# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/msj01112.fasta.nr -Q ../query/mKIAA0112.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0112, 373 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7919079 sequences Expectation_n fit: rho(ln(x))= 5.4754+/-0.000196; mu= 10.1013+/- 0.011 mean_var=99.9906+/-19.378, 0's: 30 Z-trim: 34 B-trim: 3426 in 1/64 Lambda= 0.128261 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|21362904|sp|Q9CYH6.1|RRS1_MOUSE RecName: Full=R ( 365) 2449 463.2 3.9e-128 gi|7670442|dbj|BAA95072.1| unnamed protein product ( 365) 2446 462.7 5.8e-128 gi|12860310|dbj|BAB31912.1| unnamed protein produc ( 365) 2442 461.9 9.6e-128 gi|12845436|dbj|BAB26750.1| unnamed protein produc ( 365) 2440 461.5 1.2e-127 gi|182676579|sp|A1A5P2.1|RRS1_RAT RecName: Full=Ri ( 365) 2327 440.6 2.5e-121 gi|21431847|sp|Q15050.2|RRS1_HUMAN RecName: Full=R ( 365) 2229 422.5 7e-116 gi|194036669|ref|XP_001926363.1| PREDICTED: simila ( 551) 2222 421.4 2.3e-115 gi|109086632|ref|XP_001100635.1| PREDICTED: simila ( 530) 2221 421.2 2.6e-115 gi|149721357|ref|XP_001494863.1| PREDICTED: simila ( 365) 2218 420.5 2.9e-115 gi|122136026|sp|Q2KIH4.1|RRS1_BOVIN RecName: Full= ( 365) 2185 414.4 2e-113 gi|57107921|ref|XP_544107.1| PREDICTED: similar to ( 365) 2177 412.9 5.6e-113 gi|126321316|ref|XP_001379079.1| PREDICTED: simila ( 363) 1841 350.7 2.9e-94 gi|149572010|ref|XP_001509960.1| PREDICTED: simila ( 508) 1720 328.5 2e-87 gi|54261637|gb|AAH84301.1| Rrs1 protein [Xenopus l ( 344) 1525 292.2 1.1e-76 gi|47940235|gb|AAH72081.1| MGC78981 protein [Xenop ( 342) 1489 285.5 1.1e-74 gi|47207991|emb|CAF91693.1| unnamed protein produc ( 334) 1474 282.8 7.5e-74 gi|209736730|gb|ACI69234.1| Ribosome biogenesis re ( 353) 1451 278.5 1.5e-72 gi|45709905|gb|AAH67632.1| Rrs1 protein [Danio rer ( 345) 1446 277.6 2.8e-72 gi|33585885|gb|AAH55615.1| RRS1 ribosome biogenesi ( 346) 1445 277.4 3.2e-72 gi|158253555|gb|AAI54207.1| Rrs1 protein [Danio re ( 346) 1424 273.5 4.7e-71 gi|210130442|gb|EEA78113.1| hypothetical protein B ( 336) 1157 224.1 3.4e-56 gi|210101102|gb|EEA49171.1| hypothetical protein B ( 337) 1152 223.2 6.5e-56 gi|72010693|ref|XP_781111.1| PREDICTED: similar to ( 335) 1010 196.9 5.3e-48 gi|198435348|ref|XP_002125582.1| PREDICTED: simila ( 324) 1001 195.2 1.6e-47 gi|221126069|ref|XP_002164297.1| PREDICTED: simila ( 335) 960 187.6 3.2e-45 gi|54650780|gb|AAV36969.1| LD45683p [Drosophila me ( 359) 889 174.5 3.1e-41 gi|21483408|gb|AAM52679.1| LD24586p [Drosophila me ( 361) 889 174.5 3.1e-41 gi|194128584|gb|EDW50627.1| GM14731 [Drosophila se ( 349) 887 174.2 3.9e-41 gi|193919677|gb|EDW18544.1| GI13300 [Drosophila mo ( 347) 886 174.0 4.4e-41 gi|194195788|gb|EDX09364.1| GD13910 [Drosophila si ( 349) 886 