# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/msh29358.fasta.nr -Q ../query/mKIAA1649.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1649, 453 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7920258 sequences Expectation_n fit: rho(ln(x))= 5.8180+/-0.000188; mu= 8.6105+/- 0.011 mean_var=88.4882+/-17.437, 0's: 41 Z-trim: 46 B-trim: 9 in 1/64 Lambda= 0.136343 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|74195617|dbj|BAE39617.1| unnamed protein produc ( 429) 2773 555.2 1.1e-155 gi|50401030|sp|Q8BG81.1|PDIP3_MOUSE RecName: Full= ( 420) 2728 546.4 5.1e-153 gi|148672533|gb|EDL04480.1| polymerase (DNA-direct ( 420) 2723 545.4 1e-152 gi|74209870|dbj|BAE30916.1| unnamed protein produc ( 420) 2717 544.2 2.3e-152 gi|149065765|gb|EDM15638.1| polymerase (DNA-direct ( 420) 2630 527.1 3.2e-147 gi|157279209|gb|AAI34442.1| Polymerase (DNA-direct ( 421) 2547 510.8 2.7e-142 gi|119593672|gb|EAW73266.1| polymerase (DNA-direct ( 482) 2533 508.0 2e-141 gi|73969375|ref|XP_531709.2| PREDICTED: similar to ( 515) 2532 507.9 2.4e-141 gi|109094475|ref|XP_001103556.1| PREDICTED: simila ( 541) 2529 507.3 3.8e-141 gi|50403796|sp|Q9BY77.2|PDIP3_HUMAN RecName: Full= ( 421) 2508 503.1 5.4e-140 gi|33876281|gb|AAH01488.2| POLDIP3 protein [Homo s ( 417) 2486 498.8 1.1e-138 gi|149743380|ref|XP_001500767.1| PREDICTED: simila ( 443) 2424 486.6 5.3e-135 gi|60098375|emb|CAH65018.1| hypothetical protein [ ( 418) 2036 410.2 4.8e-112 gi|224094682|ref|XP_002196467.1| PREDICTED: polyme ( 416) 1993 401.8 1.7e-109 gi|126339059|ref|XP_001370917.1| PREDICTED: hypoth ( 411) 1989 401.0 2.9e-109 gi|149457707|ref|XP_001508801.1| PREDICTED: hypoth ( 399) 1781 360.1 5.8e-97 gi|194382604|dbj|BAG64472.1| unnamed protein produ ( 438) 1721 348.3 2.2e-93 gi|74213780|dbj|BAE29328.1| unnamed protein produc ( 391) 1624 329.2 1.1e-87 gi|148672534|gb|EDL04481.1| polymerase (DNA-direct ( 391) 1619 328.2 2.2e-87 gi|52545639|emb|CAH56378.1| hypothetical protein [ ( 285) 1591 322.6 7.9e-86 gi|149065766|gb|EDM15639.1| polymerase (DNA-direct ( 391) 1557 316.0 1e-83 gi|119593670|gb|EAW73264.1| polymerase (DNA-direct ( 453) 1516 308.0 3.1e-81 gi|7228286|emb|CAB77059.1| hypothetical protein [H ( 392) 1505 305.8 1.3e-80 gi|49115681|gb|AAH73024.1| MGC82630 protein [Xenop ( 405) 1428 290.6 4.7e-76 gi|119593673|gb|EAW73267.1| polymerase (DNA-direct ( 279) 1259 257.3 3.5e-66 gi|26342917|dbj|BAC35115.1| unnamed protein produc ( 181) 1148 235.3 9.4e-60 gi|194387136|dbj|BAG59934.1| unnamed protein produ ( 186) 1127 231.2 1.7e-58 gi|89267426|emb|CAJ83463.1| polymerase (DNA-direct ( 433) 1125 231.1 4.3e-58 gi|62471556|gb|AAH93543.1| MGC114944 protein [Xeno ( 395) 1119 229.9 9.1e-58 gi|49250533|gb|AAH74542.1| Polymerase (DNA-directe ( 367) 1070 220.2 6.8e-55 gi|114432134|gb|ABI74675.1| POLDIP3 [Homo sapiens] ( 163) 1025 211.1 1.7e-52 gi|187468750|emb|CAQ51826.1| polymerase (DNA-direc ( 202) 953 197.0 3.6e-48 gi|119593671|gb|EAW73265.1| polymerase (DNA-direct ( 250) 892 185.1 1.7e-44 