FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0129.ptfa, 453 aa vs ./tmplib.26680 library 1768564 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.8944+/-0.00476; mu= 15.7270+/- 0.319 mean_var=102.0680+/-23.251, 0's: 0 Z-trim: 3 B-trim: 4 in 1/35 Lambda= 0.1269 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mFLJ00123 ( 490 res) msj07117 ( 490) 215 50 5.9e-07 mKIAA4179 ( 500 res) mid07007 ( 500) 199 47 4.5e-06 mKIAA1113 ( 1071 res) mpm06042 (1071) 145 37 0.0069 >>mFLJ00123 ( 490 res) msj07117 (490 aa) initn: 431 init1: 179 opt: 215 Z-score: 217.2 bits: 49.5 E(): 5.9e-07 Smith-Waterman score: 424; 29.474% identity (35.990% ungapped) in 475 aa overlap (6-442:53-479) 10 20 30 mKIAA0 PTTLHREQRLPLRMASETTEARAPFQPDGAYGWR- : : :..:. . : ..: . : : mFLJ00 EELDPITQLPPPPAPRRCFTCPQCRKSFPRRSFRPNLQLANMVQVIRQ-MHPTPGRGSRV 30 40 50 60 70 80 40 50 60 70 80 mKIAA0 -----CPEHSERPAELFCRRCGRCVCALCPVLGAHRGHPVGLAEEEAVRVQKLIQDCLEC ::.:.: .:::. . .:..: .:. : : :: . . . .: .: mFLJ00 NEQGICPRHQE-ALKLFCEVDEEAICVVCRESRSHKQHSVVPLEEVVQEYKAKLQGHVEP 90 100 110 120 130 140 90 100 110 120 130 140 mKIAA0 LATKKRQHADNIAHLEDAGER----LKVYADSSKAWLTQKFTEL-RLLLDEEEVLAKKFI : :.: . . ... :: :: : : ....: .: :.: .:. : ... mFLJ00 L----RKHLEAVQKMKAKEERRVTELKSQMKSELAAVASEFGRLTRFLAEEQAGLERRL- 150 160 170 180 190 150 160 170 180 190 200 mKIAA0 DKSTQLTLQVYREQAETCGKQIEVMDDFSTRVWGIGQEPNPVQLLQAYIATKTEMGQQMS ::. :. :. ..:. : . .:: . .: : .:: . mFLJ00 -----------REMHEA---QLGRAGAAANRL-----EEQAAQLSR-LLAEAQERSQQGG 200 210 220 230 210 220 230 240 250 260 mKIAA0 PSELSHPVPLSFEPVKNFFKEFVEAIGNTLQTPMDTRLKENINCQLSNSSSTKPGALLKT : . .:. :.. : :: : .. :: . . . . : mFLJ00 LRLL--------QDIKETFNRCEEI---QLQPP---EIWSPDPCQPHSHDFLTDAIVRKM 240 250 260 270 280 270 280 290 300 310 320 mKIAA0 SPSPERALFLKYARTP-TLDPDTMHARLRLSPDGLTVRCSLLGRLGPRPAPRFDALRQVL : .: . ::. :::::: : : :::: :: . . :. . ::.: :: mFLJ00 S-----RMFCQAARVDLTLDPDTAHPALLLSPDRRGVRLAERRQEVPEHSKRFSADCCVL 290 300 310 320 330 330 340 350 mKIAA0 GRDGFAAGRHYWEVDVQEAGVGWWVGAAYPSL-------------------------RRR : .:: .:::::::.: . :: :::: : ::: mFLJ00 GAQGFRSGRHYWEVEVG-GRRGWAVGAARESTHHKEKVGSGGSSVSSGDASSSRHHHRRR 340 350 360 370 380 390 360 370 380 390 400 410 mKIAA0 GASAAARLGCNRESWCVKRYDLEYWAFHDGQRSRLRPRRDPHRLGVFLDYEAGILAFYDV .: .:: ::: . .: : . ... : : . :.:.::.:::::: :.::. mFLJ00 RLHLPQQLLLQREVWCVGTHGKRYQAQSSTEQTLLSPCEKPRRFGVYLDYEAGRLGFYN- 400 410 420 430 440 450 420 430 440 450 mKIAA0 AGGMSHLHTFHAAFQ-EPLYPALRLWEGPISIPRLP : ..:.::: ::: : ..: .:. mFLJ00 ADTLAHVHTFSAAFLGERVFPFFRVLSKGTRIKLCP 460 470 480 490 >>mKIAA4179 ( 500 res) mid07007 (500 aa) initn: 359 init1: 166 opt: 199 Z-score: 201.3 bits: 46.6 E(): 4.5e-06 Smith-Waterman score: 422; 28.501% identity (32.768% ungapped) in 407 aa overlap (35-438:119-475) 10 20 30 40 50 60 mKIAA0 HREQRLPLRMASETTEARAPFQPDGAYGWRCPEHSERPAELFCRRCGRCVCALCPVLGAH : .: : : ::: . . :: .: . .: mKIAA4 SLRPNRQLGSMVEIAKQLQTVKRKIRDESLCSQHHE-PLSLFCYEDQEAVCLICAISHTH 90 100 110 120 130 140 70 80 90 100 110 120 mKIAA0 RGHPVGLAEEEAVRVQKLIQDCLECLATKKRQHADNIAHLEDAGERLKVYADSSKAWLTQ : : : .. . . .. .: ::: : : .. . : : .:: ..: . . . mKIAA4 RPHTVVPMDDATQEYKEKLQKCLEPLEQKLQEITCCKASEEKKPGELKRLVESRRQQILK 150 160 170 180 190 200 130 140 150 160 170 180 mKIAA0 KFTELRLLLDEEEVLAKKFIDKSTQLTLQVYREQAETCGKQIEVMDDFSTRVWGIGQEPN .: ::. ::::. . ... : :: ::.: : . . . ....: : mKIAA4 EFEELHRRLDEEQQTLLSRLEEEEQDILQRLRENAAHLGDRRRDLAHLAAEVEG------ 210 220 230 240 250 260 190 200 210 220 230 240 mKIAA0 PVQLLQAYIATKTEMGQQMSPSELSHPVPLSFEPVKNFFKEFVEAIGNTLQTPMDTRLKE . ::. : .: .. ::. ... : . . : .. .:.. mKIAA4 --KCLQS--------GFEM------------LKDVKSTLEK-CEKVKTMEVTSVSIELEK 270 280 290 250 260 270 280 290 300 mKIAA0 NINCQLSNSSSTKPGALLKTSPSPERALFLKYARTPTLDPDTMHARLRLSPDGLTVRCSL :. :. : . : .. . ::::.: : : :: : .:. . mKIAA4 NF--------SNFPRQYFAL-----RKILKQLIADVTLDPETAHPNLVLSEDRKSVKF-V 300 310 320 330 340 310 320 330 340 350 360 mKIAA0 LGRLGPRP-AP-RFDALRQVLGRDGFAAGRHYWEVDVQEAGVGWWVGAAYPSLRRRGA-S :: : .: :: ::. .::..:::::::.: . . : ::. :. :.: . mKIAA4 ETRLRDLPDTPQRFTFYPCVLATEGFTSGRHYWEVEVGDK-THWAVGVCRDSVSRKGELT 350 360 370 380 390 400 370 380 390 400 410 420 mKIAA0 AAARLGCNRESWCVKRYDLEYWAFHDGQRSRLRPRRDPHRLGVFLDYEAGILAFYDVAGG . : : :. .. . .: . :. . :.:.:.::::::: :.::.:. mKIAA4 PLPETG----YWRVRLWNGDKYAATTTPFTPLHIKVKPKRVGIFLDYEAGTLSFYNVTD- 410 420 430 440 450 430 440 450 mKIAA0 MSHLHTFHAAFQEPLYPALRLWEGPISIPRLP ::..:: .: : :.: mKIAA4 RSHIYTFTDTFTEKLWPLFYPGIRAGRKNAAPLTIRPPTDWE 460 470 480 490 500 >>mKIAA1113 ( 1071 res) mpm06042 (1071 aa) initn: 132 init1: 85 opt: 145 Z-score: 144.2 bits: 37.1 E(): 0.0069 Smith-Waterman score: 145; 22.353% identity (25.792% ungapped) in 255 aa overlap (29-261:229-471) 10 20 30 40 50 mKIAA0 PTTLHREQRLPLRMASETTEARAPFQPDGAYGWR---CPEHSERPAELFCRRCGRCVC :. : : :: :... .:::. : : .: mKIAA1 LCKTCIEAHQRVKFTKDHLIRKKEDVSESVGTSGQRPVFCPVHKQEQLKLFCETCDRLTC 200 210 220 230 240 250 60 70 80 90 100 110 mKIAA0 ALCPVLGAHRGHPVGLAEEEAVRVQK-LIQDCLECLATKKRQHADNIAHL--EDAGERLK : .: :. : . :: : . :: :.. : : :: : .:. .. .:.: mKIAA1 RDCQLL-EHKEHRYQFLEE-AFQNQKGAIENLLAKLLEKK-----NYVHFAATQVQNRIK 260 270 280 290 300 310 120 130 140 150 160 mKIAA0 VYADSSKAWLTQKFTELRLLLDEEEVLAKKFIDKSTQLT----LQVYREQAETCG--KQI ...: . . . :..: . .:..... ..: ... ..: . : .:. mKIAA1 EVNETNKRVEQEIKVAIFTLINEINKKGKSLLQQLENVTKERQMKLLQQQNDITGLSRQV 320 330 340 350 360 370 170 180 190 200 210 220 mKIAA0 EVMDDFSTRVWGIGQEPNPVQLLQAYIATKTEMGQQMSPSELSHPVP-----LSFEPVKN . . .:.. :.:.. . . : . . : .. . .. ::: . :. . mKIAA1 KHVMNFTN--WAIASGSSTALLYSKRLIT-FQLRHILKAR--CDPVPAANGAIRFHCDPT 380 390 400 410 420 230 240 250 260 270 mKIAA0 FFKEFVEAIGNTL--QTPMDTRLKENINCQL---SNSSSTKPGALLKTSPSPERALFLKY :. . : .:: . . : . . :. .: : :: . mKIAA1 FWAKNVVNLGNLVIESKPAPGYTPNVVVGQVPPGTNHISKTPGQINLAQLRLQHMQQQVY 430 440 450 460 470 480 280 290 300 310 320 330 mKIAA0 ARTPTLDPDTMHARLRLSPDGLTVRCSLLGRLGPRPAPRFDALRQVLGRDGFAAGRHYWE mKIAA1 AQKHQQLQQMRLQQPPAPIPTTTATTQQHPRQAAPQMLQQQPPRLISVQTMQRGNMNCGA 490 500 510 520 530 540 453 residues in 1 query sequences 1768564 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:12:42 2006 done: Mon Mar 27 10:12:43 2006 Scan time: 0.660 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]