174.0 4.4e-41 gi|194179951|gb|EDW93562.1| GE21520 [Drosophila ya ( 349) 886 174.0 4.4e-41 gi|220902479|gb|AAN12230.2| CG32409 [Drosophila me ( 349) 886 174.0 4.4e-41 gi|190653821|gb|EDV51064.1| GG15298 [Drosophila er ( 349) 881 173.0 8.4e-41 gi|194154355|gb|EDW69539.1| GJ12069 [Drosophila vi ( 347) 871 171.2 3e-40 gi|198151125|gb|EAL30202.2| GA16881 [Drosophila ps ( 344) 865 170.1 6.4e-40 gi|194158511|gb|EDW73412.1| GK16661 [Drosophila wi ( 349) 859 169.0 1.4e-39 gi|193898603|gb|EDV97469.1| GH14686 [Drosophila gr ( 344) 848 166.9 5.7e-39 gi|167867283|gb|EDS30666.1| regulator of ribosome ( 352) 846 166.6 7.5e-39 gi|94469176|gb|ABF18437.1| regulator of ribosome s ( 347) 832 164.0 4.5e-38 gi|12859373|dbj|BAB31631.1| unnamed protein produc ( 125) 822 161.7 7.9e-38 gi|190587325|gb|EDV27367.1| hypothetical protein T ( 348) 809 159.7 8.5e-37 gi|156219160|gb|EDO40046.1| predicted protein [Nem ( 244) 806 159.0 9.8e-37 gi|157020644|gb|EAA04194.3| AGAP006808-PA [Anophel ( 346) 791 156.4 8.6e-36 gi|110758413|ref|XP_394666.3| PREDICTED: similar t ( 339) 757 150.1 6.6e-34 gi|193610717|ref|XP_001942913.1| PREDICTED: simila ( 343) 750 148.8 1.6e-33 gi|187035405|emb|CAP25286.1| Hypothetical protein ( 329) 735 146.0 1.1e-32 gi|21362907|sp|Q9XVT0.1|RRS1_CAEEL RecName: Full=R ( 333) 719 143.0 8.5e-32 gi|156553496|ref|XP_001600166.1| PREDICTED: simila ( 292) 685 136.7 6.1e-30 gi|220724315|gb|EED78367.1| predicted protein [Pos ( 315) 619 124.5 3.1e-26 gi|163771427|gb|EDQ85094.1| predicted protein [Mon (2077) 628 127.0 3.6e-26 >>gi|21362904|sp|Q9CYH6.1|RRS1_MOUSE RecName: Full=Ribos (365 aa) initn: 2449 init1: 2449 opt: 2449 Z-score: 2456.7 bits: 463.2 E(): 3.9e-128 Smith-Waterman score: 2449; 100.000% identity (100.000% similar) in 365 aa overlap (9-373:1-365) 10 20 30 40 50 60 mKIAA0 GIRAAARAMEGQRVEELLAKAEQEEAEKLQRITVHKELELEFDLGNLLASDRNPPTVLRQ :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|213 MEGQRVEELLAKAEQEEAEKLQRITVHKELELEFDLGNLLASDRNPPTVLRQ 10 20 30 40 50 70 80 90 100 110 120 mKIAA0 AGPSPEAELRALARDNTQLLINQLWRLPTERVEEAVVARLPEPATRLPREKPLPRPRPLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|213 AGPSPEAELRALARDNTQLLINQLWRLPTERVEEAVVARLPEPATRLPREKPLPRPRPLT 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA0 RWQQFARLKGIRPKKKTNLVWDEASGQWRRRWGYKRARDDTKEWLIEVPGSADPMEDQFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|213 RWQQFARLKGIRPKKKTNLVWDEASGQWRRRWGYKRARDDTKEWLIEVPGSADPMEDQFA 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA0 KRTQAKKERVAKNELNRLRNLARAHKMQMPSSAGLHPTGHQSKEELGRAMQVAKVSTASV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|213 KRTQAKKERVAKNELNRLRNLARAHKMQMPSSAGLHPTGHQSKEELGRAMQVAKVSTASV 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA0 