gi|194389360|dbj|BAG61641.1| unnamed protein produ ( 184) 882 183.0 5.4e-44 gi|40795881|gb|AAR91612.1| polymerase delta intera ( 185) 874 181.4 1.6e-43 gi|18043107|gb|AAH19643.1| POLDIP3 protein [Homo s ( 229) 867 180.1 4.9e-43 gi|224106591|ref|XP_002197072.1| PREDICTED: polyme ( 139) 823 171.3 1.3e-40 gi|47217029|emb|CAG01657.1| unnamed protein produc ( 466) 732 153.8 8.5e-35 gi|210086899|gb|EEA35298.1| hypothetical protein B ( 476) 382 84.9 4.6e-14 gi|198424161|ref|XP_002119758.1| PREDICTED: simila ( 428) 352 79.0 2.5e-12 gi|108875011|gb|EAT39236.1| hypothetical protein A ( 441) 319 72.5 2.3e-10 gi|72087247|ref|XP_787816.1| PREDICTED: hypothetic ( 413) 316 71.9 3.3e-10 gi|156219553|gb|EDO40433.1| predicted protein [Nem ( 346) 311 70.9 5.7e-10 gi|108875012|gb|EAT39237.1| hypothetical protein A ( 402) 289 66.6 1.3e-08 gi|157019727|gb|EAU77553.2| AGAP000924-PA [Anophel ( 390) 269 62.7 1.9e-07 gi|167874047|gb|EDS37430.1| conserved hypothetical ( 431) 268 62.5 2.4e-07 gi|189241005|ref|XP_969371.2| PREDICTED: similar t ( 404) 249 58.7 3e-06 gi|33146678|dbj|BAC80073.1| putative RNA and expor ( 323) 244 57.7 5e-06 gi|193591791|ref|XP_001951805.1| PREDICTED: simila ( 443) 244 57.8 6.4e-06 gi|221132363|ref|XP_002166508.1| PREDICTED: simila ( 273) 238 56.5 9.9e-06 >>gi|74195617|dbj|BAE39617.1| unnamed protein product [M (429 aa) initn: 2773 init1: 2773 opt: 2773 Z-score: 2951.2 bits: 555.2 E(): 1.1e-155 Smith-Waterman score: 2773; 99.766% identity (100.000% similar) in 428 aa overlap (26-453:2-429) 10 20 30 40 50 60 mKIAA1 GRPGCRKPLLTPAAGRARRSRLLLRSPLAARRKMADLSLDELIRKRGTAAKGRLSVRPGI :::::::::.::::::::::::::::::::::::: gi|741 VSPLAARRKMTDLSLDELIRKRGTAAKGRLSVRPGI 10 20 30 70 80 90 100 110 120 mKIAA1 GGVRSRVGIQHSLVNQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 GGVRSRVGIQHSLVNQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRI 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 KGKVQDAREMLNSRKQQGTVPQKPRQVADAREKISLKRRSPAAFTSPPIGTVTPALKLTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 KGKVQDAREMLNSRKQQGTVPQKPRQVADAREKISLKRRSPAAFTSPPIGTVTPALKLTK 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 TIQVPQQKAMVPLHAHPAGMRINVVNNHQAKQNLYDLDEDDDIVVPVPPKQMKFAATGSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 TIQVPQQKAMVPLHAHPAGMRINVVNNHQAKQNLYDLDEDDDIVVPVPPKQMKFAATGSL 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA1 VHHMTGLSSSKLSMSKALPLTKVVQNDAYTAPVLPSSVRTKALTSMSRTLVNKEEPPKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 VHHMTGLSSSKLSMSKALPLTKVVQNDAYTAPVLPSSVRTKALTSMSRTLVNKEEPPKEL 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA1 PPAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 PPAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDA 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA1 ITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRGNPASSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 ITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRGNPASSN 340 350 360 370 380 390 430 440 450 mKIAA1 