-ISVFDVKSGSIIRKMVLDRQHLGVT . . .. . . . .... :.: ..:.. : .:.:: .:: . : .: . mKIAA0 QKKLFKGSQGEDGTLIKVQTDPSGIYIATSCSDKNLSIFDFSSGECVATM------FGHS 220 230 240 250 260 200 210 220 230 240 250 mKIAA1 KSRCIVWGVAFLSD-GTVISVDSVGKVQLWDSATGTLVKSHLVANADVQSIAVADQEDSF . :: :. : .: .:::.. . . .: mKIAA0 E---IVTGMKFSNDCKHLISVSGDSCIFVWRLSSEMTISMRQRLAELRQRQRGIKQQGPT 270 280 290 300 310 320 691 residues in 1 query sequences 1768326 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:57:07 2006 done: Mon Mar 27 10:57:08 2006 Scan time: 0.860 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]