GRFQERLPKEKAPRGSGKKRKFQPLFGDFAAEKKNQLELLRVMNSKKPRLDVTRATNKQM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|213 GRFQERLPKEKAPRGSGKKRKFQPLFGDFAAEKKNQLELLRVMNSKKPRLDVTRATNKQM 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA0 REEDQEEAAKRRKMSQKGKRKGGRQGPSGKRKGGPPGQGEKRKGGLGSKKHSWPSALAGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|213 REEDQEEAAKRRKMSQKGKRKGGRQGPSGKRKGGPPGQGEKRKGGLGSKKHSWPSALAGK 300 310 320 330 340 350 370 mKIAA0 KKGVPPQGGKRRK ::::::::::::: gi|213 KKGVPPQGGKRRK 360 >>gi|7670442|dbj|BAA95072.1| unnamed protein product [Mu (365 aa) initn: 2446 init1: 2446 opt: 2446 Z-score: 2453.7 bits: 462.7 E(): 5.8e-128 Smith-Waterman score: 2446; 99.726% identity (100.000% similar) in 365 aa overlap (9-373:1-365) 10 20 30 40 50 60 mKIAA0 GIRAAARAMEGQRVEELLAKAEQEEAEKLQRITVHKELELEFDLGNLLASDRNPPTVLRQ :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|767 MEGQRVEELLAKAEQEEAEKLQRITVHKELELEFDLGNLLASDRNPPTVLRQ 10 20 30 40 50 70 80 90 100 110 120 mKIAA0 AGPSPEAELRALARDNTQLLINQLWRLPTERVEEAVVARLPEPATRLPREKPLPRPRPLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|767 AGPSPEAELRALARDNTQLLINQLWRLPTERVEEAVVARLPEPATRLPREKPLPRPRPLT 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA0 RWQQFARLKGIRPKKKTNLVWDEASGQWRRRWGYKRARDDTKEWLIEVPGSADPMEDQFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|767 RWQQFARLKGIRPKKKTNLVWDEASGQWRRRWGYKRARDDTKEWLIEVPGSADPMEDQFA 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA0 KRTQAKKERVAKNELNRLRNLARAHKMQMPSSAGLHPTGHQSKEELGRAMQVAKVSTASV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|767 KRTQAKKERVAKNELNRLRNLARAHKMQMPSSAGLHPTGHQSKEELGRAMQVAKVSTASV 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA0 GRFQERLPKEKAPRGSGKKRKFQPLFGDFAAEKKNQLELLRVMNSKKPRLDVTRATNKQM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|767 GRFQERLPKEKAPRGSGKKRKFQPLFGDFAAEKKNQLELLRVMNSKKPRLDVTRATNKQM 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA0 REEDQEEAAKRRKMSQKGKRKGGRQGPSGKRKGGPPGQGEKRKGGLGSKKHSWPSALAGK :::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::: gi|767 REEDQEEAAKRRKMSQKGKRKGGRQGPSGKRRGGPPGQGEKRKGGLGSKKHSWPSALAGK 300 310 320 330 340 350 370 mKIAA0 KKGVPPQGGKRRK ::::::::::::: gi|767 KKGVPPQGGKRRK 360 >>gi|12860310|dbj|BAB31912.1| unnamed protein product [M (365 aa) initn: 2442 init1: 2442 opt: 2442 Z-score: 2449.7 bits: 461.9 E(): 9.6e-128 Smith-Waterman score: 2442; 99.726% identity (100.000% similar) in 365 aa overlap (9-373:1-365) 10 20 30 40 50 60 mKIAA0 GIRAAARAMEGQRVEELLAKAEQEEAEKLQRITVHKELELEFDLGNLLASDRNPPTVLRQ :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 MEGQRVEELLAKAEQEEAEKLQRITVHKELELEFDLGNLLASDRNPPTVLRQ 10 20 30 40 50 70 80 90 100 110 120 mKIAA0 AGPSPEAELRALARDNTQLLINQLWRLPTERVEEAVVARLPEPATRLPREKPLPRPRPLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 