PPAEVDPDTVLRALFKSSGASVTTQPTEFKIKL ::::::::::::::::::::::::::::::::: gi|741 PPAEVDPDTVLRALFKSSGASVTTQPTEFKIKL 400 410 420 >>gi|50401030|sp|Q8BG81.1|PDIP3_MOUSE RecName: Full=Poly (420 aa) initn: 2728 init1: 2728 opt: 2728 Z-score: 2903.5 bits: 546.4 E(): 5.1e-153 Smith-Waterman score: 2728; 100.000% identity (100.000% similar) in 420 aa overlap (34-453:1-420) 10 20 30 40 50 60 mKIAA1 GCRKPLLTPAAGRARRSRLLLRSPLAARRKMADLSLDELIRKRGTAAKGRLSVRPGIGGV :::::::::::::::::::::::::::::: gi|504 MADLSLDELIRKRGTAAKGRLSVRPGIGGV 10 20 30 70 80 90 100 110 120 mKIAA1 RSRVGIQHSLVNQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|504 RSRVGIQHSLVNQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGK 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 VQDAREMLNSRKQQGTVPQKPRQVADAREKISLKRRSPAAFTSPPIGTVTPALKLTKTIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|504 VQDAREMLNSRKQQGTVPQKPRQVADAREKISLKRRSPAAFTSPPIGTVTPALKLTKTIQ 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 VPQQKAMVPLHAHPAGMRINVVNNHQAKQNLYDLDEDDDIVVPVPPKQMKFAATGSLVHH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|504 VPQQKAMVPLHAHPAGMRINVVNNHQAKQNLYDLDEDDDIVVPVPPKQMKFAATGSLVHH 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA1 MTGLSSSKLSMSKALPLTKVVQNDAYTAPVLPSSVRTKALTSMSRTLVNKEEPPKELPPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|504 MTGLSSSKLSMSKALPLTKVVQNDAYTAPVLPSSVRTKALTSMSRTLVNKEEPPKELPPA 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA1 EPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|504 EPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITA 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA1 YKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRGNPASSNPPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|504 YKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRGNPASSNPPA 340 350 360 370 380 390 430 440 450 mKIAA1 EVDPDTVLRALFKSSGASVTTQPTEFKIKL :::::::::::::::::::::::::::::: gi|504 EVDPDTVLRALFKSSGASVTTQPTEFKIKL 400 410 420 >>gi|148672533|gb|EDL04480.1| polymerase (DNA-directed), (420 aa) initn: 2723 init1: 2723 opt: 2723 Z-score: 2898.2 bits: 545.4 E(): 1e-152 Smith-Waterman score: 2723; 99.762% identity (100.000% similar) in 420 aa overlap (34-453:1-420) 10 20 30 40 50 60 mKIAA1 GCRKPLLTPAAGRARRSRLLLRSPLAARRKMADLSLDELIRKRGTAAKGRLSVRPGIGGV :::::::::::::::::::::::::::::: gi|148 MADLSLDELIRKRGTAAKGRLSVRPGIGGV 10 20 30 70 80 90 100 110 120 mKIAA1 RSRVGIQHSLVNQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 RSRVGIQHSLVNQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGK 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 VQDAREMLNSRKQQGTVPQKPRQVADAREKISLKRRSPAAFTSPPIGTVTPALKLTKTIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VQDAREMLNSRKQQGTVPQKPRQVADAREKISLKRRSPAAFTSPPIGTVTPALKLTKTIQ 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 VPQQKAMVPLHAHPAGMRINVVNNHQAKQNLYDLDEDDDIVVPVPPKQMKFAATGSLVHH :::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::: gi|148 VPQQKAMVPLHAHPAGMRINVVNNHQAKQNLYDLDEDDDIVAPVPPKQMKFAATGSLVHH 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA1 MTGLSSSKLSMSKALPLTKVVQNDAYTAPVLPSSVRTKALTSMSRTLVNKEEPPKELPPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 MTGLSSSKLSMSKALPLTKVVQNDAYTAPVLPSSVRTKALTSMSRTLVNKEEPPKELPPA 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA1 EPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITA 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA1 YKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRGNPASSNPPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 YKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRGNPASSNPPA 340 350 360 370 380 390 430 440 450 mKIAA1 EVDPDTVLRALFKSSGASVTTQPTEFKIKL :::::::::::::::::::::::::::::: gi|148 EVDPDTVLRALFKSSGASVTTQPTEFKIKL 400 410 420 >>gi|74209870|dbj|BAE30916.1| unnamed protein product [M (420 aa) initn: 2717 init1: 2717 opt: 2717 Z-score: 2891.8 bits: 544.2 E(): 2.3e-152 Smith-Waterman score: 2717; 99.762% identity (99.762% similar) in 420 aa overlap (34-453:1-420) 10 20 30 40 50 60 mKIAA1 GCRKPLLTPAAGRARRSRLLLRSPLAARRKMADLSLDELIRKRGTAAKGRLSVRPGIGGV :::::::::::::::::::::::::::::: gi|742 MADLSLDELIRKRGTAAKGRLSVRPGIGGV 10 20 30 70 80 90 100 110 120 mKIAA1 RSRVGIQHSLVNQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 RSRVGIQHSLVNQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGK 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 VQDAREMLNSRKQQGTVPQKPRQVADAREKISLKRRSPAAFTSPPIGTVTPALKLTKTIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 VQDAREMLNSRKQQGTVPQKPRQVADAREKISLKRRSPAAFTSPPIGTVTPALKLTKTIQ 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 VPQQKAMVPLHAHPAGMRINVVNNHQAKQNLYDLDEDDDIVVPVPPKQMKFAATGSLVHH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 VPQQKAMVPLHAHPAGMRINVVNNHQAKQNLYDLDEDDDIVVPVPPKQMKFAATGSLVHH 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA1 MTGLSSSKLSMSKALPLTKVVQNDAYTAPVLPSSVRTKALTSMSRTLVNKEEPPKELPPA :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 MTRLSSSKLSMSKALPLTKVVQNDAYTAPVLPSSVRTKALTSMSRTLVNKEEPPKELPPA 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA1 EPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 EPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITA 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA1 YKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRGNPASSNPPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 YKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRGNPASSNPPA 340 350 360 370 380 390 430 440 450 mKIAA1 EVDPDTVLRALFKSSGASVTTQPTEFKIKL :::::::::::::::::::::::::::::: gi|742 EVDPDTVLRALFKSSGASVTTQPTEFKIKL 400 410 420 >>gi|149065765|gb|EDM15638.1| polymerase (DNA-directed), (420 aa) initn: 2630 init1: 2630 opt: 2630 Z-score: 2799.3 bits: 527.1 E(): 3.2e-147 Smith-Waterman score: 2630; 95.952% identity (98.810% similar) in 420 aa overlap (34-453:1-420) 10 20 30 40 50 60 mKIAA1 GCRKPLLTPAAGRARRSRLLLRSPLAARRKMADLSLDELIRKRGTAAKGRLSVRPGIGGV :::.::::::::::::.::::::::::::: gi|149 MADISLDELIRKRGTATKGRLSVRPGIGGV 10 20 30 70 80 90 100 110 120 mKIAA1 RSRVGIQHSLVNQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGK ::::::::::..:::::::::::::::::::::::::::::::::::::::::::::::: gi|149 RSRVGIQHSLLSQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGK 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 VQDAREMLNSRKQQGTVPQKPRQVADAREKISLKRRSPAAFTSPPIGTVTPALKLTKTIQ ::::::::::::::.::::::::::::::::::::::::.:::::::::::::::::::: gi|149 VQDAREMLNSRKQQNTVPQKPRQVADAREKISLKRRSPATFTSPPIGTVTPALKLTKTIQ 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 VPQQKAMVPLHAHPAGMRINVVNNHQAKQNLYDLDEDDDIVVPVPPKQMKFAATGSLVHH :::::::::::::::::::::::::::::::::::::::::.::: ::::::: :::::: gi|149 VPQQKAMVPLHAHPAGMRINVVNNHQAKQNLYDLDEDDDIVAPVPTKQMKFAAPGSLVHH 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA1 MTGLSSSKLSMSKALPLTKVVQNDAYTAPVLPSSVRTKALTSMSRTLVNKEEPPKELPPA ::.:: ::::::.:::::::::::::::::::::::::::.:::::::::: ::::::: gi|149 TTGMSSPKLSMSKTLPLTKVVQNDAYTAPVLPSSVRTKALTNMSRTLVNKEELPKELPPA 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA1 EPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 EPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITA 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA1 YKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRGNPASSNPPA :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|149 YKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRGNPVSSNPPA 340 350 360 370 380 390 430 440 450 mKIAA1 EVDPDTVLRALFKSSGASVTTQPTEFKIKL ::::::.::::::::::::::::::::::: gi|149 EVDPDTILRALFKSSGASVTTQPTEFKIKL 400 410 420 >>gi|157279209|gb|AAI34442.1| Polymerase (DNA-directed), (421 aa) initn: 2457 init1: 2351 opt: 2547 Z-score: 2711.1 bits: 510.8 E(): 2.7e-142 Smith-Waterman score: 2547; 91.924% identity (98.337% similar) in 421 aa overlap (34-453:1-421) 10 20 30 40 50 60 mKIAA1 GCRKPLLTPAAGRARRSRLLLRSPLAARRKMADLSLDELIRKRGTAAKGRLSVRPGIGGV :::.::::::::::.:.::::..:::.::: gi|157 MADISLDELIRKRGAASKGRLNARPGVGGV 10 20 30 70 80 90 100 110 120 mKIAA1 RSRVGIQHSLVNQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGK :::::::.::..:::::::::::::::::::::::::::::::::::::::::::::::: gi|157 RSRVGIQQSLLSQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGK 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 VQDAREMLNSRKQQGTVPQKPRQVADAREKISLKRRSPAAFTSPPIGTVTPALKLTKTIQ ::::::::::::::.::::::.::::::::::::: ::::: :::::::::::::::::: gi|157 VQDAREMLNSRKQQSTVPQKPHQVADAREKISLKRNSPAAFMSPPIGTVTPALKLTKTIQ 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 VPQQKAMVPLHAHPAGMRINVVNNHQAKQNLYDLDEDDDIVVPVPPKQMKFAATGSLVHH :::::::.:.:::::::::::::::::::::::::.:::...:.: :::::::.::..:: gi|157 VPQQKAMAPIHAHPAGMRINVVNNHQAKQNLYDLDDDDDVIAPIPTKQMKFAASGSFLHH 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA1 MTGLSSSKLSMSKALPLTKVVQNDAYTAPVLPSSVRTKALTSMSRTLVNKEEPPKELPPA :.:.:::::::::::::::::::::::::.: :::::::::.:::::::::::::::::: gi|157 MAGVSSSKLSMSKALPLTKVVQNDAYTAPALSSSVRTKALTNMSRTLVNKEEPPKELPPA 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA1 EPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 EPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITA 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA1 YKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRGNPA-SSNPP :::::::::::::::::::::::::::::::::::::::::::::::::: : : ::::: gi|157 YKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRVNSAPSSNPP 340 350 360 370 380 390 430 440 450 mKIAA1 AEVDPDTVLRALFKSSGASVTTQPTEFKIKL :::::::.:.::::::::::::::::::::: gi|157 AEVDPDTILKALFKSSGASVTTQPTEFKIKL 400 410 420 >>gi|119593672|gb|EAW73266.1| polymerase (DNA-directed), (482 aa) initn: 2444 init1: 2338 opt: 2533 Z-score: 2695.4 bits: 508.0 E(): 2e-141 Smith-Waterman score: 2533; 87.973% identity (94.209% similar) in 449 aa overlap (6-453:38-482) 10 20 30 mKIAA1 GRPGCRKPLLTPAAGRARRSRLLLRSPLAARRKMA :. : . .:: :: : :: : ::: gi|119 GSRGTSPPLPVLACFELAVARVGPRTPEVVRRSLAAEGAG----SRGLDCFRLARRSKMA 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA1 DLSLDELIRKRGTAAKGRLSVRPGIGGVRSRVGIQHSLVNQPARTATFQQRFDARQKIGL :.::::::::::.::::::..:::.::::::::::..:..: .::::::::::::::::: gi|119 DISLDELIRKRGAAAKGRLNARPGVGGVRSRVGIQQGLLSQSTRTATFQQRFDARQKIGL 70 80 90 100 110 120 100 110 120 130 140 150 mKIAA1 SDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQGTVPQKPRQVADAREKIS :::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::: gi|119 SDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVADAREKIS 130 140 150 160 170 180 160 170 180 190 200 210 mKIAA1 LKRRSPAAFTSPPIGTVTPALKLTKTIQVPQQKAMVPLHAHPAGMRINVVNNHQAKQNLY ::: ::::: .::::::::::::::::::::::::.::: :::::::::::::::::::: gi|119 LKRSSPAAFINPPIGTVTPALKLTKTIQVPQQKAMAPLHPHPAGMRINVVNNHQAKQNLY 190 200 210 220 230 240 220 230 240 250 260 270 mKIAA1 DLDEDDDIVVPVPPKQMKFAATGSLVHHMTGLSSSKLSMSKALPLTKVVQNDAYTAPVLP ::::::: .. :: :::::::.:...:::.:::::::::::::::::::::::::::.:: gi|119 DLDEDDDGIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPALP 250 260 270 280 290 300 280 290 300 310 320 330 mKIAA1 SSVRTKALTSMSRTLVNKEEPPKELPPAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCV ::.::::::.:::::::::::::::: ::::::::::::::::::::::::::::::::: gi|119 SSIRTKALTNMSRTLVNKEEPPKELPAAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCV 310 320 330 340 350 360 340 350 360 370 380 390 mKIAA1 CGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 CGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPIL 370 380 390 400 410 420 400 410 420 430 440 450 mKIAA1 LRLSDSPSVKKESELPRRGNPASS-NPPAEVDPDTVLRALFKSSGASVTTQPTEFKIKL ::::::::.::::::::: : ::: ::::::::::.:.::::::::::::::::::::: gi|119 LRLSDSPSMKKESELPRRVNSASSSNPPAEVDPDTILKALFKSSGASVTTQPTEFKIKL 430 440 450 460 470 480 >>gi|73969375|ref|XP_531709.2| PREDICTED: similar to DNA (515 aa) initn: 2397 init1: 2327 opt: 2532 Z-score: 2693.9 bits: 507.9 E(): 2.4e-141 Smith-Waterman score: 2540; 84.421% identity (91.789% similar) in 475 aa overlap (1-453:41-515) 10 20 mKIAA1 GRPGCRKPL--LTPAAGRARR----SRLLL : ::.. :.:...:.:: : :: gi|739 LRGESQAAGKRGWWDGTQAVLQLRPVSSHPGSGGCHRAAAGLNPSVARVRRPDAGSGSLL 20 30 40 50 60 70 30 40 50 60 mKIAA1 