AGPSPEAELRALARDNTQLLINQLWRLPTERVEEAVVARLPEPATRLPREKPLPRPRPLT 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA0 RWQQFARLKGIRPKKKTNLVWDEASGQWRRRWGYKRARDDTKEWLIEVPGSADPMEDQFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 RWQQFARLKGIRPKKKTNLVWDEASGQWRRRWGYKRARDDTKEWLIEVPGSADPMEDQFA 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA0 KRTQAKKERVAKNELNRLRNLARAHKMQMPSSAGLHPTGHQSKEELGRAMQVAKVSTASV ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|128 KRTQAKKERVAKGELNRLRNLARAHKMQMPSSAGLHPTGHQSKEELGRAMQVAKVSTASV 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA0 GRFQERLPKEKAPRGSGKKRKFQPLFGDFAAEKKNQLELLRVMNSKKPRLDVTRATNKQM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 GRFQERLPKEKAPRGSGKKRKFQPLFGDFAAEKKNQLELLRVMNSKKPRLDVTRATNKQM 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA0 REEDQEEAAKRRKMSQKGKRKGGRQGPSGKRKGGPPGQGEKRKGGLGSKKHSWPSALAGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 REEDQEEAAKRRKMSQKGKRKGGRQGPSGKRKGGPPGQGEKRKGGLGSKKHSWPSALAGK 300 310 320 330 340 350 370 mKIAA0 KKGVPPQGGKRRK ::::::::::::: gi|128 KKGVPPQGGKRRK 360 >>gi|12845436|dbj|BAB26750.1| unnamed protein product [M (365 aa) initn: 2440 init1: 2440 opt: 2440 Z-score: 2447.7 bits: 461.5 E(): 1.2e-127 Smith-Waterman score: 2440; 99.726% identity (99.726% similar) in 365 aa overlap (9-373:1-365) 10 20 30 40 50 60 mKIAA0 GIRAAARAMEGQRVEELLAKAEQEEAEKLQRITVHKELELEFDLGNLLASDRNPPTVLRQ :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 MEGQRVEELLAKAEQEEAEKLQRITVHKELELEFDLGNLLASDRNPPTVLRQ 10 20 30 40 50 70 80 90 100 110 120 mKIAA0 AGPSPEAELRALARDNTQLLINQLWRLPTERVEEAVVARLPEPATRLPREKPLPRPRPLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 AGPSPEAELRALARDNTQLLINQLWRLPTERVEEAVVARLPEPATRLPREKPLPRPRPLT 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA0 RWQQFARLKGIRPKKKTNLVWDEASGQWRRRWGYKRARDDTKEWLIEVPGSADPMEDQFA :::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::: gi|128 RWQQFARLKGIRPKKKTNLVWDVASGQWRRRWGYKRARDDTKEWLIEVPGSADPMEDQFA 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA0 KRTQAKKERVAKNELNRLRNLARAHKMQMPSSAGLHPTGHQSKEELGRAMQVAKVSTASV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 KRTQAKKERVAKNELNRLRNLARAHKMQMPSSAGLHPTGHQSKEELGRAMQVAKVSTASV 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA0 GRFQERLPKEKAPRGSGKKRKFQPLFGDFAAEKKNQLELLRVMNSKKPRLDVTRATNKQM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 GRFQERLPKEKAPRGSGKKRKFQPLFGDFAAEKKNQLELLRVMNSKKPRLDVTRATNKQM 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA0 REEDQEEAAKRRKMSQKGKRKGGRQGPSGKRKGGPPGQGEKRKGGLGSKKHSWPSALAGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 REEDQEEAAKRRKMSQKGKRKGGRQGPSGKRKGGPPGQGEKRKGGLGSKKHSWPSALAGK 300 310 320 330 340 350 370 mKIAA0 KKGVPPQGGKRRK ::::::::::::: gi|128 KKGVPPQGGKRRK 360 >>gi|182676579|sp|A1A5P2.1|RRS1_RAT RecName: Full=Riboso (365 aa) initn: 2327 init1: 2327 opt: 2327 Z-score: 2334.7 bits: 440.6 E(): 2.5e-121 Smith-Waterman score: 2327; 95.068% identity (98.356% similar) in 365 aa overlap (9-373:1-365) 10 20 30 40 50 60 mKIAA0 GIRAAARAMEGQRVEELLAKAEQEEAEKLQRITVHKELELEFDLGNLLASDRNPPTVLRQ :::: ::::::::.:::::::::::::::::::::::::::::::::::::: gi|182 MEGQSVEELLAKAKQEEAEKLQRITVHKELELEFDLGNLLASDRNPPTVLRQ 10 20 30 40 50 70 80 90 100 110 120 mKIAA0 AGPSPEAELRALARDNTQLLINQLWRLPTERVEEAVVARLPEPATRLPREKPLPRPRPLT ::::::::::::::::::::.::::.:::::::::::::::::::::::::::::::::: gi|182 AGPSPEAELRALARDNTQLLVNQLWQLPTERVEEAVVARLPEPATRLPREKPLPRPRPLT 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA0 RWQQFARLKGIRPKKKTNLVWDEASGQWRRRWGYKRARDDTKEWLIEVPGSADPMEDQFA :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|182 RWQQFARLKGIRPKKKTNLVWDEVSGQWRRRWGYKRARDDTKEWLIEVPGSADPMEDQFA 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA0 KRTQAKKERVAKNELNRLRNLARAHKMQMPSSAGLHPTGHQSKEELGRAMQVAKVSTASV :: .:::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 KRIRAKKERVAKNELNRLRNLARAHKMQMPSSAGLHPTGHQSKEELGRAMQVAKVSTASV 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA0 GRFQERLPKEKAPRGSGKKRKFQPLFGDFAAEKKNQLELLRVMNSKKPRLDVTRATNKQM ::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::: gi|182 GRFQERLPKEKAPRGSGKKRKFQPLFGDFAAEKKNQLELLRVMNSKKPQLDVTRATNKQM 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA0 REEDQEEAAKRRKMSQKGKRKGGRQGPSGKRKGGPPGQGEKRKGGLGSKKHSWPSALAGK :::::::::::::::::::.:::::::::.::::::.::::::: ::.:::: : ::.:: gi|182 REEDQEEAAKRRKMSQKGKKKGGRQGPSGRRKGGPPSQGEKRKGVLGGKKHSRPPALGGK 300 310 320 330 340 350 370 mKIAA0 KKGVPPQGGKRRK ::::: .:::::: gi|182 KKGVPHHGGKRRK 360 >>gi|21431847|sp|Q15050.2|RRS1_HUMAN RecName: Full=Ribos (365 aa) initn: 2229 init1: 2229 opt: 2229 Z-score: 2236.7 bits: 422.5 E(): 7e-116 Smith-Waterman score: 2229; 90.685% identity (96.712% similar) in 365 aa overlap (9-373:1-365) 10 20 30 40 50 60 mKIAA0 GIRAAARAMEGQRVEELLAKAEQEEAEKLQRITVHKELELEFDLGNLLASDRNPPTVLRQ :::: ::::::::::.::::::::::::::::.::::::::::::::: :: gi|214 MEGQSVEELLAKAEQDEAEKLQRITVHKELELQFDLGNLLASDRNPPTGLRC 10 20 30 40 50 70 80 90 100 110 120 mKIAA0 AGPSPEAELRALARDNTQLLINQLWRLPTERVEEAVVARLPEPATRLPREKPLPRPRPLT :::.:::::.:::::::::::::::.:::::::::.:::::::.:::::::::::::::: gi|214 AGPTPEAELQALARDNTQLLINQLWQLPTERVEEAIVARLPEPTTRLPREKPLPRPRPLT 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA0 RWQQFARLKGIRPKKKTNLVWDEASGQWRRRWGYKRARDDTKEWLIEVPGSADPMEDQFA :::::::::::::::::::::::.::::::::::.:::::::::::::::.:::.::::: gi|214 RWQQFARLKGIRPKKKTNLVWDEVSGQWRRRWGYQRARDDTKEWLIEVPGNADPLEDQFA 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA0 