RSP---------------LAARRKMADLSLDELIRKRGTAAKGRLSVRPGIGGVRSRVGI :: .: ::::::.::::::::::.:.::::..:::.::::::::: gi|739 RSGRRGGLQGWGSLSCSRFARRRKMADISLDELIRKRGAATKGRLNARPGVGGVRSRVGI 80 90 100 110 120 130 70 80 90 100 110 120 mKIAA1 QHSLVNQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGKVQDARE :..:..:::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|739 QQGLLGQPARTATFQQRFDARQKIGLSDARLKLGVQDAREKLLQKDARFRIKGKVQDARE 140 150 160 170 180 190 130 140 150 160 170 180 mKIAA1 MLNSRKQQGTVPQKPRQVADAREKISLKRRSPAAFTSPPIGTVTPALKLTKTIQVPQQKA :::::::: :::::::::::::::::::: :::.: :::::::::::::::::::::::: gi|739 MLNSRKQQVTVPQKPRQVADAREKISLKRSSPATFLSPPIGTVTPALKLTKTIQVPQQKA 200 210 220 230 240 250 190 200 210 220 230 240 mKIAA1 MVPLHAHPAGMRINVVNNHQAKQNLYDLDEDDDIVVPVPPKQMKFAATGSLVHHMTGLSS :.:::.::::::::::::: ::::::::.:::: :.:.: :::::::..:..::..:::: gi|739 MAPLHTHPAGMRINVVNNHPAKQNLYDLEEDDDSVAPIPSKQMKFAASSSFLHHVAGLSS 260 270 280 290 300 310 250 260 270 280 290 300 mKIAA1 SKLSMSKALPLTKVVQNDAYTAPVLPSSVRTKALTSMSRTLVNKEEPPKELPPAEPVLSP ::.::::::::::::::::::::.:::::::::::::::::::::: ::::::::::::: gi|739 SKFSMSKALPLTKVVQNDAYTAPALPSSVRTKALTSMSRTLVNKEESPKELPPAEPVLSP 320 330 340 350 360 370 310 320 330 340 350 360 mKIAA1 LEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 LEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNN 380 390 400 410 420 430 370 380 390 400 410 420 mKIAA1 RCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRGNP-ASSNPPAEVDPD :::::::::::::::::::::::::::::::::::::::::::: : :::::::::::: gi|739 RCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRVNSTASSNPPAEVDPD 440 450 460 470 480 490 430 440 450 mKIAA1 TVLRALFKSSGASVTTQPTEFKIKL :.:.::::::::::::::::::::: gi|739 TILKALFKSSGASVTTQPTEFKIKL 500 510 >>gi|109094475|ref|XP_001103556.1| PREDICTED: similar to (541 aa) initn: 2445 init1: 2339 opt: 2529 Z-score: 2690.4 bits: 507.3 E(): 3.8e-141 Smith-Waterman score: 2529; 90.867% identity (96.956% similar) in 427 aa overlap (28-453:115-541) 10 20 30 40 50 mKIAA1 GRPGCRKPLLTPAAGRARRSRLLLRSPLAARRKMADLSLDELIRKRGTAAKGRLSVR :: : ::::.::::::::::..:::::..: gi|109 SWSADVGSSSSLCSGRRGGLAGWGCLGSFRLARRSKMADISLDELIRKRGAVAKGRLNAR 90 100 110 120 130 140 60 70 80 90 100 110 mKIAA1 PGIGGVRSRVGIQHSLVNQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDAR ::.::::::::::..:..: .::::::::::::::::::::::::::::::::::::::: gi|109 PGVGGVRSRVGIQQGLLSQSTRTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDAR 150 160 170 180 190 200 120 130 140 150 160 170 mKIAA1 FRIKGKVQDAREMLNSRKQQGTVPQKPRQVADAREKISLKRRSPAAFTSPPIGTVTPALK :::::::::::::::::::: :.:::::::.:::::::::: ::::: .::::::::::: gi|109 FRIKGKVQDAREMLNSRKQQTTAPQKPRQVTDAREKISLKRSSPAAFINPPIGTVTPALK 210 220 230 240 250 260 180 190 200 210 220 230 mKIAA1 LTKTIQVPQQKAMVPLHAHPAGMRINVVNNHQAKQNLYDLDEDDDIVVPVPPKQMKFAAT :::::::::::::.::: ::::::::::::::::::::::::::: .. :: :::::::. gi|109 LTKTIQVPQQKAMAPLHPHPAGMRINVVNNHQAKQNLYDLDEDDDGIASVPTKQMKFAAS 270 280 290 300 310 320 240 250 260 270 280 290 mKIAA1 