KRTQAKKERVAKNELNRLRNLARAHKMQMPSSAGLHPTGHQSKEELGRAMQVAKVSTASV :: :::::::::::::::::::::::::.::.:::::::::::::::::::::::::::: gi|214 KRIQAKKERVAKNELNRLRNLARAHKMQLPSAAGLHPTGHQSKEELGRAMQVAKVSTASV 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA0 GRFQERLPKEKAPRGSGKKRKFQPLFGDFAAEKKNQLELLRVMNSKKPRLDVTRATNKQM :::::::::::.::::::::::::::::::::::::::::::::::::.::::::::::: gi|214 GRFQERLPKEKVPRGSGKKRKFQPLFGDFAAEKKNQLELLRVMNSKKPQLDVTRATNKQM 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA0 REEDQEEAAKRRKMSQKGKRKGGRQGPSGKRKGGPPGQGEKRKGGLGSKKHSWPSALAGK :::::::::::::::::::::::::::.::::::::.:: :::::::.: .: : .:.:: gi|214 REEDQEEAAKRRKMSQKGKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGK 300 310 320 330 340 350 370 mKIAA0 KKGVPPQGGKRRK .:: :::::: gi|214 RKGGQRPGGKRRK 360 >>gi|194036669|ref|XP_001926363.1| PREDICTED: similar to (551 aa) initn: 2222 init1: 2222 opt: 2222 Z-score: 2227.4 bits: 421.4 E(): 2.3e-115 Smith-Waterman score: 2222; 89.674% identity (96.739% similar) in 368 aa overlap (6-373:184-551) 10 20 30 mKIAA0 GIRAAARAMEGQRVEELLAKAEQEEAEKLQRITVH : ::::: :::::::::..::::::::::: gi|194 DERLGDCTWLCCLGLCRRYWRIDWNCYPGTAGAMEGQSVEELLAKAERDEAEKLQRITVH 160 170 180 190 200 210 40 50 60 70 80 90 mKIAA0 KELELEFDLGNLLASDRNPPTVLRQAGPSPEAELRALARDNTQLLINQLWRLPTERVEEA ::::::::::::::::::::: ::.:::. ::::::::::::::::::::.::::::::. gi|194 KELELEFDLGNLLASDRNPPTGLRHAGPTKEAELRALARDNTQLLINQLWQLPTERVEET 220 230 240 250 260 270 100 110 120 130 140 150 mKIAA0 VVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEASGQWRRRWGYK .:::::::.::::::::.::::::::::::::::::::::::::::::.::::::::::. gi|194 LVARLPEPTTRLPREKPVPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRRRWGYQ 280 290 300 310 320 330 160 170 180 190 200 210 mKIAA0 RARDDTKEWLIEVPGSADPMEDQFAKRTQAKKERVAKNELNRLRNLARAHKMQMPSSAGL ::::::::::::::..::::::::::: :::::::::::::::::::::::::.::.::. gi|194 RARDDTKEWLIEVPSNADPMEDQFAKRIQAKKERVAKNELNRLRNLARAHKMQLPSAAGM 340 350 360 370 380 390 220 230 240 250 260 270 mKIAA0 HPTGHQSKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKKRKFQPLFGDFAAEKKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|194 HPTGHQSKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKKRKFQPLFGDFAAEKKS 400 410 420 430 440 450 280 290 300 310 320 330 mKIAA0 QLELLRVMNSKKPRLDVTRATNKQMREEDQEEAAKRRKMSQKGKRKGGRQGPSGKRKGGP :::.:::::::::.::::::::::::::::::::::::::::::::::::::.::::::: gi|194 QLEMLRVMNSKKPQLDVTRATNKQMREEDQEEAAKRRKMSQKGKRKGGRQGPGGKRKGGP 460 470 480 490 500 510 340 350 360 370 mKIAA0 PGQGEKRKGGLGSKKHSWPSALAGKKKGVPPQGGKRRK :.:: :::::.::: .: : .:.::.:: ::::::: gi|194 PSQGGKRKGGVGSKMNSGPPGLGGKRKGGQHQGGKRRK 520 530 540 550 >>gi|109086632|ref|XP_001100635.1| PREDICTED: similar to (530 aa) initn: 2221 init1: 2221 opt: 2221 Z-score: 2226.7 bits: 421.2 E(): 2.6e-115 Smith-Waterman score: 2221; 90.217% identity (96.196% similar) in 368 aa overlap (6-373:163-530) 10 20 30 mKIAA0 GIRAAARAMEGQRVEELLAKAEQEEAEKLQRITVH : ::::: ::::::::::.::::::::::: gi|109 PASARGYVAGVWAAAVGKVTSAAAPKRVSRAGAMEGQSVEELLAKAEQDEAEKLQRITVH 140 150 160 170 180 190 40 50 60 70 80 90 mKIAA0 KELELEFDLGNLLASDRNPPTVLRQAGPSPEAELRALARDNTQLLINQLWRLPTERVEEA ::::::::::::::::::::: :: :::.:::::::::::::::::::::.::::::::. gi|109 KELELEFDLGNLLASDRNPPTGLRCAGPTPEAELRALARDNTQLLINQLWQLPTERVEET 200 210 220 230 240 250 100 110 120 130 140 150 mKIAA0 VVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEASGQWRRRWGYK .:::::::.:::::::::::::::::::::::::::::::::::::::.:.::::::::. gi|109 IVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSSQWRRRWGYQ 260 270 280 290 300 310 160 170 180 190 200 210 mKIAA0 RARDDTKEWLIEVPGSADPMEDQFAKRTQAKKERVAKNELNRLRNLARAHKMQMPSSAGL :::::::::::::::.:::.::::::: :::::::::::::::::::::::::.::.::: gi|109 RARDDTKEWLIEVPGNADPLEDQFAKRIQAKKERVAKNELNRLRNLARAHKMQLPSAAGL 320 330 340 350 360 370 220 230 240 250 260 270 mKIAA0 HPTGHQSKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKKRKFQPLFGDFAAEKKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 HPTGHQSKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKKRKFQPLFGDFAAEKKN 380 390 400 410 420 430 280 290 300 310 320 330 mKIAA0 QLELLRVMNSKKPRLDVTRATNKQMREEDQEEAAKRRKMSQKGKRKGGRQGPSGKRKGGP :::::::::::::.::::::::::::::::::::::::::::::::::::::.::::::: gi|109 QLELLRVMNSKKPQLDVTRATNKQMREEDQEEAAKRRKMSQKGKRKGGRQGPGGKRKGGP 440 450 460 470 480 490 340 350 360 370 mKIAA0 PGQGEKRKGGLGSKKHSWPSALAGKKKGVPPQGGKRRK :.:: ::::.::.: .: : .:. :.:: :::::: gi|109 PSQGGKRKGSLGGKMNSGPRGLGDKRKGGQRPGGKRRK 500 510 520 530 >>gi|149721357|ref|XP_001494863.1| PREDICTED: similar to (365 aa) initn: 2218 init1: 2218 opt: 2218 Z-score: 2225.7 bits: 420.5 E(): 2.9e-115 Smith-Waterman score: 2218; 89.589% identity (97.260% similar) in 365 aa overlap (9-373:1-365) 10 20 30 40 50 60 mKIAA0 GIRAAARAMEGQRVEELLAKAEQEEAEKLQRITVHKELELEFDLGNLLASDRNPPTVLRQ :::. :::::::::..:::::::::::::::::::::::::.::::::..:. gi|149 MEGHSVEELLAKAERDEAEKLQRITVHKELELEFDLGNLLATDRNPPTAVRS 10 20 30 40 50 70 80 90 100 110 120 mKIAA0 AGPSPEAELRALARDNTQLLINQLWRLPTERVEEAVVARLPEPATRLPREKPLPRPRPLT :::.:::.:::::::::::::::::.:::::::::.:::::::.::::::::.::::::: gi|149 AGPTPEADLRALARDNTQLLINQLWQLPTERVEEALVARLPEPTTRLPREKPVPRPRPLT 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA0 RWQQFARLKGIRPKKKTNLVWDEASGQWRRRWGYKRARDDTKEWLIEVPGSADPMEDQFA :::::::::::::::::::::::.::::::::::.:::::::::::::::.::::::::: gi|149 RWQQFARLKGIRPKKKTNLVWDEVSGQWRRRWGYQRARDDTKEWLIEVPGGADPMEDQFA 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA0 