GSLVHHMTGLSSSKLSMSKALPLTKVVQNDAYTAPVLPSSVRTKALTSMSRTLVNKEEPP :...:::.:::::::::::::::::::::::::::.:::::::::::.:::::::::::: gi|109 GGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSVRTKALTNMSRTLVNKEEPP 330 340 350 360 370 380 300 310 320 330 340 350 mKIAA1 KELPPAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KELPPAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKK 390 400 410 420 430 440 360 370 380 390 400 410 mKIAA1 DDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRGNPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::: : : gi|109 DDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRVNSA 450 460 470 480 490 500 420 430 440 450 mKIAA1 SS-NPPAEVDPDTVLRALFKSSGASVTTQPTEFKIKL :: ::::::::::.:.::::::::::::::::::::: gi|109 SSSNPPAEVDPDTILKALFKSSGASVTTQPTEFKIKL 510 520 530 540 >>gi|50403796|sp|Q9BY77.2|PDIP3_HUMAN RecName: Full=Poly (421 aa) initn: 2424 init1: 2318 opt: 2508 Z-score: 2669.6 bits: 503.1 E(): 5.4e-140 Smith-Waterman score: 2508; 91.211% identity (97.150% similar) in 421 aa overlap (34-453:1-421) 10 20 30 40 50 60 mKIAA1 GCRKPLLTPAAGRARRSRLLLRSPLAARRKMADLSLDELIRKRGTAAKGRLSVRPGIGGV :::.::::::::::.::::::..:::.::: gi|504 MADISLDELIRKRGAAAKGRLNARPGVGGV 10 20 30 70 80 90 100 110 120 mKIAA1 RSRVGIQHSLVNQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGK :::::::..:..: .::::::::::::::::::::::::::::::::::::::::::::: gi|504 RSRVGIQQGLLSQSTRTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGK 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 VQDAREMLNSRKQQGTVPQKPRQVADAREKISLKRRSPAAFTSPPIGTVTPALKLTKTIQ :::::::::::::: :::::::::::::::::::: ::::: .::::::::::::::::: gi|504 VQDAREMLNSRKQQTTVPQKPRQVADAREKISLKRSSPAAFINPPIGTVTPALKLTKTIQ 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 VPQQKAMVPLHAHPAGMRINVVNNHQAKQNLYDLDEDDDIVVPVPPKQMKFAATGSLVHH :::::::.::: ::::::::::::::::::::::::::: .. :: :::::::.:...:: gi|504 VPQQKAMAPLHPHPAGMRINVVNNHQAKQNLYDLDEDDDGIASVPTKQMKFAASGGFLHH 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA1 MTGLSSSKLSMSKALPLTKVVQNDAYTAPVLPSSVRTKALTSMSRTLVNKEEPPKELPPA :.:::::::::::::::::::::::::::.::::.::::::.:::::::::::::::: : gi|504 MAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKALTNMSRTLVNKEEPPKELPAA 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA1 EPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|504 EPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITA 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA1 YKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRGNPASS-NPP ::::::::::::::::::::::::::::::::::::::::.::::::::: : ::: ::: gi|504 YKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSMKKESELPRRVNSASSSNPP 340 350 360 370 380 390 430 440 450 mKIAA1 AEVDPDTVLRALFKSSGASVTTQPTEFKIKL :::::::.:.::::::::::::::::::::: gi|504 AEVDPDTILKALFKSSGASVTTQPTEFKIKL 400 410 420 453 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Sun Mar 15 07:27:17 2009 done: Sun Mar 15 07:34:03 2009 Total Scan time: 913.770 Total Display time: 0.110 Function used was FASTA [version 34.26.5 April 26, 2007]