KRTQAKKERVAKNELNRLRNLARAHKMQMPSSAGLHPTGHQSKEELGRAMQVAKVSTASV :: ::::::::::::::::::::::: :.::.::.::::::::::::::::::::::::: gi|149 KRIQAKKERVAKNELNRLRNLARAHKTQLPSAAGMHPTGHQSKEELGRAMQVAKVSTASV 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA0 GRFQERLPKEKAPRGSGKKRKFQPLFGDFAAEKKNQLELLRVMNSKKPRLDVTRATNKQM ::::::::::::::::::::::::::::::::::.:::::::::::::.::::::::::: gi|149 GRFQERLPKEKAPRGSGKKRKFQPLFGDFAAEKKSQLELLRVMNSKKPQLDVTRATNKQM 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA0 REEDQEEAAKRRKMSQKGKRKGGRQGPSGKRKGGPPGQGEKRKGGLGSKKHSWPSALAGK :::::::::::::::::::::::::::.::::::::.:: :::::::.: .: : .:.:: gi|149 REEDQEEAAKRRKMSQKGKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGK 300 310 320 330 340 350 370 mKIAA0 KKGVPPQGGKRRK .:: ::::::: gi|149 RKGRQHQGGKRRK 360 >>gi|122136026|sp|Q2KIH4.1|RRS1_BOVIN RecName: Full=Ribo (365 aa) initn: 2185 init1: 2185 opt: 2185 Z-score: 2192.7 bits: 414.4 E(): 2e-113 Smith-Waterman score: 2185; 88.493% identity (96.438% similar) in 365 aa overlap (9-373:1-365) 10 20 30 40 50 60 mKIAA0 GIRAAARAMEGQRVEELLAKAEQEEAEKLQRITVHKELELEFDLGNLLASDRNPPTVLRQ :::: :::::::::..:::::::::: ::::::::::::::::::::: ::. gi|122 MEGQSVEELLAKAERDEAEKLQRITVLKELELEFDLGNLLASDRNPPTGLRH 10 20 30 40 50 70 80 90 100 110 120 mKIAA0 AGPSPEAELRALARDNTQLLINQLWRLPTERVEEAVVARLPEPATRLPREKPLPRPRPLT :::. ::::::::::::::::::::.:::::::::.:::::::.::::::::.::::::: gi|122 AGPTQEAELRALARDNTQLLINQLWQLPTERVEEALVARLPEPSTRLPREKPVPRPRPLT 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA0 RWQQFARLKGIRPKKKTNLVWDEASGQWRRRWGYKRARDDTKEWLIEVPGSADPMEDQFA :::::::::::::::::::::::.::.:::::::.:::::::::::::::.::::::::: gi|122 RWQQFARLKGIRPKKKTNLVWDEVSGRWRRRWGYQRARDDTKEWLIEVPGNADPMEDQFA 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA0 KRTQAKKERVAKNELNRLRNLARAHKMQMPSSAGLHPTGHQSKEELGRAMQVAKVSTASV :: :::::::::::::::::::::::::.::.::.::::::::::::::::::::::::: gi|122 KRIQAKKERVAKNELNRLRNLARAHKMQLPSAAGMHPTGHQSKEELGRAMQVAKVSTASV 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA0 GRFQERLPKEKAPRGSGKKRKFQPLFGDFAAEKKNQLELLRVMNSKKPRLDVTRATNKQM ::::::::::::::::::::::::::::::::.:.:::.:::::::::..:.:::::::: gi|122 GRFQERLPKEKAPRGSGKKRKFQPLFGDFAAERKSQLEMLRVMNSKKPQMDITRATNKQM 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA0 REEDQEEAAKRRKMSQKGKRKGGRQGPSGKRKGGPPGQGEKRKGGLGSKKHSWPSALAGK :::::::::::::::::::::::::::..::::: :.:: :::::::.: .: : .:.:: gi|122 REEDQEEAAKRRKMSQKGKRKGGRQGPGSKRKGGTPSQGGKRKGGLGGKMNSGPPGLSGK 300 310 320 330 340 350 370 mKIAA0 KKGVPPQGGKRRK .:: ::::::: gi|122 RKGGQHQGGKRRK 360 373 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Thu Mar 12 22:24:56 2009 done: Thu Mar 12 22:31:10 2009 Total Scan time: 852.870 Total Display time: 0.090 Function used was FASTA [version 34.26.5 April 26, 2007]